Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00552

Orthogroup ID

OG0008906

Physical Location & Seq

Genomic Coordinates Reverse (-)

5777 .. 8342

Gene Structure 2566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G012480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGATAGATGCGAAGTAGGGGACTTCGAAGCTGGAGGATACAGATGGAGACTAGTGCTCTGCCCGAATGGAAACAAGAAGAGGAATGTGGAAGGCTACATCTCTCTCTACTTGGAAATGGCTGAAGAAAAACCAATCGAGCCCGACCAAATCGTAGCAATTGATTTTAGATTGTTTTTGCTTAATCAGAAGAAGAGCAACTACTTGGTTCTTGAGGATGCCAATAAAAAGGAGAAGAAGTATGTCTTTTATAGGACGATTGTCGGTGGTTCGGCTGGTTTCGATCAGTTTCTTCCTCTTGAAGAATTTACTGACGCCTCCAACGGTTATCTAATTGATGACACTTGTGAATTTGGCGCGGAGGTCTTTGTTTCTAAACAAGTAAGAACAGGAAAAGGAGAGTGTCTAGTGTCTATGATCAAAGATGTCACCAAGTACAAGCATGCTTGGAGCATTTCCAACTTTTCACAGTTGGCTGATGAACGCTATACCTCAAATCCGTTCTTTTTGACAGACCACAAATATTGCGAATGGAATCTACGACTCTATCCCAATGGATGTAATTGGGGAAATGGTAGTGGTCATATTTCTGTTTATGTGGAATTGGCCAATTTAAAATCTCTTCCTCCAGGCTCTAAAGTATTGGCAGAGTTTACCATACAAATCCTAGATCAAATCAATGGGAAGCATCATTCTACCAAAGCTTGTAAACGCTGGTTCGGTACCAGTCCCTCGACCTCGGGTTGGGGTTGCGCTCAATTCATCAGACAGGACTTGTTCAGAAACTCGGAGAAAGGATTGTTAGTGAGCGATTGTTGCATCGTGGAAACAGACATTAAAATCTGTGCGGTAGAACTCACAATTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

289

Amino Acids

32.77

Weight (kDa)

6.02

Isoelectric Point (pI)

