RchiOBHm_Chr3g0490591

Nuclear fragile X mental retardation-interacting protein 1 (NUFIP1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005893
Physical Location & Seq
Forward (+)
37264789 .. 37272207
7419 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1695 bp
ATGTTACCTAACTATAATTCCTTTCACCAAAATTCCGGCCAAGCTCACCCGGCCGGCGGTAATGGTGGTAGCTCTGCTCCATCTCCTCAACAGCAGGGTATGCCATTTAATCCATCACTTGCAAATTCATGTAATATGTTGCCACCTTCGATGGGACCTCAGCCTGGTTTCATGAATTTATCTAACAATCTTCTTCCGATGCAAAATAACCATATGCGTGTGCCCATGTCGCAATTTGGTTCCCTTGGTCCCATATCTCAACCAGGTTATCCTAGTGTTGGATTTTGTGGTCCACAGAATAATGCACTCAATATGAACTTGGCTGCTTCCTATCCATTTAACGGGCAGTTCTGCAATATGGGGCAGAATCTCAATCAAGTAAATCAAAATATGGGTTTTCTACCTGGTCAATTGTTTGGAAATAATCTGTTGAATTTACAGCAGATGAATCAAAATATTGGGCCATATGGGCAATTCTGTCCGCCAAATCTGTTGAATAGGAATCAGGTTGTGCCAATGCAAATGCAAATGCAAAGCCCTTGCCAAGGTGGTCCTAATTTTGCATTTGGGGGATCAAATCAAGCACCTCAGGCTGCAGTTCTGCAAAATCCTGCTTTTTTTGCAACTCCTAATTCTGGTAATGTGCACTCTCCAAATCAGGCCGGACAACAAATCAACCAGAATCAGCAAAACAACGTCTTCCGAGGGACACAGGGAAATCATATAAAAGCTGGTGGCGTTTACAATTCGAATTCTGACAGAAAAACTTCGCCAAGCAAAAATTTTATAAAGCATCCAAAACGAGGGTTGCAACCGCAAGGGGGATTTCAGAAGTCTCAGTTTCATCAAATCAAAAATGCAAAGGGAAAGTTTGCTTTTGCCAACAGGCAAAACAGAAAAGGGCTAAGCAATGAGAAGGAAGGAAAATCTGCTCTTCCCGACTCTATGAATCAAGGCAGGGAAAGGAAAAGATCTCTTTCTTTGTCCTATACGGAACAAGAAGTTCAACTGTGGCGTGAAGGACGTAGGAAGAACTACCCATCAAACACCAACATAGAGAAGAAGCTAAGTGAAAAGATGATAGACTCGGAGGCCATTGAGAGAGAGGCCAAAGCACGAAGGGAGCAACTCAAGGAGATTCTTACAAAGCAGGCTGAGATGGGAGTTGAAGTCGCTGAGATACCATCTCACTACCTCTCAGATTCAGCAAAACAAGGGAATGGAAGAGAGGAGAATAAGTCATGGACTAACAATCGGAGATCACAAAACAAGTTCGTTAAGAGAGACAGATATGATAAGAAGGACCGGTTTGCAAAGAGGCAAAGATCAGGTCAGAAGGATTCATCTAATGACCCTTCATTCAGCAAAAGGGAGCCAACCTTACTGCAGAAACTTCTTAGTTCAGATATCAAGAGAGATAAAAGTCGCTTATGCCAGGTGTTTAGGTTCATGGTGACGAACTCTTTCTTTAAAGATTTTCCTGACAAACCTTTGAAATTTCCTACTGTAGTAGTTAAAGAAAGTGTGGTGGGGGAAGGTGTGGTTGAAGATTTGTCTTCAGTTGCCGGGAAAGGTGCTTATGGGGGCCGTGACAAGTCCATGTTTGAAAAAGTTGGTAACAATGATTATAAAGATTGTTGTCGCAATGATGATTGTGTTGAAGATGAGGAAGAAGAGGGAGAGATCATCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03015 ko05164 map03015 map05164
Pfam Domains
Protein Families
NUFIP1

Protein Analysis

564

Amino Acids

62.85

Weight (kDa)

