Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008906

Physical Location & Seq

Genomic Coordinates Reverse (-)

54011849 .. 54012582

Gene Structure 734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG282700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGACTGAACTTTCGGTGGATGGATATGAAGCGGAGGTGTTCGAAGGTGGAGGGTACAAATGGAAACTGGTAATCTACCCAAATGGAAGCAAGAAAAGAAATGTGGCAGACCATATCTCCCTCTACTTGGAACTGGCTGGAGTAAATTCACTACAGAGTGATTGCGAAATATATGCTGATTTCAGATTCTTTTTACTTGATCGGAAAAAGGGCAAGTACTTAGTTGTTGAAGGTATTATCTATCTAAACCAGTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

86

Amino Acids

9.89

Weight (kDa)

5.28

Isoelectric Point (pI)

24.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	7 - 75	1.4e-15	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008906)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427011 RchiOBHm_Chr4g0427021 RchiOBHm_Chr4g0437151
rosa_laevigata	RLG00000000551 RLG00000007266 RLG00000007267
rosa_multiflora	Rmu_sc0002268.1_g000004 Rmu_sc0010736.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368890 Rroxscaffold_7G00205110
rosa_rugosa	Rorug04G0215500 Rorug04G0217900
rosa_samantha	Rh4AG271100 Rh4AG274100 Rh4BG277300 Rh4BG279800 Rh4CG282700 Rh4CG292000 Rh4DG274700 Rh4DG274800
rosa_wichuraiana	Rw0G012480 Rw0G012490 Rw4G022810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	145
AfaI	GTAC	2 cut(s)	56, 218
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	2 cut(s)	230, 256
ApoI	RAATTY	1 cut(s)	145
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AsuII	TTCGAA	1 cut(s)	42
BccI	CCATC	1 cut(s)	14
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BfmI	CTRYAG	1 cut(s)	152
BmcAI	AGTACT	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	3 cut(s)	72, 138, 250
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseNI	ACTGG	3 cut(s)	72, 138, 250
BslI	CCNNNNNNNGG	1 cut(s)	127
Bsp119I	TTCGAA	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	199
BspACI	CCGC	1 cut(s)	32
BspT104I	TTCGAA	1 cut(s)	42
BsrI	ACTGG	3 cut(s)	72, 138, 250
BssMI	GATC	1 cut(s)	199
BstBI	TTCGAA	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstSFI	CTRYAG	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	25
Csp6I	GTAC	2 cut(s)	55, 217
CviJI	RGCY	1 cut(s)	137
CviKI_1	RGCY	1 cut(s)	137
CviQI	GTAC	2 cut(s)	55, 217
DdeI	CTNAG	1 cut(s)	220
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
FaiI	YATR	4 cut(s)	27, 114, 172, 174
FokI	GGATG	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	159
HinfI	GANTC	1 cut(s)	186
Hpy188I	TCNGA	2 cut(s)	185, 204
HpyAV	CCTTC	2 cut(s)	38, 224
HpyF3I	CTNAG	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	3 cut(s)	53, 119, 123
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MluCI	AATT	2 cut(s)	145, 256
MnlI	CCTC	3 cut(s)	28, 44, 131
MseI	TTAA	1 cut(s)	259
NdeII	GATC	1 cut(s)	199
NspV	TTCGAA	1 cut(s)	42
PfeI	GAWTC	1 cut(s)	186
RsaI	GTAC	2 cut(s)	56, 218
RsaNI	GTAC	2 cut(s)	55, 217
SaqAI	TTAA	1 cut(s)	259
Sau3AI	GATC	1 cut(s)	199
ScaI	AGTACT	1 cut(s)	218
SetI	ASST	3 cut(s)	39, 49, 235
SfcI	CTRYAG	1 cut(s)	152
SfuI	TTCGAA	1 cut(s)	42
SgeI	CNNG	7 cut(s)	80, 103, 139, 146, 150, 209, 226
Sse9I	AATT	2 cut(s)	145, 256
SsiI	CCGC	1 cut(s)	32
TaqI	TCGA	1 cut(s)	42
TasI	AATT	2 cut(s)	145, 256
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	1 cut(s)	259
Tru9I	TTAA	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	42
XapI	RAATTY	1 cut(s)	145
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.