Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0008906

Physical Location & Seq

Genomic Coordinates Forward (+)

58997523 .. 59000366

Gene Structure 2844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG274100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCTATTCTTGACCGCTTTTTTCGGTGTTTTGGCGGGTCGAAGCCAATAGAAAAGGCTACTACTCTTCAGCCTCTGGACTTACATGATGACTTTAATGCAGGCCTGGTTTTGAGATCAACATCAGATGAACGACCGATTCACCACACCGTAAAAATACGATCCTTTTCTTTGCTAAGAAATTTAATGGATAGATGCGAAGTAGGGGACTTTGAAGCTGGAGGATACAGATGGAAACTAGTGCTCTGCCCGAATGGAAACAAAAAGAGGAATGTGGGAGGCCACATCTCTCTCTACTTAGAAATGGCTGAAGAAAAACCAATTGAGCCTGACCAGATCGTAGCAATTGATTTCAGATTGTTTTTGCTTAATCAGAAGAAGAGCAACTACTTGGTTCTAGAGGATGCCAATAAAAAAGAGAAGAAGTATGTCTTTTATAGGACGATTGTCGGTGGTTCGGTTGGTTTCGATCAGTTTCTTCCTCTTGAAGAATTTACTGATGCCTCCAACGGTTATCTAATTGATGACACTTGTGAATTTGGCGCGGAGGTCTTTGTTTCTAAACAAGTAAGAACAGGAAAAGGAGAGTGTCTAGTGTCTATGATCAAAGATGTCACTAAGTACAAGCATGCTTGGAGGATTTCCAACTTTTCACAGTTGGCCGATGAACACTATACCTCAAATCCGTTCTTTTTTGCAGACCACTATTATTGCGAATGGTCTGTTGTTGGTAAATCCCGTAGCAATATTACCCACTTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

254

Amino Acids

29.2

Weight (kDa)