9.53

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUFIP1 PF10453 327 - 359 1.1e-08 FMR1-interacting protein 1 (NUFIP1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 788, 1629
AciI CCGC 3 cut(s) 57, 482, 815
AclWI GGATC 1 cut(s) 580
AcoI YGGCCR 2 cut(s) 37, 51
AcsI RAATTY 7 cut(s) 31, 124, 175, 433, 751, 781, 1496
AcuI CTGAAG 1 cut(s) 1542
AfiI CCNNNNNNNGG 9 cut(s) 56, 152, 164, 278, 341, 545, 635, 803, 821
AgeI ACCGGT 1 cut(s) 1305
AgsI TTSAA 8 cut(s) 433, 496, 1007, 1169, 1495, 1547, 1607, 1661
AjnI CCWGG 4 cut(s) 163, 262, 403, 1434
AluBI AGCT 4 cut(s) 44, 72, 731, 1066
AluI AGCT 4 cut(s) 44, 72, 731, 1066
Alw21I GWGCWC 1 cut(s) 648
Alw26I GTCTC 2 cut(s) 840, 1278
Alw44I GTGCAC 1 cut(s) 644
AlwI GGATC 1 cut(s) 580
AoxI GGCC 7 cut(s) 37, 51, 461, 660, 1092, 1107, 1585
ApaLI GTGCAC 1 cut(s) 644
ApeKI GCWGC 2 cut(s) 323, 593
ApoI RAATTY 7 cut(s) 31, 124, 175, 433, 751, 781, 1496
ArsI GACNNNNNNTTYG 2 cut(s) 1315, 1347
AsiGI ACCGGT 1 cut(s) 1305
Asp700I GAANNNNTTC 2 cut(s) 766, 1463
AspS9I GGNCC 7 cut(s) 155, 248, 290, 461, 551, 1303, 1585
AsuC2I CCSGG 2 cut(s) 50, 1567
AsuHPI GGTGA 3 cut(s) 17, 38, 1465
AsuII TTCGAA 1 cut(s) 749
AvaII GGWCC 5 cut(s) 155, 248, 290, 551, 1303
AxyI CCTNAGG 1 cut(s) 588
BaeGI GKGCMC 2 cut(s) 225, 648
BbsI GAAGAC 2 cut(s) 691, 1548
Bbv12I GWGCWC 1 cut(s) 648
BbvCI CCTCAGC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 310, 580
BccI CCATC 6 cut(s) 88, 121, 145, 1048, 1153, 1192
BceAI ACGGC 1 cut(s) 1572
BciT130I CCWGG 4 cut(s) 165, 264, 405, 1436
BcnI CCSGG 2 cut(s) 50, 1567
BcoDI GTCTC 2 cut(s) 840, 1278
BfaI CTAG 2 cut(s) 273, 1693
BfmI CTRYAG 3 cut(s) 594, 1385, 1506
BglI GCCNNNNNGGC 1 cut(s) 469
BglII AGATCT 1 cut(s) 971
BisI GCNGC 2 cut(s) 324, 594
BlpI GCTNAGC 1 cut(s) 905
BlsI GCNGC 2 cut(s) 325, 595
Bme1390I CCNGG 6 cut(s) 50, 165, 264, 405, 1436, 1567
Bme18I GGWCC 5 cut(s) 155, 248, 290, 551, 1303
BmgT120I GGNCC 7 cut(s) 155, 248, 290, 461, 551, 1303, 1585
BmiI GGNNCC 5 cut(s) 156, 241, 250, 1374, 1586
BmrFI CCNGG 6 cut(s) 50, 165, 264, 405, 1436, 1567
BmsI GCATC 2 cut(s) 189, 802
BpiI GAAGAC 2 cut(s) 691, 1548
Bpu10I CCTNAGC 1 cut(s) 159
