Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008906

Physical Location & Seq

Genomic Coordinates Reverse (-)

37668660 .. 37671024

Gene Structure 2365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0217900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAATCCATCAGCGGAGGACGTGTGAGTAGTAGCACTATCAACAATACACCTTCCACCGCAGATCAAAAGGTGGCTGTTGTTGACCCCATATCTCCTGATTTCCGAAAAGCCATCTCGTCGGTTCTTTCGCGGTGGAATGGCCTCGAAATGGCTGTCCAGAACCAGTGGGGTGGCCGAGACTCCACCCACAAAGCTCAGCAGCTCTCTGCCGATATTCTCTCTTGGTTCTCTCAATCCAAAGCAGCACCACGTTACGTGGAAGATCTCGAAAATTTGCTCCATGAACGTATGATTCTCTCCTTCAACACAGACATTGAAGATGGGAGCATTGAGGAGGTGGCTGAGCAATTGATGATTGTACATGAGGAATACTTGCATGGAAACCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

130

Amino Acids

14.5

Weight (kDa)

4.84

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WGG	PF10273	35 - 116	3.4e-25	Pre-rRNA-processing protein TSR2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008906)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0427011 RchiOBHm_Chr4g0427021 RchiOBHm_Chr4g0437151
rosa_laevigata	RLG00000000551 RLG00000007266 RLG00000007267
rosa_multiflora	Rmu_sc0002268.1_g000004 Rmu_sc0010736.1_g000001
rosa_roxburghii	Rroxscaffold_5G00368890 Rroxscaffold_7G00205110
rosa_rugosa	Rorug04G0215500 Rorug04G0217900
rosa_samantha	Rh4AG271100 Rh4AG274100 Rh4BG277300 Rh4BG279800 Rh4CG282700 Rh4CG292000 Rh4DG274700 Rh4DG274800
rosa_wichuraiana	Rw0G012480 Rw0G012490 Rw4G022810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	133
AciI	CCGC	3 cut(s)	15, 60, 133
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	274
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	1 cut(s)	151
AflIII	ACRYGT	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	307, 320
AjiI	CACGTC	1 cut(s)	23
AluBI	AGCT	2 cut(s)	197, 205
AluI	AGCT	2 cut(s)	197, 205
Alw26I	GTCTC	1 cut(s)	174
AoxI	GGCC	2 cut(s)	142, 175
ApeKI	GCWGC	2 cut(s)	202, 245
ApoI	RAATTY	1 cut(s)	274
ArsI	GACNNNNNNTTYG	2 cut(s)	141, 173
BbvI	GCAGC	2 cut(s)	214, 257
BccI	CCATC	3 cut(s)	17, 122, 317
BcoDI	GTCTC	1 cut(s)	174
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	2 cut(s)	203, 246
BlpI	GCTNAGC	2 cut(s)	198, 345
BlsI	GCNGC	2 cut(s)	204, 247
BmgBI	CACGTC	1 cut(s)	23
Bpu1102I	GCTNAGC	2 cut(s)	198, 345
BsaAI	YACGTR	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	166
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	212, 336
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	350
BseXI	GCAGC	2 cut(s)	214, 257
Bsh1236I	CGCG	1 cut(s)	133
BshFI	GGCC	2 cut(s)	144, 177
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	174
BsnI	GGCC	2 cut(s)	144, 177
Bsp1407I	TGTACA	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	64, 265
Bsp1720I	GCTNAGC	2 cut(s)	198, 345
BspACI	CCGC	3 cut(s)	15, 60, 133
BspANI	GGCC	2 cut(s)	144, 177
BspCNI	CTCAG	2 cut(s)	211, 337
BspFNI	CGCG	1 cut(s)	133
BsrGI	TGTACA	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	166
