Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008906

Physical Location & Seq

Genomic Coordinates Reverse (-)

15181021 .. 15184082

Gene Structure 3062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007266

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCTTAATTTAGATGCCAATAAAAAGGAGAAGAAGTATGTCTTTTATAGGACGATTGTCGGTGGTTCGGCTGGTTTCGATCAGTTTCTTCCTCTTGAAGAATTTACTGACGCCTCCAACGGTTATCTAATTGATGACACTTGTGAATTTGGCGCGGAGGTCTTTGTTTCTAAACAAGCAAGAACAGAAAAAGGAGAGTGTCTAGTGTCTACGATCAAAGATGTCACCAAGTACAAGCGTGCTTGGAGCATTTCCAACTTTTCACAGTTGGCTGATGAACGCTATACCTCAAATCCGTTCTTTTTGACAGACCACAAATATTGCGAATGGAATCTACGACTCTATCCCAATGGAAATAAGTTGGGAAATGGTAGTGGTCATATTTCTGTTTATGTGGAATTGGCCAATTTAAAATCTCTTCCTCCAGGCTCTAAAATATTGGCAGAGTTTACCATACAAATCCTAGATCAAATCAATGGGAAGCATCATTCTACCAAAGCGTGTAAACGCTGGTTCGGTGCCAGTCCCTCGACCTCGGTTTGGGGTTGGGCTCAATTCATCAGACAGGACTTGTTCAGTAACTCGGAGAAAGGATTGTTAGTGAGTGGTTGTTGCATCGTGGAAACAGACATTAAAATCTGTGCGGTAGAACTCACAATTGGGAGCACGTTGACCCTAAAACCCAAAGGGGAGCAACTATCAGGGAAGAGTTCTTCCCCTTCTCAATCTGTGGTCGTATCTGGCTCTTCAACTCTCAGCTCAAGAACCCATTTTGAGGGCAGTTTTCCTGAAACAAATTCACCGGCTGTCAATTATGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

274

Amino Acids

30.12

Weight (kDa)

7.56

Isoelectric Point (pI)