Bpu1102I GCTNAGC 1 cut(s) 905
Bpu14I TTCGAA 1 cut(s) 749
BpuEI CTTGAG 1 cut(s) 1115
BpuMI CCSGG 2 cut(s) 50, 1567
BsaJI CCNNGG 3 cut(s) 244, 544, 703
BsaWI WCCGGW 1 cut(s) 1305
BsaXI ACNNNNNCTCC 4 cut(s) 1155, 1185, 1223, 1253
Bsc4I CCNNNNNNNGG 9 cut(s) 56, 152, 164, 278, 341, 545, 635, 803, 821
Bse118I RCCGGY 2 cut(s) 53, 1305
Bse21I CCTNAGG 1 cut(s) 588
Bse3DI GCAATG 2 cut(s) 916, 1651
BseBI CCWGG 4 cut(s) 165, 264, 405, 1436
BseDI CCNNGG 3 cut(s) 244, 544, 703
BseGI GGATG 1 cut(s) 793
BseLI CCNNNNNNNGG 9 cut(s) 56, 152, 164, 278, 341, 545, 635, 803, 821
BseMI GCAATG 2 cut(s) 916, 1651
BseMII CTCAG 6 cut(s) 173, 602, 851, 1146, 1167, 1212
BseRI GAGGAG 2 cut(s) 75, 1244
BseSI GKGCMC 2 cut(s) 225, 648
BseX3I CGGCCG 1 cut(s) 51
BseXI GCAGC 2 cut(s) 310, 580
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 7 cut(s) 39, 53, 463, 662, 1094, 1109, 1587
BshTI ACCGGT 1 cut(s) 1305
BsiEI CGRYCG 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 648
BsiSI CCGG 6 cut(s) 36, 50, 54, 663, 1306, 1566
BslFI GGGAC 3 cut(s) 168, 234, 721
BslI CCNNNNNNNGG 9 cut(s) 56, 152, 164, 278, 341, 545, 635, 803, 821
BsmAI GTCTC 2 cut(s) 840, 1278
BsmFI GGGAC 3 cut(s) 168, 234, 721
BsnI GGCC 7 cut(s) 39, 53, 463, 662, 1094, 1109, 1587
Bsp119I TTCGAA 1 cut(s) 749
Bsp1286I GDGCHC 2 cut(s) 225, 648
Bsp143I GATC 5 cut(s) 572, 971, 1259, 1325, 1683
Bsp1720I GCTNAGC 1 cut(s) 905
BspACI CCGC 3 cut(s) 57, 482, 815
BspANI GGCC 7 cut(s) 39, 53, 463, 662, 1094, 1109, 1587
BspCNI CTCAG 6 cut(s) 172, 601, 850, 1147, 1168, 1211
BspHI TCATGA 1 cut(s) 171
BspLI GGNNCC 5 cut(s) 156, 241, 250, 1374, 1586
BspMAI CTGCAG 2 cut(s) 598, 1389
BspPI GGATC 1 cut(s) 580
BspQI GCTCTTC 1 cut(s) 939
BspT104I TTCGAA 1 cut(s) 749
BsrDI GCAATG 2 cut(s) 916, 1651
BsrFI RCCGGY 2 cut(s) 53, 1305
BssAI RCCGGY 2 cut(s) 53, 1305
BssECI CCNNGG 3 cut(s) 244, 544, 703
BssMI GATC 5 cut(s) 572, 971, 1259, 1325, 1683
BssT1I CCWWGG 2 cut(s) 244, 544
Bst2UI CCWGG 4 cut(s) 165, 264, 405, 1436
Bst4CI ACNGT 2 cut(s) 1011, 1507
Bst6I CTCTTC 3 cut(s) 939, 1219, 1668
BstAPI GCANNNNNTGC 1 cut(s) 100
BstBI TTCGAA 1 cut(s) 749
BstC8I GCNNGC 2 cut(s) 55, 1152
