RchiOBHm_Chr3g0453121

FRIGIDA-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005538
Physical Location & Seq
Forward (+)
3634399 .. 3638100
3702 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2343 bp
ATGAAAGAGGGGAAACTTGAAGAGAAGGCTAAAGAGTTTGAAATGTTTGCTTCTCAAGTGAAGACTGAGCAGTTGGAAAAAGAAAAGCATTTTGCTTCACTTGAAAAATCGATGGAAGAACGAGGAAAGAACTTGGATGCACTTGAAAAATCGATACAAAAGCGTGAAAGGTATTTGGGTTTAGTTTCCCATGAACTGAAGATGAAAGAGGGGAAACTTGAAGAGAAGGCTAGGGAGTTTGAATTGTTTGCTTCTCAAGTGAAGACTGAGCAGCTGGAAAAAGAAAAGAACTTTGCTTCACTTGAAAAATCGATGGAAGAACGAGAGAAGACCTTGGATACACTTGAAAAATCGATACAAGAGCGCAAAAAGTCTTTGGATTCAGTCTCATATGAACTGAAGATGAAGGAGGGGAAACTTGAAGAGAAGGCTAAAGAGTTTGAAATGTTTGCTTCTCAAGTGAAGACTGAGCAGTTGGAAAGAGAAGAGCATTTTGCTTCACTTGAAAAATCGATGGAAGAACGAGAGAAGACAATGGATGCACTTGAAAAATCGATACAAGAGCGTGAAAAGTCTTTGGATTCAGTCTCATATGAACTGAAGATGAAAGAGGGGAAACTTGAAGAGAAGGCTAAAGAGTTTGAAATGTTTGCTTCTCAAGTGAAGACTGAGCAGTTGGAAAAAGAAAAGCATTTTGCTTCAGTTGAAAAATCGATGGACGAACGAGGAAAGAACTTAGATGCACTTGAAAAATCGATACAAGAGCGTGAAAGGTATTTGGGTTTAGTTTCCCATGAACTGAAGATGAAAGAGGGGAAACTTGAAGAGAAGGCTAATGAGTTTGAATTGTTTGCTTTTCAAGTGAAGACTGAGCAGCTGGAAAAAGAAAAGCACTTTGCTTCACTTGAAAAATCGATGGAAGAACGGGAGAAGACCTTGGATGCACTTGAAAAATCGATACAAGAGCGCGAAAAGTCTTTGGATTCAGTCTCCCATGAACTGAAGATGAAAGAGGTGCAGCTTGAAGAGCAAGCCAAAGAGTTTAAACTGAAGCAAATTGCATTTGCTTCTCAAGTGAAGACTGAGCAGCAGGAAAAAGAAGAGCACTTTGCTTCACTTGAAAAATCGATGGAAGAACGAGAGAAGACCTTGGATGCACTTGAAAAATCGATACAAGAGCGCGAAAAGTCTTTGGATTCAGTCTCCCATGAACTGAAGATGAAAGAGGGGCAGCTTGAAGAGCAAGCCAAAGAGTTTAAACTGAAGCAAATTGCATTTGCTTCTCAAGTGAAGACTGAGAAGTTGGAAAGAGAAGAGCATTTTGCTTCACTTGAAAAATCGATCCAAGAAAGAGGAAAGACTTTGAATTCACTCAAGAAGTCGTTCCAAGAGAGCAAAGAGCATTTGGAGAGACAACTTGAAGAGCAGGGCAGAGAGCTTCAATCAAAGCAAAAATTATTCGATTCTCAGCAAGTGGAAAGAGAAAAGCAACATGATATATTTGAAAAGTCCTTGGGAGAACGCAAAAAGCAGTTCAATGTATTCCAAAAGTCGGTTCAGGAGCAGAAAGAGCATTTGGATTCACTCTCCCATAGACTCCAGATGGAAAATAGGCAACTTGAAAAGGAGGGCAAAGAGCTTGAATTGAAGCTAAAACAACATGAATCTCAAGTGAAGGCTGACCAGTTGGCACTTACACCCACTGCTAATAATATGATTATTCCGTTTATAAGTGATCAACCCAGCATCAGTACAGATGGTAGAAGCTTGCAGTTGTTAATCGCTGAGAATTTAAACAAAGCTGAATTGGTGGGTGGCGAATTATCAGCTCTTTTAGATGCAGATGAGATTTTAAAGCTTCTTGGAATGATTTCTCAGCATAAGCAGACTTTACAGTTATGTCAGACACTTGGTTTTGAAGATAAAATCCCTGATATTATTTGGAATCTCATTGAAAGAAAGCAACTGATTGAGGCTGTTAGATTTATCTGCACCTTCAAGCTAAATGACGAGTTTCCCCCAGTACCACTCTTGATAGAATTTGTGGAGGATGCAAAGAAGTGTTGCAGTGAAATGCTCAGTGAAGTGAAATCACATGATGAAAAGGAAAAGTTTGTGGATGACCGAATAGCTGATCTAAGAGCTGTGGTTCAATGCATTGAAGACCACGGCCTCGAGTCCCAATACCAGTCAATCGACATTTTGATGGATATTCAAGGTCTTCAGAGACTAAAGGAGAATGGAAAATTGGTGCTGTCCCTTCCACCCAGTGTTGAAAAACAAAAGCAGAGAAAAGGGAGGAAACAAAGTTCCAGCACATATCAGCTGCGTAAAAGAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04530 map04530
Pfam Domains
Protein Families
Frigida

Protein Analysis

780

Amino Acids

91.4

Weight (kDa)

5.52

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 610 - 748 4.8e-34 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1730
AccII CGCG 2 cut(s) 969, 1182
AclWI GGATC 1 cut(s) 1336
AcsI RAATTY 3 cut(s) 1366, 1789, 2039
AdeI CACNNNGTG 1 cut(s) 2270
AfaI GTAC 2 cut(s) 1753, 2025
AfiI CCNNNNNNNGG 1 cut(s) 1552
AjuI GAANNNNNNNTTGG 6 cut(s) 1539, 1559, 1571, 1591, 2231, 2263
AloI GAACNNNNNNTCC 2 cut(s) 2293, 2325
Alw21I GWGCWC 1 cut(s) 1107
Alw26I GTCTC 6 cut(s) 391, 592, 994, 1207, 1405, 2221
AlwI GGATC 1 cut(s) 1336
Ama87I CYCGRG 1 cut(s) 2174
AoxI GGCC 1 cut(s) 2170
ApeKI GCWGC 6 cut(s) 271, 874, 1018, 1087, 1231, 2326
ApoI RAATTY 3 cut(s) 1366, 1789, 2039
Asp700I GAANNNNTTC 2 cut(s) 1382, 1870
AspLEI GCGC 3 cut(s) 366, 969, 1182
AvaI CYCGRG 1 cut(s) 2174
Bbv12I GWGCWC 1 cut(s) 1107
BbvI GCAGC 6 cut(s) 283, 886, 1030, 1099, 1243, 2313
BccI CCATC 9 cut(s) 106, 307, 508, 709, 910, 1123, 1597, 1751, 2200
BceAI ACGGC 1 cut(s) 2185
BciVI GTATCC 1 cut(s) 331
BclI TGATCA 1 cut(s) 1735
BcoDI GTCTC 6 cut(s) 391, 592, 994, 1207, 1405, 2221
BfaI CTAG 1 cut(s) 231
BfuI GTATCC 1 cut(s) 331
BisI GCNGC 6 cut(s) 272, 875, 1019, 1088, 1232, 2327
BlsI GCNGC 6 cut(s) 273, 876, 1020, 1089, 1233, 2328
BmeT110I CYCGRG 1 cut(s) 2174
BmrI ACTGGG 2 cut(s) 2015, 2262
BmsI GCATC 8 cut(s) 127, 529, 730, 931, 1144, 1755, 1828, 2041
BmuI ACTGGG 2 cut(s) 2015, 2262
BpmI CTGGAG 1 cut(s) 1583