27.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	5 - 122	3.3e-23	MATH domain
MATH_2	PF22486	147 - 279	3.9e-28	MATH domain
MATH	PF00917	152 - 281	7.5e-09	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008906)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427011 RchiOBHm_Chr4g0427021 RchiOBHm_Chr4g0437151
rosa_laevigata	RLG00000000551 RLG00000007266 RLG00000007267
rosa_multiflora	Rmu_sc0002268.1_g000004 Rmu_sc0010736.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368890 Rroxscaffold_7G00205110
rosa_rugosa	Rorug04G0215500 Rorug04G0217900
rosa_samantha	Rh4AG271100 Rh4AG274100 Rh4BG277300 Rh4BG279800 Rh4CG282700 Rh4CG292000 Rh4DG274700 Rh4DG274800
rosa_wichuraiana	Rw0G012480 Rw0G012490 Rw4G022810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	722
AccB1I	GGYRCC	1 cut(s)	722
AccII	CGCG	1 cut(s)	359
AciI	CCGC	2 cut(s)	359, 848
AcoI	YGGCCR	1 cut(s)	606
AcsI	RAATTY	2 cut(s)	305, 350
AcuI	CTGAAG	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	2 cut(s)	437, 724
AfiI	CCNNNNNNNGG	1 cut(s)	744
AgsI	TTSAA	1 cut(s)	302
AhlI	ACTAGT	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	628
AjuI	GAANNNNNNNTTGG	1 cut(s)	846
AluBI	AGCT	2 cut(s)	32, 704
AluI	AGCT	2 cut(s)	32, 704
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	43
Ama87I	CYCGRG	1 cut(s)	739
AoxI	GGCC	1 cut(s)	606
ApoI	RAATTY	2 cut(s)	305, 350
Asp718I	GGTACC	1 cut(s)	722
AspLEI	GCGC	2 cut(s)	359, 755
AsuHPI	GGTGA	1 cut(s)	421
AsuII	TTCGAA	1 cut(s)	27
AvaI	CYCGRG	1 cut(s)	739
BalI	TGGCCA	1 cut(s)	608
BanI	GGYRCC	1 cut(s)	722
BanII	GRGCYC	1 cut(s)	144
BarI	GAAGNNNNNNTAC	2 cut(s)	185, 217
Bbv12I	GWGCWC	1 cut(s)	60
BccI	CCATC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	630
BciVI	GTATCC	1 cut(s)	32
BclI	TGATCA	1 cut(s)	417
BcoDI	GTCTC	1 cut(s)	43
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	3 cut(s)	53, 407, 668
BfuI	GTATCC	1 cut(s)	32
Bme1390I	CCNGG	1 cut(s)	630
BmeT110I	CYCGRG	1 cut(s)	739
BmiI	GGNNCC	1 cut(s)	724
BmrFI	CCNGG	1 cut(s)	630
BmsI	GCATC	3 cut(s)	208, 697, 828
BoxI	GACNNNNGTC	1 cut(s)	260
BpmI	CTGGAG	2 cut(s)	54, 612
Bpu14I	TTCGAA	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	738
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	1 cut(s)	744
Bse1I	ACTGG	1 cut(s)	726
BseBI	CCWGG	1 cut(s)	630
BseDI	CCNNGG	1 cut(s)	738
BseGI	GGATG	2 cut(s)	223, 563
BseLI	CCNNNNNNNGG	1 cut(s)	744
BseNI	ACTGG	1 cut(s)	726
Bsh1236I	CGCG	1 cut(s)	359
BshFI	GGCC	1 cut(s)	608
BshNI	GGYRCC	1 cut(s)	722
BsiHKAI	GWGCWC	1 cut(s)	60
BsiHKCI	CYCGRG	1 cut(s)	739
BslFI	GGGAC	2 cut(s)	35, 714
BslI	CCNNNNNNNGG	1 cut(s)	744
BsmAI	GTCTC	1 cut(s)	43
BsmFI	GGGAC	2 cut(s)	35, 714
BsnI	GGCC	1 cut(s)	608
BsoBI	CYCGRG	1 cut(s)	739
Bsp119I	TTCGAA	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	60, 144
Bsp143I	GATC	3 cut(s)	283, 417, 670
BspACI	CCGC	2 cut(s)	359, 848
BspANI	GGCC	1 cut(s)	608
BspFNI	CGCG	1 cut(s)	359
BspLI	GGNNCC	1 cut(s)	724
BspQI	GCTCTTC	1 cut(s)	188
BspT104I	TTCGAA	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	722
BsrI	ACTGG	1 cut(s)	726
BssECI	CCNNGG	1 cut(s)	738
BssMI	GATC	3 cut(s)	283, 417, 670
BssNI	GRCGYC	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	2 cut(s)	326, 471
Bst6I	CTCTTC	3 cut(s)	74, 188, 627
BstACI	GRCGYC	1 cut(s)	315
BstBI	TTCGAA	1 cut(s)	27
BstC8I	GCNNGC	1 cut(s)	444
BstF5I	GGATG	2 cut(s)	223, 563
BstFNI	CGCG	1 cut(s)	359
BstHHI	GCGC	2 cut(s)	359, 755
BstKTI	GATC	3 cut(s)	286, 420, 673
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	3 cut(s)	283, 417, 670
BstMWI	GCNNNNNNNGC	1 cut(s)	816
BstNI	CCWGG	1 cut(s)	630
BstNSI	RCATGY	1 cut(s)	446
BstPAI	GACNNNNGTC	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	628
BstUI	CGCG	1 cut(s)	359
BsuI	GTATCC	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	608
BtsCI	GGATG	2 cut(s)	223, 563
Cac8I	GCNNGC	1 cut(s)	444
CfoI	GCGC	2 cut(s)	359, 755
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	436, 723
CspCI	CAANNNNNGTGG	2 cut(s)	506, 541
CviAII	CATG	1 cut(s)	443