BstDEI CTNAG 9 cut(s) 159, 588, 837, 905, 1067, 1155, 1176, 1198, 1397
BstENI CCTNNNNNAGG 1 cut(s) 543
BstF5I GGATG 1 cut(s) 793
BstKTI GATC 5 cut(s) 575, 974, 1262, 1328, 1686
BstMAI GTCTC 2 cut(s) 840, 1278
BstMBI GATC 5 cut(s) 572, 971, 1259, 1325, 1683
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 6 cut(s) 50, 100, 229, 469, 590, 620
BstNI CCWGG 4 cut(s) 165, 264, 405, 1436
BstSCI CCNGG 6 cut(s) 48, 163, 262, 403, 1434, 1565
BstSFI CTRYAG 3 cut(s) 594, 1385, 1506
BstSLI GKGCMC 2 cut(s) 225, 648
BstV1I GCAGC 2 cut(s) 310, 580
BstV2I GAAGAC 2 cut(s) 691, 1548
BstX2I RGATCY 1 cut(s) 971
BstYI RGATCY 1 cut(s) 971
BstZI CGGCCG 1 cut(s) 51
Bsu36I CCTNAGG 1 cut(s) 588
BsuRI GGCC 7 cut(s) 39, 53, 463, 662, 1094, 1109, 1587
BtsCI GGATG 1 cut(s) 793
Cac8I GCNNGC 2 cut(s) 55, 1152
CciI TCATGA 1 cut(s) 171
Cfr10I RCCGGY 2 cut(s) 53, 1305
Cfr13I GGNCC 7 cut(s) 155, 248, 290, 461, 551, 1303, 1585
CsiI ACCWGGT 2 cut(s) 262, 403
CspAI ACCGGT 1 cut(s) 1305
CviAII CATG 6 cut(s) 129, 172, 226, 1242, 1450, 1600
DdeI CTNAG 9 cut(s) 159, 588, 837, 905, 1067, 1155, 1176, 1198, 1397
DpnI GATC 5 cut(s) 574, 973, 1261, 1327, 1685
DpnII GATC 5 cut(s) 572, 971, 1259, 1325, 1683
DraI TTTAAA 1 cut(s) 1471
EaeI YGGCCR 2 cut(s) 37, 51
EagI CGGCCG 1 cut(s) 51
Eam1104I CTCTTC 3 cut(s) 939, 1219, 1668
EarI CTCTTC 3 cut(s) 939, 1219, 1668
EciI GGCGGA 1 cut(s) 471
EclXI CGGCCG 1 cut(s) 51
Eco130I CCWWGG 2 cut(s) 244, 544
Eco32I GATATC 1 cut(s) 1408
Eco47I GGWCC 5 cut(s) 155, 248, 290, 551, 1303
Eco52I CGGCCG 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 1542
Eco81I CCTNAGG 1 cut(s) 588
EcoNI CCTNNNNNAGG 1 cut(s) 543
EcoO109I RGGNCCY 1 cut(s) 155
EcoRI GAATTC 1 cut(s) 751
EcoRII CCWGG 4 cut(s) 163, 262, 403, 1434
EcoRV GATATC 1 cut(s) 1408
EcoT14I CCWWGG 2 cut(s) 244, 544
ErhI CCWWGG 2 cut(s) 244, 544
FaeI CATG 6 cut(s) 132, 175, 229, 1245, 1453, 1603
FaqI GGGAC 3 cut(s) 168, 234, 721
FatI CATG 6 cut(s) 128, 171, 225, 1241, 1449, 1599
FauNDI CATATG 2 cut(s) 213, 466
Fnu4HI GCNGC 2 cut(s) 324, 594
FokI GGATG 1 cut(s) 780
Fsp4HI GCNGC 2 cut(s) 324, 594
FspBI CTAG 2 cut(s) 273, 1693
GluI GCNGC 2 cut(s) 324, 594
HaeIII GGCC 7 cut(s) 39, 53, 463, 662, 1094, 1109, 1587