BpuEI CTTGAG 8 cut(s) 39, 240, 441, 642, 1056, 1269, 1358, 1653
BsaJI CCNNGG 5 cut(s) 333, 936, 1149, 1512, 2167
Bsc4I CCNNNNNNNGG 1 cut(s) 1552
Bse1I ACTGG 4 cut(s) 1684, 2021, 2188, 2268
BseDI CCNNGG 5 cut(s) 333, 936, 1149, 1512, 2167
BseGI GGATG 6 cut(s) 142, 544, 946, 1159, 2056, 2125
BseLI CCNNNNNNNGG 1 cut(s) 1552
BseNI ACTGG 4 cut(s) 1684, 2021, 2188, 2268
BseXI GCAGC 6 cut(s) 283, 886, 1030, 1099, 1243, 2313
BseYI CCCAGC 1 cut(s) 1742
BsgI GTGCAG 2 cut(s) 1037, 1975
Bsh1236I CGCG 2 cut(s) 969, 1182
BshFI GGCC 1 cut(s) 2172
BsiHKAI GWGCWC 1 cut(s) 1107
BsiHKCI CYCGRG 1 cut(s) 2174
BslFI GGGAC 2 cut(s) 2164, 2242
BslI CCNNNNNNNGG 1 cut(s) 1552
BsmAI GTCTC 6 cut(s) 391, 592, 994, 1207, 1405, 2221
BsmFI GGGAC 2 cut(s) 2164, 2242
BsnI GGCC 1 cut(s) 2172
BsoBI CYCGRG 1 cut(s) 2174
Bsp1286I GDGCHC 1 cut(s) 1107
Bsp143I GATC 3 cut(s) 1341, 1735, 2134
BspANI GGCC 1 cut(s) 2172
BspFNI CGCG 2 cut(s) 969, 1182
BspPI GGATC 1 cut(s) 1336
BspQI GCTCTTC 6 cut(s) 480, 1020, 1095, 1233, 1308, 1416
BsrI ACTGG 4 cut(s) 1684, 2021, 2188, 2268
BssECI CCNNGG 5 cut(s) 333, 936, 1149, 1512, 2167
BssMI GATC 3 cut(s) 1341, 1735, 2134
BssT1I CCWWGG 4 cut(s) 333, 936, 1149, 1512
Bst4CI ACNGT 1 cut(s) 1896
BstC8I GCNNGC 3 cut(s) 1032, 1245, 1769
BstDSI CCRYGG 1 cut(s) 2167
BstF5I GGATG 6 cut(s) 142, 544, 946, 1159, 2056, 2125
BstFNI CGCG 2 cut(s) 969, 1182
BstHHI GCGC 3 cut(s) 366, 969, 1182
BstKTI GATC 3 cut(s) 1344, 1738, 2137
BstMAI GTCTC 6 cut(s) 391, 592, 994, 1207, 1405, 2221
BstMBI GATC 3 cut(s) 1341, 1735, 2134
BstMWI GCNNNNNNNGC 3 cut(s) 1027, 1240, 1570
BstUI CGCG 2 cut(s) 969, 1182
BstV1I GCAGC 6 cut(s) 283, 886, 1030, 1099, 1243, 2313
BsuI GTATCC 1 cut(s) 331
BsuRI GGCC 1 cut(s) 2172
BtgI CCRYGG 1 cut(s) 2167
BtsCI GGATG 6 cut(s) 142, 544, 946, 1159, 2056, 2125
BtsI GCAGTG 2 cut(s) 1701, 2074
BtsIMutI CAGTG 4 cut(s) 1701, 2074, 2086, 2275
Cac8I GCNNGC 3 cut(s) 1032, 1245, 1769
CfoI GCGC 3 cut(s) 366, 969, 1182
Csp6I GTAC 2 cut(s) 1752, 2024
CviAII CATG 7 cut(s) 191, 794, 995, 1208, 1493, 1661, 2096
CviQI GTAC 2 cut(s) 1752, 2024
