Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008906

Physical Location & Seq

Genomic Coordinates Forward (+)

1946971 .. 1947418

Gene Structure 448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000551

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGCATATCGCCATGGCTAGCCTTGAAATTCACCGTCATAATGACTCTGTCTTGAGGTCAATTACGAGTAAACCTCCAAGACACAAGATAAAAATAGTTTCGTTTTCAAGGCTAACAGTGTTGGATAGATACGAATCAACGGAGTTTGAGGCAGGAGAATACAGGTGGAAACTAGTGCTCTTCCCAAATGGAAACAAAGAGCGCAATGTGGATAACCACATCCCTCTATACTTGGAGATGTGCGGAGAAAAAGCTATAAGAGCCGGGTACATAATCACGATCGATGTCAACAAAAAGGAGAAGTATTGTATCTATAAAACCATTGTTGGTGGTTTGGCTGGTTTTGATCAATTCATCCCTCTAGAAGATTTTCGTGATGCCTCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

130

Amino Acids

14.94

Weight (kDa)

8.53

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	28 - 127	1.1e-12	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008906)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427011 RchiOBHm_Chr4g0427021 RchiOBHm_Chr4g0437151
rosa_laevigata	RLG00000000551 RLG00000007266 RLG00000007267
rosa_multiflora	Rmu_sc0002268.1_g000004 Rmu_sc0010736.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368890 Rroxscaffold_7G00205110
rosa_rugosa	Rorug04G0215500 Rorug04G0217900
rosa_samantha	Rh4AG271100 Rh4AG274100 Rh4BG277300 Rh4BG279800 Rh4CG282700 Rh4CG292000 Rh4DG274700 Rh4DG274800
rosa_wichuraiana	Rw0G012480 Rw0G012490 Rw4G022810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	27
AfaI	GTAC	1 cut(s)	269
AgsI	TTSAA	2 cut(s)	26, 108
AhlI	ACTAGT	1 cut(s)	172
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Alw21I	GWGCWC	1 cut(s)	180
ApoI	RAATTY	1 cut(s)	27
Asp700I	GAANNNNTTC	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	204
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	23
AsuNHI	GCTAGC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	180
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	265
BcuI	ACTAGT	1 cut(s)	172
BfaI	CTAG	3 cut(s)	18, 173, 362
Bme1390I	CCNGG	1 cut(s)	265
BmrFI	CCNGG	1 cut(s)	265
BmsI	GCATC	1 cut(s)	367
BmtI	GCTAGC	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
BpuEI	CTTGAG	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	265
Bsa29I	ATCGAT	1 cut(s)	282
BsaBI	GATNNNNATC	1 cut(s)	133
BsaJI	CCNNGG	1 cut(s)	12
Bse3DI	GCAATG	1 cut(s)	211
Bse8I	GATNNNNATC	1 cut(s)	133
BseCI	ATCGAT	1 cut(s)	282
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	2 cut(s)	219, 354
BseJI	GATNNNNATC	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	211
Bsh1285I	CGRYCG	1 cut(s)	282
BshVI	ATCGAT	1 cut(s)	282
BsiEI	CGRYCG	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	279, 346
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	1 cut(s)	243
BspDI	ATCGAT	1 cut(s)	282
BspOI	GCTAGC	1 cut(s)	21
BspQI	GCTCTTC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	2 cut(s)	279, 346
BssT1I	CCWWGG	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	35, 118
Bst6I	CTCTTC	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	19
BstDSI	CCRYGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	219, 354
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	2 cut(s)	282, 349
BstMBI	GATC	2 cut(s)	279, 346
BstMCI	CGRYCG	1 cut(s)	282
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	263
Bsu15I	ATCGAT	1 cut(s)	282
BsuTUI	ATCGAT	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	219, 354
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	1 cut(s)	204
ClaI	ATCGAT	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	1 cut(s)	13
CviJI	RGCY	6 cut(s)	17, 21, 112, 254, 263, 338
CviKI_1	RGCY	6 cut(s)	17, 21, 112, 254, 263, 338
CviQI	GTAC	1 cut(s)	268
DpnI	GATC	2 cut(s)	281, 348
DpnII	GATC	2 cut(s)	279, 346
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	12
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	1 cut(s)	16
FaiI	YATR	7 cut(s)	6, 14, 39, 229, 257, 272, 315
FatI	CATG	1 cut(s)	12
FbaI	TGATCA	1 cut(s)	346
FokI	GGATG	2 cut(s)	206, 341
FspBI	CTAG	3 cut(s)	18, 173, 362
GlaI	GCGC	1 cut(s)	203
HapII	CCGG	1 cut(s)	264
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	16
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	2 cut(s)	44, 134
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	2 cut(s)	71, 289
Hpy188III	TCNNGA	4 cut(s)	52, 277, 362, 374
Hpy8I	GTNNAC	2 cut(s)	71, 289
HpyCH4III	ACNGT	2 cut(s)	35, 118
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	16
HspAI	GCGC	1 cut(s)	202
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	279, 346
LguI	GCTCTTC	1 cut(s)	185
LpnPI	CCDG	4 cut(s)	138, 148, 277, 324
LweI	GCATC	1 cut(s)	367
MaeI	CTAG	3 cut(s)	18, 173, 362
MalI	GATC	2 cut(s)	281, 348
MboI	GATC	2 cut(s)	279, 346
MboII	GAAGA	2 cut(s)	172, 377
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	4 cut(s)	27, 60, 350, 385
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	5 cut(s)	48, 84, 142, 234, 369
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	1 cut(s)	388
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	265
MwoI	GCNNNNNNNGC	1 cut(s)	260
NciI	CCSGG	1 cut(s)	265
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	2 cut(s)	279, 346
NheI	GCTAGC	1 cut(s)	17
NlaIII	CATG	1 cut(s)	16
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	134
PflFI	GACNNNGTC	1 cut(s)	47
Ple19I	CGATCG	1 cut(s)	282
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PsyI	GACNNNGTC	1 cut(s)	47
PvuI	CGATCG	1 cut(s)	282
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	388
Sau3AI	GATC	2 cut(s)	279, 346
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	1 cut(s)	265
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	4 cut(s)	59, 76, 167, 256
SfaNI	GCATC	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
SpeI	ACTAGT	1 cut(s)	172
Sse9I	AATT	4 cut(s)	27, 60, 350, 385
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	3 cut(s)	18, 173, 362
StyD4I	CCNGG	1 cut(s)	263
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	35, 118
TaqI	TCGA	1 cut(s)	282
TasI	AATT	4 cut(s)	27, 60, 350, 385
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	388
Tru9I	TTAA	1 cut(s)	388
TscAI	CASTG	1 cut(s)	123
TspDTI	ATGAA	1 cut(s)	343
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	123
Tth111I	GACNNNGTC	1 cut(s)	47
XapI	RAATTY	1 cut(s)	27
XbaI	TCTAGA	1 cut(s)	361
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	3 cut(s)	18, 173, 362
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.