Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010736.1

Orthogroup ID

OG0008906

Physical Location & Seq

Genomic Coordinates Reverse (-)

1190 .. 1513

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010736.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

atgcttgatgtttcgttttctctgttggatagatacgaatcaacggagtttgaggcaggaggatacaggaggaaactagtgctcttcccaaatggaaacaaagaacgcaacgtggataaccacgtctctctatacttggagatgtgcggagaaaaagctataagagccgggtacattatcacggtggattacaagttctttttgcttaatcaaaagtggaaaagctacctagttcttgaagatgtcaacaaaaaggagaagtattctatctataaaaccattgttggtggtttggctggttttgatcgattcatatccctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

107

Amino Acids

12.49

Weight (kDa)

8.62

Isoelectric Point (pI)

16.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008906)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427011 RchiOBHm_Chr4g0427021 RchiOBHm_Chr4g0437151
rosa_laevigata	RLG00000000551 RLG00000007266 RLG00000007267
rosa_multiflora	Rmu_sc0002268.1_g000004 Rmu_sc0010736.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368890 Rroxscaffold_7G00205110
rosa_rugosa	Rorug04G0215500 Rorug04G0217900
rosa_samantha	Rh4AG271100 Rh4AG274100 Rh4BG277300 Rh4BG279800 Rh4CG282700 Rh4CG292000 Rh4DG274700 Rh4DG274800
rosa_wichuraiana	Rw0G012480 Rw0G012490 Rw4G022810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	239
AhlI	ACTAGT	1 cut(s)	76
AjiI	CACGTC	1 cut(s)	124
AloI	GAACNNNNNNTCC	2 cut(s)	179, 211
AluBI	AGCT	2 cut(s)	158, 225
AluI	AGCT	2 cut(s)	158, 225
Alw21I	GWGCWC	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	130
AsuC2I	CCSGG	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	84
BciVI	GTATCC	1 cut(s)	56
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	130
BcuI	ACTAGT	1 cut(s)	76
BfaI	CTAG	3 cut(s)	77, 230, 322
BfuI	GTATCC	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	169
BmgBI	CACGTC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	169
BpuMI	CCSGG	1 cut(s)	169
Bsa29I	ATCGAT	1 cut(s)	307
BsaBI	GATNNNNATC	2 cut(s)	37, 313
Bse8I	GATNNNNATC	2 cut(s)	37, 313
BseCI	ATCGAT	1 cut(s)	307
BseJI	GATNNNNATC	2 cut(s)	37, 313
BshVI	ATCGAT	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	168
BsmAI	GTCTC	1 cut(s)	130
BsmBI	CGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	304
BspACI	CCGC	1 cut(s)	147
BspDI	ATCGAT	1 cut(s)	307
BspQI	GCTCTTC	1 cut(s)	89
BssMI	GATC	1 cut(s)	304
Bst4CI	ACNGT	1 cut(s)	184
Bst6I	CTCTTC	1 cut(s)	89
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	167
Bsu15I	ATCGAT	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	56
BsuTUI	ATCGAT	1 cut(s)	307
BtrI	CACGTC	1 cut(s)	124
ClaI	ATCGAT	1 cut(s)	307
Csp6I	GTAC	1 cut(s)	172
CviJI	RGCY	4 cut(s)	158, 167, 225, 296
CviKI_1	RGCY	4 cut(s)	158, 167, 225, 296
CviQI	GTAC	1 cut(s)	172
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Esp3I	CGTCTC	1 cut(s)	130
FaiI	YATR	4 cut(s)	133, 161, 273, 314
FspBI	CTAG	3 cut(s)	77, 230, 322
HapII	CCGG	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	2 cut(s)	38, 309
HpaII	CCGG	1 cut(s)	168
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	1 cut(s)	247
HpyCH4III	ACNGT	1 cut(s)	184
HpyCH4IV	ACGT	2 cut(s)	111, 123
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpySE526I	ACGT	2 cut(s)	111, 123
Kzo9I	GATC	1 cut(s)	304
LguI	GCTCTTC	1 cut(s)	89
LpnPI	CCDG	4 cut(s)	42, 52, 181, 282
MaeI	CTAG	3 cut(s)	77, 230, 322
MaeII	ACGT	2 cut(s)	111, 123
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	2 cut(s)	76, 251
MhlI	GDGCHC	1 cut(s)	84
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	3 cut(s)	46, 53, 63
MseI	TTAA	1 cut(s)	207
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	164
NciI	CCSGG	1 cut(s)	169
NdeII	GATC	1 cut(s)	304
PciSI	GCTCTTC	1 cut(s)	89
PfeI	GAWTC	2 cut(s)	38, 309
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	304
ScrFI	CCNGG	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	5 cut(s)	114, 126, 160, 227, 231
SpeI	ACTAGT	1 cut(s)	76
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	3 cut(s)	77, 230, 322
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	184
TaiI	ACGT	2 cut(s)	114, 126
TaqI	TCGA	1 cut(s)	307
TfiI	GAWTC	2 cut(s)	38, 309
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TspDTI	ATGAA	1 cut(s)	301
TspGWI	ACGGA	1 cut(s)	59
XspI	CTAG	3 cut(s)	77, 230, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.