Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008906

Physical Location & Seq

Genomic Coordinates Reverse (-)

54649749 .. 54651774

Gene Structure 2026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00205110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGTCTGCAGTCTACACTTCGCTCCTCGCAGCGAATTTCAATCTTCCTATGATGCGGAGAAGAATAGGTACTTCCCCGACAAGGGCCCAATTCCCGGTTCTCGTAGTACTGCTGCTGCTTCTTCTAGTGCTCAGAAACTGAATCAGAGTTGCAGATTTGCAGATTTGTGCACTTGTCTAGTTGTCATGGAGGTTTGGACTTGTGGAGCAAGGCAGCAGGCCAAGCAACTAGAGCCTAAAGGCCTAGAGCAGTGCAGCTTCAGTTATTTCTTAGTTGGACAGTTTGACTATTTGTGCAAAACTGCAAATTGTGTTTATGTTTCTGTTGGACAATTTGGATTGTTTTCTGTTGGACAATGTATTCTGGACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0006139 GO:0006396 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0019538 GO:0030532 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0071011 GO:0071013 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1901564 GO:1902494 GO:1990234 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

124

Amino Acids

13.68

Weight (kDa)

7.47

Isoelectric Point (pI)

41.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008906)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427011 RchiOBHm_Chr4g0427021 RchiOBHm_Chr4g0437151
rosa_laevigata	RLG00000000551 RLG00000007266 RLG00000007267
rosa_multiflora	Rmu_sc0002268.1_g000004 Rmu_sc0010736.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368890 Rroxscaffold_7G00205110
rosa_rugosa	Rorug04G0215500 Rorug04G0217900
rosa_samantha	Rh4AG271100 Rh4AG274100 Rh4BG277300 Rh4BG279800 Rh4CG282700 Rh4CG292000 Rh4DG274700 Rh4DG274800
rosa_wichuraiana	Rw0G012480 Rw0G012490 Rw4G022810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	13
AciI	CCGC	1 cut(s)	56
AcsI	RAATTY	1 cut(s)	35
AcuI	CTGAAG	1 cut(s)	244
AfaI	GTAC	2 cut(s)	71, 109
AfiI	CCNNNNNNNGG	3 cut(s)	82, 83, 95
AgsI	TTSAA	1 cut(s)	41
AjuI	GAANNNNNNNTTGG	2 cut(s)	82, 114
AluBI	AGCT	1 cut(s)	258
AluI	AGCT	1 cut(s)	258
Alw21I	GWGCWC	2 cut(s)	133, 173
Alw44I	GTGCAC	1 cut(s)	169
AlwNI	CAGNNNCTG	1 cut(s)	139
AoxI	GGCC	3 cut(s)	85, 219, 241
ApaI	GGGCCC	1 cut(s)	89
ApaLI	GTGCAC	1 cut(s)	169
ApeKI	GCWGC	5 cut(s)	30, 113, 116, 214, 255
ApoI	RAATTY	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	85, 86
AsuC2I	CCSGG	1 cut(s)	96
BaeGI	GKGCMC	2 cut(s)	89, 173
BanII	GRGCYC	1 cut(s)	89
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
Bbv12I	GWGCWC	2 cut(s)	133, 173
BbvI	GCAGC	5 cut(s)	42, 100, 103, 226, 267
BcnI	CCSGG	1 cut(s)	96
BfaI	CTAG	4 cut(s)	126, 179, 230, 245
BfmI	CTRYAG	1 cut(s)	7
BisI	GCNGC	5 cut(s)	31, 114, 117, 215, 256
BlsI	GCNGC	5 cut(s)	32, 115, 118, 216, 257
BmcAI	AGTACT	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	96
BmgT120I	GGNCC	2 cut(s)	85, 86
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	3 cut(s)	82, 83, 95
BseLI	CCNNNNNNNGG	3 cut(s)	82, 83, 95
BseMII	CTCAG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	15
BseSI	GKGCMC	2 cut(s)	89, 173
BseXI	GCAGC	5 cut(s)	42, 100, 103, 226, 267
BsgI	GTGCAG	1 cut(s)	274
BshFI	GGCC	3 cut(s)	87, 221, 243
BsiHKAI	GWGCWC	2 cut(s)	133, 173
BsiSI	CCGG	1 cut(s)	96
BslI	CCNNNNNNNGG	3 cut(s)	82, 83, 95
BsnI	GGCC	3 cut(s)	87, 221, 243
Bsp120I	GGGCCC	1 cut(s)	85
Bsp1286I	GDGCHC	3 cut(s)	89, 133, 173
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	3 cut(s)	87, 221, 243
BspCNI	CTCAG	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	87
