Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008906

Physical Location & Seq

Genomic Coordinates Forward (+)

55018183 .. 55021171

Gene Structure 2989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG292000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCTATTCTTGACAGCTTTTTTCGGTGTTTTGGCGGGTTGAAGCCAACAGAAAAGGCTACTACTCTTCAGCCTCTGGACTTACATGATGACTTTAATGCAGGCCTGGTTTTGAGATCAACATCAGATGAACGACCGATTCACCACACCGTCAAAATACGATCCTTTTCTTTGCTAAGAAATTTAATGGATAGATGCGAAGTAGGGGACTTTGAAGCTGGAGGATACAGATGGAAACTAGTGCTCTGCCCGAATGGAAACAAGAAGAGGAATGTGGAAGGCCACATCTCTCTCTACTTGGAAATGGCTGAAGAAAAACCAATTGAGCCTGACCAGATCGTAGCAATTGATTTTAGATTGTTTTTGCTTAATCAGAAGAAGAGCAACTACTTGGTTCTTGAGGATGCCAATAAAAAGGAGAAGAAGTATGTCTTTTATAGGACGATTGTCGGTGGTTCGGCTGGTTTCGATCAGTTTCTTCCTCTTGAAGAATTTACTGACGCCTCCAACGGTTATCTAATTGATGACACTTGTGAATTTGGCGCGGAGGTCTTTGTTTCTAAACAAGTAAGAACAGGAAAAGGAGAGTGTCTAGTGTCTATGATCAAAGATGTCACCAAGTACAAGCGTGCTTGGAGCATTTCCAACTTTTCACAGTTGGCTGATGAACGCTATACCTCAAATCCGTTCTTTTTGACAGACCACAAATATTGCGAATGGAATCTACGACTTTATCCCAATGGAAATAAGTTGGGAAATGGTAGTGGTCATATTTCTGTTTATGTGGAATTGGCCAAGTTAAAATCTCTTCCTCCAGGCTCTAAAATATTGGCAGAGTTTACCATACAAATCCTAGATCAAATCAATGGGAAGCATCATTCTACCAAAGCGTGTAAACGCTGGTTCGGTGCCAGTCCCTCGACCTCGGCTTGGGGTTGCGCTCAATTCATCAGACAGGACTTGTTCAGTAACTCGGAGAAAGGATTGTTAGTGTGTGATTGTTGCATCGTGGAAACAGACATTACAATCTGTGCAGTAGAACTCACAATTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

351

Amino Acids

39.65

Weight (kDa)