BssMI	GATC	2 cut(s)	64, 265
BstAUI	TGTACA	1 cut(s)	361
BstBAI	YACGTR	1 cut(s)	259
BstDEI	CTNAG	2 cut(s)	198, 345
BstFNI	CGCG	1 cut(s)	133
BstKTI	GATC	2 cut(s)	67, 268
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	64, 265
BstUI	CGCG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	214, 257
BstX2I	RGATCY	1 cut(s)	265
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	2 cut(s)	144, 177
BtrI	CACGTC	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	3 cut(s)	284, 365, 380
CviJI	RGCY	8 cut(s)	77, 113, 144, 155, 177, 197, 205, 344
CviKI_1	RGCY	8 cut(s)	77, 113, 144, 155, 177, 197, 205, 344
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	2 cut(s)	198, 345
DpnI	GATC	2 cut(s)	66, 267
DpnII	GATC	2 cut(s)	64, 265
EaeI	YGGCCR	1 cut(s)	175
FaeI	CATG	3 cut(s)	287, 368, 383
FaiI	YATR	5 cut(s)	92, 285, 293, 366, 381
FatI	CATG	3 cut(s)	283, 364, 379
Fnu4HI	GCNGC	2 cut(s)	203, 246
Fsp4HI	GCNGC	2 cut(s)	203, 246
GluI	GCNGC	2 cut(s)	203, 246
HaeIII	GGCC	2 cut(s)	144, 177
Hin1II	CATG	3 cut(s)	287, 368, 383
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	3 cut(s)	5, 182, 295
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	107
Hpy188III	TCNNGA	3 cut(s)	98, 160, 269
Hpy8I	GTNNAC	1 cut(s)	85
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	2 cut(s)	63, 313
HpyCH4IV	ACGT	4 cut(s)	22, 253, 258, 289
HpyCH4V	TGCA	1 cut(s)	379
HpyF3I	CTNAG	2 cut(s)	198, 345
HpySE526I	ACGT	4 cut(s)	22, 253, 258, 289
Hsp92II	CATG	3 cut(s)	287, 368, 383
Kzo9I	GATC	2 cut(s)	64, 265
LmnI	GCTCC	2 cut(s)	285, 327
LpnPI	CCDG	3 cut(s)	111, 173, 179
Lsp1109I	GCAGC	2 cut(s)	214, 257
MaeII	ACGT	4 cut(s)	22, 253, 258, 289
MaeIII	GTNAC	1 cut(s)	254
MalI	GATC	2 cut(s)	66, 267
MboI	GATC	2 cut(s)	64, 265
MboII	GAAGA	2 cut(s)	275, 332
MfeI	CAATTG	1 cut(s)	350
MflI	RGATCY	1 cut(s)	265
MluCI	AATT	2 cut(s)	274, 350
MlyI	GAGTC	1 cut(s)	176
MnlI	CCTC	5 cut(s)	11, 155, 328, 331, 361
MseI	TTAA	1 cut(s)	391
MspA1I	CMGCKG	1 cut(s)	15
MunI	CAATTG	1 cut(s)	350
MvnI	CGCG	1 cut(s)	133
NdeII	GATC	2 cut(s)	64, 265
NlaIII	CATG	3 cut(s)	287, 368, 383
NmeAIII	GCCGAG	1 cut(s)	203
PfeI	GAWTC	2 cut(s)	5, 295
PkrI	GCNGC	2 cut(s)	204, 247
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Ppu21I	YACGTR	1 cut(s)	259
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	391
SatI	GCNGC	2 cut(s)	203, 246
Sau3AI	GATC	2 cut(s)	64, 265
SchI	GAGTC	1 cut(s)	176
SetI	ASST	9 cut(s)	25, 55, 75, 199, 207, 256, 261, 292, 342
Sse9I	AATT	2 cut(s)	274, 350
SsiI	CCGC	3 cut(s)	15, 60, 133
TaiI	ACGT	4 cut(s)	25, 256, 261, 292
TaqI	TCGA	2 cut(s)	147, 270
TasI	AATT	2 cut(s)	274, 350
TatI	WGTACW	1 cut(s)	361
TfiI	GAWTC	2 cut(s)	5, 295
Tru1I	TTAA	1 cut(s)	391
Tru9I	TTAA	1 cut(s)	391
TscAI	CASTG	1 cut(s)	173
TseI	GCWGC	2 cut(s)	202, 245
TspDTI	ATGAA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	173
XapI	RAATTY	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.