DpnI GATC 3 cut(s) 1343, 1737, 2136
DpnII GATC 3 cut(s) 1341, 1735, 2134
DraI TTTAAA 4 cut(s) 1045, 1258, 1794, 1854
DraIII CACNNNGTG 1 cut(s) 2270
Eco130I CCWWGG 4 cut(s) 333, 936, 1149, 1512
Eco88I CYCGRG 1 cut(s) 2174
EcoRI GAATTC 1 cut(s) 1366
EcoT14I CCWWGG 4 cut(s) 333, 936, 1149, 1512
EcoT22I ATGCAT 1 cut(s) 2159
ErhI CCWWGG 4 cut(s) 333, 936, 1149, 1512
FaeI CATG 7 cut(s) 194, 797, 998, 1211, 1496, 1664, 2099
FaqI GGGAC 2 cut(s) 2164, 2242
FatI CATG 7 cut(s) 190, 793, 994, 1207, 1492, 1660, 2095
FauNDI CATATG 2 cut(s) 391, 592
FbaI TGATCA 1 cut(s) 1735
Fnu4HI GCNGC 6 cut(s) 272, 875, 1019, 1088, 1232, 2327
FokI GGATG 6 cut(s) 149, 551, 953, 1166, 2063, 2132
Fsp4HI GCNGC 6 cut(s) 272, 875, 1019, 1088, 1232, 2327
FspBI CTAG 1 cut(s) 231
GlaI GCGC 3 cut(s) 365, 968, 1181
GluI GCNGC 6 cut(s) 272, 875, 1019, 1088, 1232, 2327
GsaI CCCAGC 1 cut(s) 1746
GsuI CTGGAG 1 cut(s) 1583
HaeIII GGCC 1 cut(s) 2172
HhaI GCGC 3 cut(s) 366, 969, 1182
Hin1II CATG 7 cut(s) 194, 797, 998, 1211, 1496, 1664, 2099
Hin6I GCGC 3 cut(s) 364, 967, 1180
HinP1I GCGC 3 cut(s) 364, 967, 1180
HindIII AAGCTT 2 cut(s) 1765, 1856
Hpy188I TCNGA 2 cut(s) 1905, 2226
Hpy188III TCNNGA 4 cut(s) 1375, 1559, 1600, 2032
HpyAV CCTTC 9 cut(s) 19, 220, 400, 421, 622, 823, 1669, 2005, 2270
HpyCH4III ACNGT 1 cut(s) 1896
HpyF10VI GCNNNNNNNGC 3 cut(s) 1027, 1240, 1570
Hsp92II CATG 7 cut(s) 194, 797, 998, 1211, 1496, 1664, 2099
HspAI GCGC 3 cut(s) 364, 967, 1180
Ksp22I TGATCA 1 cut(s) 1735
Kzo9I GATC 3 cut(s) 1341, 1735, 2134
LguI GCTCTTC 6 cut(s) 480, 1020, 1095, 1233, 1308, 1416
LmnI GCTCC 1 cut(s) 1561
Lsp1109I GCAGC 6 cut(s) 283, 886, 1030, 1099, 1243, 2313
LweI GCATC 8 cut(s) 127, 529, 730, 931, 1144, 1755, 1828, 2041
MaeI CTAG 1 cut(s) 231
MalI GATC 3 cut(s) 1343, 1737, 2136
MboI GATC 3 cut(s) 1341, 1735, 2134
MhlI GDGCHC 1 cut(s) 1107
MlyI GAGTC 2 cut(s) 1590, 2186
MmeI TCCRAC 4 cut(s) 54, 456, 657, 1284
Mph1103I ATGCAT 1 cut(s) 2159
MroXI GAANNNNTTC 2 cut(s) 1382, 1870
MseI TTAA 5 cut(s) 1044, 1257, 1778, 1793, 1853
MslI CAYNNNNRTG 1 cut(s) 2204
