Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008906

Physical Location & Seq

Genomic Coordinates Reverse (-)

15184871 .. 15188921

Gene Structure 4051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007267

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAGGTCTGGACTTGTGGAGCAAGGCAGCAGGCCGAGCAGCTAGAGCGTAGAGGCCTGGAGCAGTGCAGCTTAAGTTATTTCTTAGTTGGACAGTTTGACTATTTGTGCAAAATTGCAAATTGTGTTTATGTTTCTGTTGCGGTTGTACCATTTTGTTTTGGCGGGTCGAAGCCAATAGAAAAGGCTACTACTCTCCAGCCTCTGGACTTACATGATGACTTTAATGCAGGCCTGGTTTTGAGATCAACATCAGATGAACGACCGATTCACCACACCGTAAAAATACGATCCTTTTCTTTGCTAAGAAATTTAATGGATAGATGCGAAGTAGGGGACTTTGAAGATGGAGGATATAGATGGAAACTAGTGCTCTGCCCGAATGGAAACAAGAAGAGGAATGTGGAAGGCCACATCTCTCTCTACTTGGAAATGGCTGAAGAAAAACCAATTGAAATCGTAGCAATTGATTTTAGATTGTTTTTGCTTAATCAGAAGAAGAGCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

170

Amino Acids

19.33

Weight (kDa)

6.42

Isoelectric Point (pI)