7.08

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	48 - 184	7.9e-28	MATH domain
MATH	PF00917	54 - 186	4.2e-07	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0008906)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427011 RchiOBHm_Chr4g0427021 RchiOBHm_Chr4g0437151
rosa_laevigata	RLG00000000551 RLG00000007266 RLG00000007267
rosa_multiflora	Rmu_sc0002268.1_g000004 Rmu_sc0010736.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368890 Rroxscaffold_7G00205110
rosa_rugosa	Rorug04G0215500 Rorug04G0217900
rosa_samantha	Rh4AG271100 Rh4AG274100 Rh4BG277300 Rh4BG279800 Rh4CG282700 Rh4CG292000 Rh4DG274700 Rh4DG274800
rosa_wichuraiana	Rw0G012480 Rw0G012490 Rw4G022810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	545
AciI	CCGC	3 cut(s)	16, 36, 545
AclWI	GGATC	1 cut(s)	156
AcoI	YGGCCR	1 cut(s)	660
AcsI	RAATTY	3 cut(s)	181, 491, 536
AcuI	CTGAAG	2 cut(s)	53, 330
AfaI	GTAC	1 cut(s)	623
AgsI	TTSAA	3 cut(s)	215, 488, 760
AhlI	ACTAGT	1 cut(s)	238
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	156
AlwNI	CAGNNNCTG	1 cut(s)	76
AoxI	GGCC	3 cut(s)	103, 280, 660
ApoI	RAATTY	3 cut(s)	181, 491, 536
AspLEI	GCGC	1 cut(s)	545
AsuHPI	GGTGA	1 cut(s)	134
BarI	GAAGNNNNNNTAC	2 cut(s)	371, 403
Bbv12I	GWGCWC	1 cut(s)	246
BccI	CCATC	1 cut(s)	225
BciT130I	CCWGG	1 cut(s)	107
BciVI	GTATCC	1 cut(s)	218
BclI	TGATCA	1 cut(s)	603
BcuI	ACTAGT	1 cut(s)	238
BfaI	CTAG	3 cut(s)	239, 398, 593
BfuI	GTATCC	1 cut(s)	218
Bme1390I	CCNGG	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	107
BmsI	GCATC	3 cut(s)	185, 394, 490
BoxI	GACNNNNGTC	1 cut(s)	446
BpmI	CTGGAG	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	121
Bse8I	GATNNNNATC	1 cut(s)	121
BseBI	CCWGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	409
BseJI	GATNNNNATC	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	545
Bsh1285I	CGRYCG	1 cut(s)	137
BshFI	GGCC	3 cut(s)	105, 282, 662
BsiEI	CGRYCG	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	3 cut(s)	105, 282, 662
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	5 cut(s)	116, 161, 336, 469, 603
BspACI	CCGC	3 cut(s)	16, 36, 545
BspANI	GGCC	3 cut(s)	105, 282, 662
BspFNI	CGCG	1 cut(s)	545
BspPI	GGATC	1 cut(s)	156
BspQI	GCTCTTC	1 cut(s)	374
BssMI	GATC	5 cut(s)	116, 161, 336, 469, 603
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	3 cut(s)	151, 512, 657
Bst6I	CTCTTC	2 cut(s)	72, 374
BstC8I	GCNNGC	2 cut(s)	103, 630
BstDEI	CTNAG	3 cut(s)	176, 298, 618
BstF5I	GGATG	1 cut(s)	409
BstFNI	CGCG	1 cut(s)	545
BstHHI	GCGC	1 cut(s)	545
BstKTI	GATC	5 cut(s)	119, 164, 339, 472, 606
BstMBI	GATC	5 cut(s)	116, 161, 336, 469, 603
BstMCI	CGRYCG	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	632
BstPAI	GACNNNNGTC	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	105
BstUI	CGCG	1 cut(s)	545
BsuI	GTATCC	1 cut(s)	218
BsuRI	GGCC	3 cut(s)	105, 282, 662
BtsCI	GGATG	1 cut(s)	409
Cac8I	GCNNGC	2 cut(s)	103, 630
CaiI	CAGNNNCTG	1 cut(s)	76
CfoI	GCGC	1 cut(s)	545
Csp6I	GTAC	1 cut(s)	622
CspCI	CAANNNNNGTGG	2 cut(s)	692, 727
CviAII	CATG	2 cut(s)	86, 629
CviQI	GTAC	1 cut(s)	622
DdeI	CTNAG	3 cut(s)	176, 298, 618
DpnI	GATC	5 cut(s)	118, 163, 338, 471, 605
DpnII	GATC	5 cut(s)	116, 161, 336, 469, 603
EaeI	YGGCCR	1 cut(s)	660
Eam1104I	CTCTTC	2 cut(s)	72, 374
EarI	CTCTTC	2 cut(s)	72, 374
Eco147I	AGGCCT	1 cut(s)	105
Eco57I	CTGAAG	2 cut(s)	53, 330
EcoRII	CCWGG	1 cut(s)	105
FaeI	CATG	2 cut(s)	89, 632
FaiI	YATR	6 cut(s)	87, 429, 438, 602, 630, 675
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	2 cut(s)	85, 628
FauI	CCCGC	1 cut(s)	29
FbaI	TGATCA	1 cut(s)	603
FokI	GGATG	1 cut(s)	416
FspBI	CTAG	3 cut(s)	239, 398, 593
GlaI	GCGC	1 cut(s)	544
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	3 cut(s)	105, 282, 662
HhaI	GCGC	1 cut(s)	545
Hin1II	CATG	2 cut(s)	89, 632
Hin6I	GCGC	1 cut(s)	543
HinP1I	GCGC	1 cut(s)	543
HinfI	GANTC	1 cut(s)	139
HphI	GGTGA	1 cut(s)	134
Hpy188I	TCNGA	3 cut(s)	127, 356, 375
Hpy188III	TCNNGA	4 cut(s)	11, 77, 398, 485
HpyCH4III	ACNGT	3 cut(s)	151, 512, 657
HpyCH4V	TGCA	2 cut(s)	101, 698
HpyF3I	CTNAG	3 cut(s)	176, 298, 618
Hsp92II	CATG	2 cut(s)	89, 632
HspAI	GCGC	1 cut(s)	543
Ksp22I	TGATCA	1 cut(s)	603
Kzo9I	GATC	5 cut(s)	116, 161, 336, 469, 603
LguI	GCTCTTC	1 cut(s)	374
LpnPI	CCDG	8 cut(s)	62, 87, 92, 119, 204, 342, 347, 561
LweI	GCATC	3 cut(s)	185, 394, 490
MaeI	CTAG	3 cut(s)	239, 398, 593
MaeIII	GTNAC	1 cut(s)	613
MalI	GATC	5 cut(s)	118, 163, 338, 471, 605
MboI	GATC	5 cut(s)	116, 161, 336, 469, 603
MboII	GAAGA	7 cut(s)	59, 323, 388, 391, 433, 470, 500
MfeI	CAATTG	2 cut(s)	321, 345
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	6 cut(s)	181, 321, 345, 491, 519, 536
MmeI	TCCRAC	2 cut(s)	531, 669
MseI	TTAA	3 cut(s)	96, 185, 369
MspR9I	CCNGG	1 cut(s)	107
MunI	CAATTG	2 cut(s)	321, 345
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	545
NdeII	GATC	5 cut(s)	116, 161, 336, 469, 603
NlaIII	CATG	2 cut(s)	89, 632
NmuCI	GTSAC	1 cut(s)	613
NspI	RCATGY	1 cut(s)	632
PaeI	GCATGC	1 cut(s)	632
PceI	AGGCCT	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	374
PfeI	GAWTC	1 cut(s)	139
PshAI	GACNNNNGTC	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PstNI	CAGNNNCTG	1 cut(s)	76
RsaI	GTAC	1 cut(s)	623
RsaNI	GTAC	1 cut(s)	622
SapI	GCTCTTC	1 cut(s)	374
SaqAI	TTAA	3 cut(s)	96, 185, 369
Sau3AI	GATC	5 cut(s)	116, 161, 336, 469, 603
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	3 cut(s)	220, 552, 680
SfaNI	GCATC	3 cut(s)	185, 394, 490
SpeI	ACTAGT	1 cut(s)	238
SphI	GCATGC	1 cut(s)	632
Sse9I	AATT	6 cut(s)	181, 321, 345, 491, 519, 536
SseBI	AGGCCT	1 cut(s)	105
SsiI	CCGC	3 cut(s)	16, 36, 545
SspI	AATATT	1 cut(s)	748
SspMI	CTAG	3 cut(s)	239, 398, 593
StuI	AGGCCT	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	105
TaaI	ACNGT	3 cut(s)	151, 512, 657
TaqI	TCGA	2 cut(s)	41, 468
TaqII	GACCGA	1 cut(s)	151
TasI	AATT	6 cut(s)	181, 321, 345, 491, 519, 536
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	3 cut(s)	96, 185, 369
Tru9I	TTAA	3 cut(s)	96, 185, 369
TseFI	GTSAC	1 cut(s)	613
Tsp45I	GTSAC	1 cut(s)	613
TspDTI	ATGAA	2 cut(s)	144, 681
TspGWI	ACGGA	1 cut(s)	675
XapI	RAATTY	3 cut(s)	181, 491, 536
XbaI	TCTAGA	1 cut(s)	397
XceI	RCATGY	1 cut(s)	632
XspI	CTAG	3 cut(s)	239, 398, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.