MspA1I CMGCKG 3 cut(s) 274, 877, 2326
MssI GTTTAAAC 2 cut(s) 1045, 1258
MvnI CGCG 2 cut(s) 969, 1182
MwoI GCNNNNNNNGC 3 cut(s) 1027, 1240, 1570
NdeI CATATG 2 cut(s) 391, 592
NdeII GATC 3 cut(s) 1341, 1735, 2134
NlaIII CATG 7 cut(s) 194, 797, 998, 1211, 1496, 1664, 2099
NsiI ATGCAT 1 cut(s) 2159
PaeR7I CTCGAG 1 cut(s) 2174
PciSI GCTCTTC 6 cut(s) 480, 1020, 1095, 1233, 1308, 1416
PdmI GAANNNNTTC 2 cut(s) 1382, 1870
PfeI GAWTC 8 cut(s) 380, 581, 983, 1196, 1463, 1580, 1664, 1945
PkrI GCNGC 6 cut(s) 273, 876, 1020, 1089, 1233, 2328
PleI GAGTC 2 cut(s) 1590, 2185
PmeI GTTTAAAC 2 cut(s) 1045, 1258
PpsI GAGTC 2 cut(s) 1590, 2185
PsiI TTATAA 1 cut(s) 1730
PspFI CCCAGC 1 cut(s) 1742
PspXI VCTCGAGB 1 cut(s) 2174
PvuII CAGCTG 3 cut(s) 274, 877, 2326
RsaI GTAC 2 cut(s) 1753, 2025
RsaNI GTAC 2 cut(s) 1752, 2024
RseI CAYNNNNRTG 1 cut(s) 2204
SapI GCTCTTC 6 cut(s) 480, 1020, 1095, 1233, 1308, 1416
SaqAI TTAA 5 cut(s) 1044, 1257, 1778, 1793, 1853
SatI GCNGC 6 cut(s) 272, 875, 1019, 1088, 1232, 2327
Sau3AI GATC 3 cut(s) 1341, 1735, 2134
SchI GAGTC 2 cut(s) 1590, 2186
SduI GDGCHC 1 cut(s) 1107
SfaNI GCATC 8 cut(s) 127, 529, 730, 931, 1144, 1755, 1828, 2041
Sfr274I CTCGAG 1 cut(s) 2174
SlaI CTCGAG 1 cut(s) 2174
SmiMI CAYNNNNRTG 1 cut(s) 2204
SmlI CTYRAG 9 cut(s) 54, 255, 456, 657, 1071, 1284, 1373, 1668, 2174
SmoI CTYRAG 9 cut(s) 54, 255, 456, 657, 1071, 1284, 1373, 1668, 2174
SspMI CTAG 1 cut(s) 231
StyI CCWWGG 4 cut(s) 333, 936, 1149, 1512
TaaI ACNGT 1 cut(s) 1896
TaqII GACCGA 1 cut(s) 2139
TatI WGTACW 1 cut(s) 1751
TfiI GAWTC 8 cut(s) 380, 581, 983, 1196, 1463, 1580, 1664, 1945
Tru1I TTAA 5 cut(s) 1044, 1257, 1778, 1793, 1853
Tru9I TTAA 5 cut(s) 1044, 1257, 1778, 1793, 1853
TscAI CASTG 4 cut(s) 1708, 2074, 2086, 2275
TseI GCWGC 6 cut(s) 271, 874, 1018, 1087, 1231, 2326
TspGWI ACGGA 1 cut(s) 1713
TspRI CASTG 4 cut(s) 1708, 2074, 2086, 2275
XapI RAATTY 3 cut(s) 1366, 1789, 2039
XhoI CTCGAG 1 cut(s) 2174
XmnI GAANNNNTTC 2 cut(s) 1382, 1870
XspI CTAG 1 cut(s) 231
Zsp2I ATGCAT 1 cut(s) 2159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.