CviJI	RGCY	9 cut(s)	32, 96, 122, 142, 275, 476, 608, 633, 704
CviKI_1	RGCY	9 cut(s)	32, 96, 122, 142, 275, 476, 608, 633, 704
CviQI	GTAC	2 cut(s)	436, 723
DpnI	GATC	3 cut(s)	285, 419, 672
DpnII	GATC	3 cut(s)	283, 417, 670
DraI	TTTAAA	1 cut(s)	615
EaeI	YGGCCR	1 cut(s)	606
Eam1104I	CTCTTC	3 cut(s)	74, 188, 627
EarI	CTCTTC	3 cut(s)	74, 188, 627
Eco24I	GRGCYC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	739
EcoRII	CCWGG	1 cut(s)	628
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	1 cut(s)	446
FaiI	YATR	8 cut(s)	243, 252, 416, 444, 489, 585, 597, 659
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	2 cut(s)	35, 714
FatI	CATG	1 cut(s)	442
FbaI	TGATCA	1 cut(s)	417
FokI	GGATG	2 cut(s)	230, 570
FriOI	GRGCYC	1 cut(s)	144
FspBI	CTAG	3 cut(s)	53, 407, 668
GlaI	GCGC	2 cut(s)	358, 754
GsuI	CTGGAG	2 cut(s)	54, 612
HaeIII	GGCC	1 cut(s)	608
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	2 cut(s)	359, 755
Hin1I	GRCGYC	1 cut(s)	315
Hin1II	CATG	1 cut(s)	446
Hin6I	GCGC	2 cut(s)	357, 753
HinP1I	GCGC	2 cut(s)	357, 753
HindIII	AAGCTT	1 cut(s)	702
HinfI	GANTC	2 cut(s)	535, 543
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	2 cut(s)	654, 710
Hpy188I	TCNGA	4 cut(s)	189, 767, 782, 790
Hpy188III	TCNNGA	2 cut(s)	212, 299
Hpy8I	GTNNAC	2 cut(s)	654, 710
HpyAV	CCTTC	1 cut(s)	86
HpyCH4III	ACNGT	2 cut(s)	326, 471
HpyCH4V	TGCA	1 cut(s)	819
HpyF10VI	GCNNNNNNNGC	1 cut(s)	816
Hsp92I	GRCGYC	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	446
HspAI	GCGC	2 cut(s)	357, 753
KpnI	GGTACC	1 cut(s)	726
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	3 cut(s)	283, 417, 670
LguI	GCTCTTC	1 cut(s)	188
LmnI	GCTCC	1 cut(s)	450
LpnPI	CCDG	8 cut(s)	18, 261, 375, 615, 642, 700, 739, 755
LweI	GCATC	3 cut(s)	208, 697, 828
MaeI	CTAG	3 cut(s)	53, 407, 668
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	3 cut(s)	285, 419, 672
MboI	GATC	3 cut(s)	283, 417, 670
MboII	GAAGA	8 cut(s)	91, 137, 202, 205, 247, 284, 314, 614
MfeI	CAATTG	2 cut(s)	159, 861
MhlI	GDGCHC	2 cut(s)	60, 144
MlsI	TGGCCA	1 cut(s)	608
MluCI	AATT	9 cut(s)	159, 305, 333, 350, 562, 602, 610, 758, 861
MluNI	TGGCCA	1 cut(s)	608
MlyI	GAGTC	1 cut(s)	537
MmeI	TCCRAC	2 cut(s)	345, 483
Mox20I	TGGCCA	1 cut(s)	608
MscI	TGGCCA	1 cut(s)	608
MseI	TTAA	4 cut(s)	183, 614, 837, 868
Msp20I	TGGCCA	1 cut(s)	608
MspR9I	CCNGG	1 cut(s)	630
MunI	CAATTG	2 cut(s)	159, 861
MvaI	CCWGG	1 cut(s)	630
MvnI	CGCG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	816
NdeII	GATC	3 cut(s)	283, 417, 670
NlaIII	CATG	1 cut(s)	446
NlaIV	GGNNCC	1 cut(s)	724
NmuCI	GTSAC	1 cut(s)	427
NspI	RCATGY	1 cut(s)	446
NspV	TTCGAA	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	446
PciSI	GCTCTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	535
PleI	GAGTC	1 cut(s)	537
PpsI	GAGTC	1 cut(s)	537
PshAI	GACNNNNGTC	1 cut(s)	260
Psp6I	CCWGG	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	1 cut(s)	724
RsaI	GTAC	2 cut(s)	437, 724
RsaNI	GTAC	2 cut(s)	436, 723
SapI	GCTCTTC	1 cut(s)	188
SaqAI	TTAA	4 cut(s)	183, 614, 837, 868
Sau3AI	GATC	3 cut(s)	283, 417, 670
SchI	GAGTC	1 cut(s)	537
ScrFI	CCNGG	1 cut(s)	630
SduI	GDGCHC	2 cut(s)	60, 144
SetI	ASST	5 cut(s)	34, 366, 494, 706, 740
SfaNI	GCATC	3 cut(s)	208, 697, 828
SfuI	TTCGAA	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SpeI	ACTAGT	1 cut(s)	52
SphI	GCATGC	1 cut(s)	446
Sse9I	AATT	9 cut(s)	159, 305, 333, 350, 562, 602, 610, 758, 861
SsiI	CCGC	2 cut(s)	359, 848
SspI	AATATT	1 cut(s)	524
SspMI	CTAG	3 cut(s)	53, 407, 668
StyD4I	CCNGG	1 cut(s)	628
TaaI	ACNGT	2 cut(s)	326, 471
TaqI	TCGA	4 cut(s)	27, 138, 282, 734
TasI	AATT	9 cut(s)	159, 305, 333, 350, 562, 602, 610, 758, 861
TatI	WGTACW	1 cut(s)	435
TfiI	GAWTC	1 cut(s)	535
Tru1I	TTAA	4 cut(s)	183, 614, 837, 868
Tru9I	TTAA	4 cut(s)	183, 614, 837, 868
TseFI	GTSAC	1 cut(s)	427
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	495, 751
TspGWI	ACGGA	1 cut(s)	489
XapI	RAATTY	2 cut(s)	305, 350
XceI	RCATGY	1 cut(s)	446
XspI	CTAG	3 cut(s)	53, 407, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.