RchiOBHm_Chr3g0452671

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
3268568 .. 3270102
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 264 bp
ATGAGACCTGGAGGACCTGGAGGGCCTGGAGGGCCGCCTGGCCCTGGAGGTCCGCCTGGTTGGGGCCCTGCTCCGCCGCCTGGTCCGCCTGGCCCTATCGGTCCGCCTGGACCTGGACTACCCGGTTTCTTTGGTGGCTTCTGTGATGCTATAGGTGCTTGTTTGAGTTTCTTCTGTTGCTGCTGGTTGCTGGGGGACTGCTTTGGTGGCCCAGGAGGGCCTCCTGGCCCCCCCTTAGGCCCACCTGGACCGCCACGTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

8.07

Weight (kDa)

5.7

Isoelectric Point (pI)

64.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 255
AciI CCGC 7 cut(s) 35, 53, 74, 77, 86, 104, 251
AfiI CCNNNNNNNGG 5 cut(s) 44, 62, 80, 113, 236
AjiI CACGTC 1 cut(s) 257
AoxI GGCC 9 cut(s) 23, 32, 40, 64, 91, 208, 218, 226, 238
ApaI GGGCCC 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 180
AsuC2I CCSGG 1 cut(s) 123
AvaII GGWCC 6 cut(s) 14, 50, 83, 101, 110, 248
AxyI CCTNAGG 1 cut(s) 235
BaeGI GKGCMC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 167
BcnI CCSGG 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 150
BglI GCCNNNNNGGC 1 cut(s) 31
BisI GCNGC 3 cut(s) 35, 77, 181
BlsI GCNGC 3 cut(s) 36, 78, 182
Bme18I GGWCC 6 cut(s) 14, 50, 83, 101, 110, 248
BmgBI CACGTC 1 cut(s) 257
BmiI GGNNCC 3 cut(s) 65, 66, 229
BmsI GCATC 1 cut(s) 136
BpmI CTGGAG 4 cut(s) 30, 39, 48, 66
BpuMI CCSGG 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 43, 211
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 62, 80, 113, 236
Bse21I CCTNAGG 1 cut(s) 235
BseDI CCNNGG 2 cut(s) 43, 211
BseLI CCNNNNNNNGG 5 cut(s) 44, 62, 80, 113, 236
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 1 cut(s) 167
BseYI CCCAGC 1 cut(s) 190
BshFI GGCC 9 cut(s) 25, 34, 42, 66, 93, 210, 220, 228, 240
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 5 cut(s) 44, 62, 80, 113, 236
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 9 cut(s) 25, 34, 42, 66, 93, 210, 220, 228, 240
Bsp120I GGGCCC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 68
BspACI CCGC 7 cut(s) 35, 53, 74, 77, 86, 104, 251
BspANI GGCC 9 cut(s) 25, 34, 42, 66, 93, 210, 220, 228, 240
BspLI GGNNCC 3 cut(s) 65, 66, 229
BssECI CCNNGG 2 cut(s) 43, 211
BstDEI CTNAG 1 cut(s) 235
BstMWI GCNNNNNNNGC 4 cut(s) 31, 85, 155, 207
BstSFI CTRYAG 1 cut(s) 150
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 167
Bsu36I CCTNAGG 1 cut(s) 235
BsuRI GGCC 9 cut(s) 25, 34, 42, 66, 93, 210, 220, 228, 240
BtrI CACGTC 1 cut(s) 257
CpoI CGGWCCG 1 cut(s) 101
CspI CGGWCCG 1 cut(s) 101
DdeI CTNAG 1 cut(s) 235
DrdI GACNNNNNNGTC 1 cut(s) 255
DseDI GACNNNNNNGTC 1 cut(s) 255
EciI GGCGGA 4 cut(s) 42, 63, 75, 93
Eco24I GRGCYC 1 cut(s) 68
Eco47I GGWCC 6 cut(s) 14, 50, 83, 101, 110, 248
Eco81I CCTNAGG 1 cut(s) 235
EcoO109I RGGNCCY 5 cut(s) 14, 23, 64, 65, 218
EcoT38I GRGCYC 1 cut(s) 68
FaiI YATR 2 cut(s) 152, 262
FaqI GGGAC 1 cut(s) 209
Fnu4HI GCNGC 3 cut(s) 35, 77, 181
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 3 cut(s) 35, 77, 181
GluI GCNGC 3 cut(s) 35, 77, 181
GsaI CCCAGC 1 cut(s) 194
GsuI CTGGAG 4 cut(s) 30, 39, 48, 66
HaeIII GGCC 9 cut(s) 25, 34, 42, 66, 93, 210, 220, 228, 240
HapII CCGG 1 cut(s) 123
HpaII CCGG 1 cut(s) 123
HpyCH4IV ACGT 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 85, 155, 207
HpyF3I CTNAG 1 cut(s) 235
HpySE526I ACGT 1 cut(s) 256
LmnI GCTCC 1 cut(s) 76
Lsp1109I GCAGC 1 cut(s) 167
LweI GCATC 1 cut(s) 136
MaeII ACGT 1 cut(s) 256
MboII GAAGA 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 68
MnlI CCTC 6 cut(s) 5, 14, 23, 41, 209, 231
MspI CCGG 1 cut(s) 123
MwoI GCNNNNNNNGC 4 cut(s) 31, 85, 155, 207
NciI CCSGG 1 cut(s) 123
NlaIV GGNNCC 3 cut(s) 65, 66, 229
PkrI GCNGC 3 cut(s) 36, 78, 182
PpuMI RGGWCCY 1 cut(s) 14
Psp5II RGGWCCY 1 cut(s) 14
PspFI CCCAGC 1 cut(s) 190
PspN4I GGNNCC 3 cut(s) 65, 66, 229
PspOMI GGGCCC 1 cut(s) 64
PspPPI RGGWCCY 1 cut(s) 14
Rsr2I CGGWCCG 1 cut(s) 101
RsrII CGGWCCG 1 cut(s) 101
SatI GCNGC 3 cut(s) 35, 77, 181
SduI GDGCHC 1 cut(s) 68
SetI ASST 7 cut(s) 10, 19, 52, 115, 157, 247, 259
SfaNI GCATC 1 cut(s) 136
SfcI CTRYAG 1 cut(s) 150
SfiI GGCCNNNNNGGCC 1 cut(s) 31
SinI GGWCC 6 cut(s) 14, 50, 83, 101, 110, 248
SsiI CCGC 7 cut(s) 35, 53, 74, 77, 86, 104, 251
TaiI ACGT 1 cut(s) 259
TaqII GACCGA 1 cut(s) 89
TauI GCSGC 2 cut(s) 37, 79
TseI GCWGC 1 cut(s) 180
VpaK11BI GGWCC 6 cut(s) 14, 50, 83, 101, 110, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.