35.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	81 - 211	7.7e-26	MATH domain
MATH	PF00917	84 - 213	1.1e-08	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008906)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427011 RchiOBHm_Chr4g0427021 RchiOBHm_Chr4g0437151
rosa_laevigata	RLG00000000551 RLG00000007266 RLG00000007267
rosa_multiflora	Rmu_sc0002268.1_g000004 Rmu_sc0010736.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368890 Rroxscaffold_7G00205110
rosa_rugosa	Rorug04G0215500 Rorug04G0217900
rosa_samantha	Rh4AG271100 Rh4AG274100 Rh4BG277300 Rh4BG279800 Rh4CG282700 Rh4CG292000 Rh4DG274700 Rh4DG274800
rosa_wichuraiana	Rw0G012480 Rw0G012490 Rw4G022810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	518
AccI	GTMKAC	1 cut(s)	209
AccII	CGCG	1 cut(s)	155
AciI	CCGC	2 cut(s)	155, 644
AcoI	YGGCCR	1 cut(s)	402
AcsI	RAATTY	3 cut(s)	101, 146, 796
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	540, 775
AgsI	TTSAA	2 cut(s)	98, 750
AjnI	CCWGG	1 cut(s)	424
AjuI	GAANNNNNNNTTGG	2 cut(s)	642, 674
AluBI	AGCT	1 cut(s)	759
AluI	AGCT	1 cut(s)	759
Alw21I	GWGCWC	1 cut(s)	668
AoxI	GGCC	1 cut(s)	402
ApoI	RAATTY	3 cut(s)	101, 146, 796
AspLEI	GCGC	1 cut(s)	155
AsuHPI	GGTGA	2 cut(s)	217, 792
BalI	TGGCCA	1 cut(s)	404
BanI	GGYRCC	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	553
Bbv12I	GWGCWC	1 cut(s)	668
BciT130I	CCWGG	1 cut(s)	426
BfaI	CTAG	2 cut(s)	203, 464
Bme1390I	CCNGG	1 cut(s)	426
BmiI	GGNNCC	1 cut(s)	520
BmrFI	CCNGG	1 cut(s)	426
BmsI	GCATC	3 cut(s)	4, 493, 624
BoxI	GACNNNNGTC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	745
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	534
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	2 cut(s)	540, 775
Bse118I	RCCGGY	1 cut(s)	802
Bse1I	ACTGG	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	534
BseLI	CCNNNNNNNGG	2 cut(s)	540, 775
BseMII	CTCAG	1 cut(s)	769
BseNI	ACTGG	1 cut(s)	522
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	404
BshNI	GGYRCC	1 cut(s)	518
BsiHKAI	GWGCWC	1 cut(s)	668
BsiSI	CCGG	1 cut(s)	803
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	2 cut(s)	540, 775
BsmFI	GGGAC	1 cut(s)	510
BsnI	GGCC	1 cut(s)	404
Bsp1286I	GDGCHC	2 cut(s)	553, 668
Bsp143I	GATC	3 cut(s)	79, 213, 466
BspACI	CCGC	2 cut(s)	155, 644
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	1 cut(s)	768
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	520
BspQI	GCTCTTC	1 cut(s)	751
BspT107I	GGYRCC	1 cut(s)	518
BsrFI	RCCGGY	1 cut(s)	802
BsrI	ACTGG	1 cut(s)	522
BssAI	RCCGGY	1 cut(s)	802
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	3 cut(s)	79, 213, 466
BssNI	GRCGYC	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	2 cut(s)	122, 267
Bst6I	CTCTTC	3 cut(s)	423, 701, 751
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	755
BstFNI	CGCG	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	3 cut(s)	82, 216, 469
BstMBI	GATC	3 cut(s)	79, 213, 466
BstNI	CCWGG	1 cut(s)	426
BstPAI	GACNNNNGTC	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	424
BstUI	CGCG	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	404
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	1 cut(s)	802
CseI	GACGC	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	232
CspCI	CAANNNNNGTGG	2 cut(s)	302, 337
CviJI	RGCY	8 cut(s)	71, 272, 404, 429, 551, 744, 759, 806
CviKI_1	RGCY	8 cut(s)	71, 272, 404, 429, 551, 744, 759, 806
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	1 cut(s)	755
DpnI	GATC	3 cut(s)	81, 215, 468
DpnII	GATC	3 cut(s)	79, 213, 466
DraI	TTTAAA	1 cut(s)	411
EaeI	YGGCCR	1 cut(s)	402
Eam1104I	CTCTTC	3 cut(s)	423, 701, 751
EarI	CTCTTC	3 cut(s)	423, 701, 751
Eco24I	GRGCYC	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	424
EcoT38I	GRGCYC	1 cut(s)	553
FaiI	YATR	7 cut(s)	39, 48, 285, 381, 393, 455, 816
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	1 cut(s)	510
FblI	GTMKAC	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	553
FspBI	CTAG	2 cut(s)	203, 464
GlaI	GCGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	408
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	1 cut(s)	803
HgaI	GACGC	1 cut(s)	119
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	111
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	672
HindII	GTYRAC	1 cut(s)	672
HinfI	GANTC	2 cut(s)	331, 339
HpaII	CCGG	1 cut(s)	803
HphI	GGTGA	2 cut(s)	217, 792
Hpy166II	GTNNAC	4 cut(s)	210, 450, 506, 672
Hpy188I	TCNGA	2 cut(s)	563, 586
Hpy188III	TCNNGA	3 cut(s)	95, 762, 788
Hpy8I	GTNNAC	4 cut(s)	210, 450, 506, 672
HpyAV	CCTTC	1 cut(s)	729
HpyCH4III	ACNGT	2 cut(s)	122, 267
HpyCH4IV	ACGT	1 cut(s)	668
HpyCH4V	TGCA	1 cut(s)	615
HpyF3I	CTNAG	1 cut(s)	755
HpySE526I	ACGT	1 cut(s)	668
Hsp92I	GRCGYC	1 cut(s)	111
HspAI	GCGC	1 cut(s)	153
Kzo9I	GATC	3 cut(s)	79, 213, 466
LguI	GCTCTTC	1 cut(s)	751
LmnI	GCTCC	3 cut(s)	246, 663, 691
LweI	GCATC	3 cut(s)	4, 493, 624
MaeI	CTAG	2 cut(s)	203, 464
MaeII	ACGT	1 cut(s)	668
MaeIII	GTNAC	2 cut(s)	223, 578
MalI	GATC	3 cut(s)	81, 215, 468
MboI	GATC	3 cut(s)	79, 213, 466
MboII	GAAGA	7 cut(s)	43, 80, 110, 410, 705, 718, 738
MfeI	CAATTG	1 cut(s)	657
MhlI	GDGCHC	2 cut(s)	553, 668
MlsI	TGGCCA	1 cut(s)	404
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	2 cut(s)	141, 279
MnlI	CCTC	8 cut(s)	102, 124, 151, 298, 432, 538, 544, 769
Mox20I	TGGCCA	1 cut(s)	404
MscI	TGGCCA	1 cut(s)	404
MseI	TTAA	3 cut(s)	6, 410, 633
Msp20I	TGGCCA	1 cut(s)	404
MspI	CCGG	1 cut(s)	803
MspR9I	CCNGG	1 cut(s)	426
MunI	CAATTG	1 cut(s)	657
MvaI	CCWGG	1 cut(s)	426
MvnI	CGCG	1 cut(s)	155
NdeII	GATC	3 cut(s)	79, 213, 466
NlaIV	GGNNCC	1 cut(s)	520
NmuCI	GTSAC	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	751
PfeI	GAWTC	1 cut(s)	331
PleI	GAGTC	1 cut(s)	333
PpsI	GAGTC	1 cut(s)	333
PshAI	GACNNNNGTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	520
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	751
SaqAI	TTAA	3 cut(s)	6, 410, 633
Sau3AI	GATC	3 cut(s)	79, 213, 466
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	1 cut(s)	426
SduI	GDGCHC	2 cut(s)	553, 668
SetI	ASST	5 cut(s)	162, 290, 536, 671, 761
SfaNI	GCATC	3 cut(s)	4, 493, 624
SmlI	CTYRAG	1 cut(s)	760
SmoI	CTYRAG	1 cut(s)	760
SsiI	CCGC	2 cut(s)	155, 644
SspI	AATATT	2 cut(s)	320, 438
SspMI	CTAG	2 cut(s)	203, 464
StyD4I	CCNGG	1 cut(s)	424
TaaI	ACNGT	2 cut(s)	122, 267
TaiI	ACGT	1 cut(s)	671
TaqI	TCGA	2 cut(s)	78, 530
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	3 cut(s)	6, 410, 633
Tru9I	TTAA	3 cut(s)	6, 410, 633
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	291, 547
TspGWI	ACGGA	1 cut(s)	285
XapI	RAATTY	3 cut(s)	101, 146, 796
XmiI	GTMKAC	1 cut(s)	209
XspI	CTAG	2 cut(s)	203, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.