BspMAI	CTGCAG	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	2 cut(s)	132, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	223, 232
BstSCI	CCNGG	1 cut(s)	94
BstSFI	CTRYAG	1 cut(s)	7
BstSLI	GKGCMC	2 cut(s)	89, 173
BstV1I	GCAGC	5 cut(s)	42, 100, 103, 226, 267
BsuRI	GGCC	3 cut(s)	87, 221, 243
BtsI	GCAGTG	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	257
Cac8I	GCNNGC	1 cut(s)	219
CaiI	CAGNNNCTG	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	85, 86
Csp6I	GTAC	2 cut(s)	70, 108
CviAII	CATG	1 cut(s)	187
CviJI	RGCY	5 cut(s)	87, 221, 235, 243, 258
CviKI_1	RGCY	5 cut(s)	87, 221, 235, 243, 258
CviQI	GTAC	2 cut(s)	70, 108
DdeI	CTNAG	2 cut(s)	132, 271
Eco147I	AGGCCT	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	85
EcoT38I	GRGCYC	1 cut(s)	89
FaeI	CATG	1 cut(s)	190
FaiI	YATR	3 cut(s)	51, 188, 318
FatI	CATG	1 cut(s)	186
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	5 cut(s)	31, 114, 117, 215, 256
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	5 cut(s)	31, 114, 117, 215, 256
FspBI	CTAG	4 cut(s)	126, 179, 230, 245
GluI	GCNGC	5 cut(s)	31, 114, 117, 215, 256
HaeIII	GGCC	3 cut(s)	87, 221, 243
HapII	CCGG	1 cut(s)	96
Hin1II	CATG	1 cut(s)	190
HinfI	GANTC	2 cut(s)	142, 368
HpaII	CCGG	1 cut(s)	96
Hpy166II	GTNNAC	2 cut(s)	14, 171
Hpy188I	TCNGA	2 cut(s)	135, 147
Hpy188III	TCNNGA	2 cut(s)	365, 372
Hpy8I	GTNNAC	2 cut(s)	14, 171
HpyCH4III	ACNGT	1 cut(s)	282
HpyCH4V	TGCA	7 cut(s)	9, 153, 161, 171, 255, 297, 305
HpyF10VI	GCNNNNNNNGC	2 cut(s)	223, 232
HpyF3I	CTNAG	2 cut(s)	132, 271
Hsp92II	CATG	1 cut(s)	190
LmnI	GCTCC	2 cut(s)	28, 206
LpnPI	CCDG	3 cut(s)	109, 203, 350
Lsp1109I	GCAGC	5 cut(s)	42, 100, 103, 226, 267
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	4 cut(s)	126, 179, 230, 245
MboII	GAAGA	3 cut(s)	36, 73, 114
MhlI	GDGCHC	3 cut(s)	89, 133, 173
MluCI	AATT	4 cut(s)	35, 90, 307, 332
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	3 cut(s)	256, 307, 331
MnlI	CCTC	2 cut(s)	36, 184
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	2 cut(s)	223, 232
NciI	CCSGG	1 cut(s)	96
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	1 cut(s)	87
PceI	AGGCCT	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	5 cut(s)	32, 115, 118, 216, 257
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	87
PspOMI	GGGCCC	1 cut(s)	85
PspPI	GGNCC	2 cut(s)	85, 86
PstI	CTGCAG	1 cut(s)	11
PstNI	CAGNNNCTG	1 cut(s)	139
RsaI	GTAC	2 cut(s)	71, 109
RsaNI	GTAC	2 cut(s)	70, 108
SatI	GCNGC	5 cut(s)	31, 114, 117, 215, 256
Sau96I	GGNCC	2 cut(s)	85, 86
ScaI	AGTACT	1 cut(s)	109
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	1 cut(s)	96
SduI	GDGCHC	3 cut(s)	89, 133, 173
SetI	ASST	3 cut(s)	71, 195, 260
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	7
Sse9I	AATT	4 cut(s)	35, 90, 307, 332
SseBI	AGGCCT	1 cut(s)	243
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	4 cut(s)	126, 179, 230, 245
StuI	AGGCCT	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	282
TasI	AATT	4 cut(s)	35, 90, 307, 332
TatI	WGTACW	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	142
TscAI	CASTG	1 cut(s)	257
TseI	GCWGC	5 cut(s)	30, 113, 116, 214, 255
TspRI	CASTG	1 cut(s)	257
VneI	GTGCAC	1 cut(s)	169
XapI	RAATTY	1 cut(s)	35
XmiI	GTMKAC	1 cut(s)	13
XspI	CTAG	4 cut(s)	126, 179, 230, 245
ZrmI	AGTACT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.