6.71

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	48 - 184	5.6e-27	MATH domain
MATH	PF00917	54 - 186	1.4e-06	MATH domain
MATH_2	PF22486	211 - 341	1.1e-26	MATH domain
MATH	PF00917	214 - 343	1.2e-07	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008906)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427011 RchiOBHm_Chr4g0427021 RchiOBHm_Chr4g0437151
rosa_laevigata	RLG00000000551 RLG00000007266 RLG00000007267
rosa_multiflora	Rmu_sc0002268.1_g000004 Rmu_sc0010736.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368890 Rroxscaffold_7G00205110
rosa_rugosa	Rorug04G0215500 Rorug04G0217900
rosa_samantha	Rh4AG271100 Rh4AG274100 Rh4BG277300 Rh4BG279800 Rh4CG282700 Rh4CG292000 Rh4DG274700 Rh4DG274800
rosa_wichuraiana	Rw0G012480 Rw0G012490 Rw4G022810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	908
AccII	CGCG	1 cut(s)	545
AciI	CCGC	2 cut(s)	36, 545
AclWI	GGATC	1 cut(s)	156
AcoI	YGGCCR	1 cut(s)	792
AcsI	RAATTY	3 cut(s)	181, 491, 536
AcuI	CTGAAG	2 cut(s)	53, 330
AcyI	GRCGYC	1 cut(s)	501
AfaI	GTAC	1 cut(s)	623
AfiI	CCNNNNNNNGG	1 cut(s)	930
AgsI	TTSAA	3 cut(s)	43, 215, 488
AhlI	ACTAGT	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	105, 814
AjuI	GAANNNNNNNTTGG	1 cut(s)	1032
AluBI	AGCT	2 cut(s)	18, 218
AluI	AGCT	2 cut(s)	18, 218
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	156
AlwNI	CAGNNNCTG	1 cut(s)	76
AoxI	GGCC	3 cut(s)	103, 280, 792
ApoI	RAATTY	3 cut(s)	181, 491, 536
AspLEI	GCGC	2 cut(s)	545, 941
AsuHPI	GGTGA	2 cut(s)	134, 607
BalI	TGGCCA	1 cut(s)	794
BanI	GGYRCC	1 cut(s)	908
BarI	GAAGNNNNNNTAC	2 cut(s)	371, 403
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	1 cut(s)	225
BciT130I	CCWGG	2 cut(s)	107, 816
BciVI	GTATCC	1 cut(s)	218
BclI	TGATCA	1 cut(s)	603
BcuI	ACTAGT	1 cut(s)	238
BfaI	CTAG	3 cut(s)	239, 593, 854
BfuI	GTATCC	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	107, 816
BmiI	GGNNCC	1 cut(s)	910
BmrFI	CCNGG	2 cut(s)	107, 816
BmsI	GCATC	4 cut(s)	185, 394, 883, 1014
BoxI	GACNNNNGTC	1 cut(s)	446
BpmI	CTGGAG	2 cut(s)	240, 798
BpuEI	CTTGAG	1 cut(s)	419
BsaBI	GATNNNNATC	1 cut(s)	121
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	1 cut(s)	924
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	1 cut(s)	930
Bse1I	ACTGG	1 cut(s)	912
Bse8I	GATNNNNATC	1 cut(s)	121
BseBI	CCWGG	2 cut(s)	107, 816
BseDI	CCNNGG	1 cut(s)	924
BseGI	GGATG	1 cut(s)	409
BseJI	GATNNNNATC	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	930
BseNI	ACTGG	1 cut(s)	912
BsgI	GTGCAG	1 cut(s)	1053
Bsh1236I	CGCG	1 cut(s)	545
Bsh1285I	CGRYCG	1 cut(s)	137
BshFI	GGCC	3 cut(s)	105, 282, 794
BshNI	GGYRCC	1 cut(s)	908
BsiEI	CGRYCG	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	246
BslFI	GGGAC	2 cut(s)	221, 900
BslI	CCNNNNNNNGG	1 cut(s)	930
BsmFI	GGGAC	2 cut(s)	221, 900
BsnI	GGCC	3 cut(s)	105, 282, 794
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	6 cut(s)	116, 161, 336, 469, 603, 856
BspACI	CCGC	2 cut(s)	36, 545
BspANI	GGCC	3 cut(s)	105, 282, 794
BspFNI	CGCG	1 cut(s)	545
BspLI	GGNNCC	1 cut(s)	910
BspPI	GGATC	1 cut(s)	156
BspQI	GCTCTTC	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	908
BsrI	ACTGG	1 cut(s)	912
BssECI	CCNNGG	1 cut(s)	924
BssMI	GATC	6 cut(s)	116, 161, 336, 469, 603, 856
BssNI	GRCGYC	1 cut(s)	501
Bst2UI	CCWGG	2 cut(s)	107, 816
Bst4CI	ACNGT	3 cut(s)	151, 512, 657
Bst6I	CTCTTC	4 cut(s)	72, 260, 374, 813
BstACI	GRCGYC	1 cut(s)	501
BstC8I	GCNNGC	2 cut(s)	103, 630
BstDEI	CTNAG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	409
BstFNI	CGCG	1 cut(s)	545
BstHHI	GCGC	2 cut(s)	545, 941
BstKTI	GATC	6 cut(s)	119, 164, 339, 472, 606, 859
BstMBI	GATC	6 cut(s)	116, 161, 336, 469, 603, 856
BstMCI	CGRYCG	1 cut(s)	137
BstNI	CCWGG	2 cut(s)	107, 816
BstPAI	GACNNNNGTC	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	105, 814
BstUI	CGCG	1 cut(s)	545
BsuI	GTATCC	1 cut(s)	218
BsuRI	GGCC	3 cut(s)	105, 282, 794
BtsCI	GGATG	1 cut(s)	409
Cac8I	GCNNGC	2 cut(s)	103, 630
CaiI	CAGNNNCTG	1 cut(s)	76
CfoI	GCGC	2 cut(s)	545, 941