43.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	91 - 167	2e-14	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0008906)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427011 RchiOBHm_Chr4g0427021 RchiOBHm_Chr4g0437151
rosa_laevigata	RLG00000000551 RLG00000007266 RLG00000007267
rosa_multiflora	Rmu_sc0002268.1_g000004 Rmu_sc0010736.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368890 Rroxscaffold_7G00205110
rosa_rugosa	Rorug04G0215500 Rorug04G0217900
rosa_samantha	Rh4AG271100 Rh4AG274100 Rh4BG277300 Rh4BG279800 Rh4CG282700 Rh4CG292000 Rh4DG274700 Rh4DG274800
rosa_wichuraiana	Rw0G012480 Rw0G012490 Rw4G022810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	205
AciI	CCGC	2 cut(s)	143, 165
AclWI	GGATC	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	205
AflII	CTTAAG	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	344, 455
AhlI	ACTAGT	1 cut(s)	367
AjnI	CCWGG	2 cut(s)	57, 234
AluBI	AGCT	2 cut(s)	43, 72
AluI	AGCT	2 cut(s)	43, 72
Alw21I	GWGCWC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	285
AlwNI	CAGNNNCTG	1 cut(s)	205
AoxI	GGCC	4 cut(s)	33, 55, 232, 409
ApeKI	GCWGC	3 cut(s)	28, 40, 69
ApoI	RAATTY	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	3 cut(s)	40, 52, 81
BccI	CCATC	2 cut(s)	341, 354
BciT130I	CCWGG	2 cut(s)	59, 236
BcuI	ACTAGT	1 cut(s)	367
BfaI	CTAG	3 cut(s)	44, 368, 508
BfrI	CTTAAG	1 cut(s)	73
BisI	GCNGC	3 cut(s)	29, 41, 70
BlsI	GCNGC	3 cut(s)	30, 42, 71
Bme1390I	CCNGG	2 cut(s)	59, 236
BmrFI	CCNGG	2 cut(s)	59, 236
BmsI	GCATC	1 cut(s)	314
BpmI	CTGGAG	2 cut(s)	80, 182
BsaBI	GATNNNNATC	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse8I	GATNNNNATC	1 cut(s)	250
BseBI	CCWGG	2 cut(s)	59, 236
BseJI	GATNNNNATC	1 cut(s)	250
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseXI	GCAGC	3 cut(s)	40, 52, 81
BsgI	GTGCAG	1 cut(s)	88
Bsh1285I	CGRYCG	1 cut(s)	266
BshFI	GGCC	4 cut(s)	35, 57, 234, 411
BsiEI	CGRYCG	1 cut(s)	266
BsiHKAI	GWGCWC	1 cut(s)	375
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	4 cut(s)	35, 57, 234, 411
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	2 cut(s)	245, 290
BspACI	CCGC	2 cut(s)	143, 165
BspANI	GGCC	4 cut(s)	35, 57, 234, 411
BspPI	GGATC	1 cut(s)	285
BspQI	GCTCTTC	1 cut(s)	494
BspTI	CTTAAG	1 cut(s)	73
BssMI	GATC	2 cut(s)	245, 290
Bst2UI	CCWGG	2 cut(s)	59, 236
Bst4CI	ACNGT	2 cut(s)	96, 280
Bst6I	CTCTTC	2 cut(s)	389, 494
BstAFI	CTTAAG	1 cut(s)	73
BstC8I	GCNNGC	2 cut(s)	33, 232
BstDEI	CTNAG	2 cut(s)	85, 305
BstKTI	GATC	2 cut(s)	248, 293
BstMBI	GATC	2 cut(s)	245, 290
BstMCI	CGRYCG	1 cut(s)	266
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 46
BstNI	CCWGG	2 cut(s)	59, 236
BstSCI	CCNGG	2 cut(s)	57, 234
BstV1I	GCAGC	3 cut(s)	40, 52, 81
BsuRI	GGCC	4 cut(s)	35, 57, 234, 411
BtsI	GCAGTG	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	71
Cac8I	GCNNGC	2 cut(s)	33, 232
CaiI	CAGNNNCTG	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	149
CviAII	CATG	1 cut(s)	215
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	2 cut(s)	85, 305
DpnI	GATC	2 cut(s)	247, 292
DpnII	GATC	2 cut(s)	245, 290
Eam1104I	CTCTTC	2 cut(s)	389, 494
EarI	CTCTTC	2 cut(s)	389, 494
Eco147I	AGGCCT	2 cut(s)	57, 234
Eco57I	CTGAAG	1 cut(s)	459
EcoRII	CCWGG	2 cut(s)	57, 234
FaeI	CATG	1 cut(s)	218
FaiI	YATR	3 cut(s)	132, 216, 357
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	1 cut(s)	214
FauI	CCCGC	1 cut(s)	158
Fnu4HI	GCNGC	3 cut(s)	29, 41, 70
Fsp4HI	GCNGC	3 cut(s)	29, 41, 70
FspBI	CTAG	3 cut(s)	44, 368, 508
GluI	GCNGC	3 cut(s)	29, 41, 70
GsuI	CTGGAG	2 cut(s)	80, 182
HaeIII	GGCC	4 cut(s)	35, 57, 234, 411
Hin1II	CATG	1 cut(s)	218
HinfI	GANTC	1 cut(s)	268
HphI	GGTGA	1 cut(s)	263
Hpy188I	TCNGA	2 cut(s)	256, 495
Hpy188III	TCNNGA	2 cut(s)	10, 206
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	2 cut(s)	96, 280
HpyCH4V	TGCA	4 cut(s)	69, 111, 119, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 46
HpyF3I	CTNAG	2 cut(s)	85, 305
Hsp92II	CATG	1 cut(s)	218
Kzo9I	GATC	2 cut(s)	245, 290
LguI	GCTCTTC	1 cut(s)	494
LmnI	GCTCC	2 cut(s)	20, 61
LpnPI	CCDG	8 cut(s)	17, 44, 71, 191, 212, 216, 221, 248
Lsp1109I	GCAGC	3 cut(s)	40, 52, 81
LweI	GCATC	1 cut(s)	314
MaeI	CTAG	3 cut(s)	44, 368, 508
MalI	GATC	2 cut(s)	247, 292
MboI	GATC	2 cut(s)	245, 290
MboII	GAAGA	4 cut(s)	356, 406, 452, 508
MfeI	CAATTG	2 cut(s)	450, 465
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	5 cut(s)	114, 121, 310, 450, 465
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	4 cut(s)	47, 213, 344, 390
MseI	TTAA	4 cut(s)	74, 225, 314, 489
MspCI	CTTAAG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	59, 236
MunI	CAATTG	2 cut(s)	450, 465
MvaI	CCWGG	2 cut(s)	59, 236
MwoI	GCNNNNNNNGC	2 cut(s)	37, 46
NdeII	GATC	2 cut(s)	245, 290
NlaIII	CATG	1 cut(s)	218
NmeAIII	GCCGAG	1 cut(s)	61
PceI	AGGCCT	2 cut(s)	57, 234
PciSI	GCTCTTC	1 cut(s)	494
PfeI	GAWTC	1 cut(s)	268
PflMI	CCANNNNNTGG	1 cut(s)	205
PkrI	GCNGC	3 cut(s)	30, 42, 71
Psp6I	CCWGG	2 cut(s)	57, 234
PspGI	CCWGG	2 cut(s)	57, 234
PstNI	CAGNNNCTG	1 cut(s)	205
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SapI	GCTCTTC	1 cut(s)	494
SaqAI	TTAA	4 cut(s)	74, 225, 314, 489
SatI	GCNGC	3 cut(s)	29, 41, 70
Sau3AI	GATC	2 cut(s)	245, 290
ScrFI	CCNGG	2 cut(s)	59, 236
SduI	GDGCHC	1 cut(s)	375
SetI	ASST	3 cut(s)	9, 45, 74
SfaNI	GCATC	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
SpeI	ACTAGT	1 cut(s)	367
Sse9I	AATT	5 cut(s)	114, 121, 310, 450, 465
SseBI	AGGCCT	2 cut(s)	57, 234
SsiI	CCGC	2 cut(s)	143, 165
SspMI	CTAG	3 cut(s)	44, 368, 508
StuI	AGGCCT	2 cut(s)	57, 234
StyD4I	CCNGG	2 cut(s)	57, 234
TaaI	ACNGT	2 cut(s)	96, 280
TaqI	TCGA	1 cut(s)	170
TaqII	GACCGA	1 cut(s)	280
TasI	AATT	5 cut(s)	114, 121, 310, 450, 465
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	4 cut(s)	74, 225, 314, 489
Tru9I	TTAA	4 cut(s)	74, 225, 314, 489
TscAI	CASTG	1 cut(s)	71
TseI	GCWGC	3 cut(s)	28, 40, 69
TspDTI	ATGAA	1 cut(s)	273
TspRI	CASTG	1 cut(s)	71
Van91I	CCANNNNNTGG	1 cut(s)	205
Vha464I	CTTAAG	1 cut(s)	73
XapI	RAATTY	1 cut(s)	310
XspI	CTAG	3 cut(s)	44, 368, 508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.