CseI	GACGC	1 cut(s)	509
Csp6I	GTAC	1 cut(s)	622
CspCI	CAANNNNNGTGG	2 cut(s)	692, 727
CviAII	CATG	1 cut(s)	86
CviQI	GTAC	1 cut(s)	622
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	6 cut(s)	118, 163, 338, 471, 605, 858
DpnII	GATC	6 cut(s)	116, 161, 336, 469, 603, 856
EaeI	YGGCCR	1 cut(s)	792
Eam1104I	CTCTTC	4 cut(s)	72, 260, 374, 813
EarI	CTCTTC	4 cut(s)	72, 260, 374, 813
Eco147I	AGGCCT	1 cut(s)	105
Eco57I	CTGAAG	2 cut(s)	53, 330
EcoRII	CCWGG	2 cut(s)	105, 814
FaeI	CATG	1 cut(s)	89
FaiI	YATR	8 cut(s)	87, 429, 438, 602, 675, 771, 783, 845
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FaqI	GGGAC	2 cut(s)	221, 900
FatI	CATG	1 cut(s)	85
FauI	CCCGC	1 cut(s)	29
FbaI	TGATCA	1 cut(s)	603
FokI	GGATG	1 cut(s)	416
FspBI	CTAG	3 cut(s)	239, 593, 854
GlaI	GCGC	2 cut(s)	544, 940
GsuI	CTGGAG	2 cut(s)	240, 798
HaeIII	GGCC	3 cut(s)	105, 282, 794
HgaI	GACGC	1 cut(s)	509
HhaI	GCGC	2 cut(s)	545, 941
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	1 cut(s)	89
Hin6I	GCGC	2 cut(s)	543, 939
HinP1I	GCGC	2 cut(s)	543, 939
HinfI	GANTC	2 cut(s)	139, 721
HphI	GGTGA	2 cut(s)	134, 607
Hpy166II	GTNNAC	2 cut(s)	840, 896
Hpy188I	TCNGA	4 cut(s)	127, 375, 953, 976
Hpy188III	TCNNGA	4 cut(s)	11, 77, 398, 485
Hpy8I	GTNNAC	2 cut(s)	840, 896
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	3 cut(s)	151, 512, 657
HpyCH4V	TGCA	3 cut(s)	101, 1005, 1034
HpyF3I	CTNAG	1 cut(s)	176
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	1 cut(s)	89
HspAI	GCGC	2 cut(s)	543, 939
Ksp22I	TGATCA	1 cut(s)	603
Kzo9I	GATC	6 cut(s)	116, 161, 336, 469, 603, 856
LguI	GCTCTTC	1 cut(s)	374
LmnI	GCTCC	1 cut(s)	636
LweI	GCATC	4 cut(s)	185, 394, 883, 1014
MaeI	CTAG	3 cut(s)	239, 593, 854
MaeIII	GTNAC	2 cut(s)	613, 968
MalI	GATC	6 cut(s)	118, 163, 338, 471, 605, 858
MboI	GATC	6 cut(s)	116, 161, 336, 469, 603, 856
MboII	GAAGA	9 cut(s)	59, 277, 323, 388, 391, 433, 470, 500, 800
MfeI	CAATTG	3 cut(s)	321, 345, 1047
MhlI	GDGCHC	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	794
MluCI	AATT	9 cut(s)	181, 321, 345, 491, 519, 536, 788, 944, 1047
MluNI	TGGCCA	1 cut(s)	794
MmeI	TCCRAC	2 cut(s)	531, 669
Mox20I	TGGCCA	1 cut(s)	794
MscI	TGGCCA	1 cut(s)	794
MseI	TTAA	4 cut(s)	96, 185, 369, 800
Msp20I	TGGCCA	1 cut(s)	794
MspR9I	CCNGG	2 cut(s)	107, 816
MunI	CAATTG	3 cut(s)	321, 345, 1047
MvaI	CCWGG	2 cut(s)	107, 816
MvnI	CGCG	1 cut(s)	545
NdeII	GATC	6 cut(s)	116, 161, 336, 469, 603, 856
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	910
NmeAIII	GCCGAG	1 cut(s)	905
NmuCI	GTSAC	1 cut(s)	613
PceI	AGGCCT	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	374
PfeI	GAWTC	2 cut(s)	139, 721
PshAI	GACNNNNGTC	1 cut(s)	446
Psp6I	CCWGG	2 cut(s)	105, 814
PspGI	CCWGG	2 cut(s)	105, 814
PspN4I	GGNNCC	1 cut(s)	910
PstNI	CAGNNNCTG	1 cut(s)	76
RsaI	GTAC	1 cut(s)	623
RsaNI	GTAC	1 cut(s)	622
SapI	GCTCTTC	1 cut(s)	374
SaqAI	TTAA	4 cut(s)	96, 185, 369, 800
Sau3AI	GATC	6 cut(s)	116, 161, 336, 469, 603, 856
ScrFI	CCNGG	2 cut(s)	107, 816
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	5 cut(s)	20, 220, 552, 680, 926
SfaNI	GCATC	4 cut(s)	185, 394, 883, 1014
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SpeI	ACTAGT	1 cut(s)	238
Sse9I	AATT	9 cut(s)	181, 321, 345, 491, 519, 536, 788, 944, 1047
SseBI	AGGCCT	1 cut(s)	105
SsiI	CCGC	2 cut(s)	36, 545
SspI	AATATT	2 cut(s)	710, 828
SspMI	CTAG	3 cut(s)	239, 593, 854
StuI	AGGCCT	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	105, 814
TaaI	ACNGT	3 cut(s)	151, 512, 657
TaqI	TCGA	2 cut(s)	468, 920
TaqII	GACCGA	1 cut(s)	151
TasI	AATT	9 cut(s)	181, 321, 345, 491, 519, 536, 788, 944, 1047
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	2 cut(s)	139, 721
Tru1I	TTAA	4 cut(s)	96, 185, 369, 800
Tru9I	TTAA	4 cut(s)	96, 185, 369, 800
TseFI	GTSAC	1 cut(s)	613
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	3 cut(s)	144, 681, 937
TspGWI	ACGGA	1 cut(s)	675
XapI	RAATTY	3 cut(s)	181, 491, 536
XspI	CTAG	3 cut(s)	239, 593, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.