HapII CCGG 6 cut(s) 36, 50, 54, 663, 1306, 1566
Hin1II CATG 6 cut(s) 132, 175, 229, 1245, 1453, 1603
HpaII CCGG 6 cut(s) 36, 50, 54, 663, 1306, 1566
HphI GGTGA 3 cut(s) 17, 38, 1465
Hpy166II GTNNAC 3 cut(s) 293, 646, 742
Hpy188I TCNGA 9 cut(s) 198, 704, 757, 831, 1090, 1201, 1257, 1335, 1405
Hpy188III TCNNGA 4 cut(s) 172, 938, 1411, 1481
Hpy8I GTNNAC 3 cut(s) 293, 646, 742
HpyAV CCTTC 9 cut(s) 156, 910, 914, 1013, 1113, 1294, 1330, 1365, 1529
HpyCH4III ACNGT 2 cut(s) 1011, 1507
HpyCH4IV ACGT 2 cut(s) 696, 1024
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 100, 229, 469, 590, 620
HpyF3I CTNAG 9 cut(s) 159, 588, 837, 905, 1067, 1155, 1176, 1198, 1397
HpySE526I ACGT 2 cut(s) 696, 1024
Hsp92II CATG 6 cut(s) 132, 175, 229, 1245, 1453, 1603
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Kzo9I GATC 5 cut(s) 572, 971, 1259, 1325, 1683
LguI GCTCTTC 1 cut(s) 939
LmnI GCTCC 3 cut(s) 82, 1123, 1372
Lsp1109I GCAGC 2 cut(s) 310, 580
LweI GCATC 2 cut(s) 189, 802
MabI ACCWGGT 2 cut(s) 262, 403
MaeI CTAG 2 cut(s) 273, 1693
MaeII ACGT 2 cut(s) 696, 1024
MaeIII GTNAC 4 cut(s) 3, 1453, 1589, 1616
MalI GATC 5 cut(s) 574, 973, 1261, 1327, 1685
MboI GATC 5 cut(s) 572, 971, 1259, 1325, 1683
MfeI CAATTG 1 cut(s) 410
MflI RGATCY 1 cut(s) 971
MhlI GDGCHC 2 cut(s) 225, 648
MlyI GAGTC 2 cut(s) 935, 1079
MmeI TCCRAC 1 cut(s) 259
MroNI GCCGGC 1 cut(s) 53
MroXI GAANNNNTTC 2 cut(s) 766, 1463
MseI TTAA 5 cut(s) 108, 339, 1278, 1470, 1515
MslI CAYNNNNRTG 1 cut(s) 216
MspI CCGG 6 cut(s) 36, 50, 54, 663, 1306, 1566
MspR9I CCNGG 6 cut(s) 50, 165, 264, 405, 1436, 1567
MunI CAATTG 1 cut(s) 410
MvaI CCWGG 4 cut(s) 165, 264, 405, 1436
MwoI GCNNNNNNNGC 6 cut(s) 50, 100, 229, 469, 590, 620
NaeI GCCGGC 1 cut(s) 55
NciI CCSGG 2 cut(s) 50, 1567
NdeI CATATG 2 cut(s) 213, 466
NdeII GATC 5 cut(s) 572, 971, 1259, 1325, 1683
NgoMIV GCCGGC 1 cut(s) 53
NlaIII CATG 6 cut(s) 132, 175, 229, 1245, 1453, 1603
NlaIV GGNNCC 5 cut(s) 156, 241, 250, 1374, 1586
NmuCI GTSAC 2 cut(s) 1453, 1589
NspV TTCGAA 1 cut(s) 749
PagI TCATGA 1 cut(s) 171
PciSI GCTCTTC 1 cut(s) 939
PdiI GCCGGC 1 cut(s) 55
PdmI GAANNNNTTC 2 cut(s) 766, 1463
PfeI GAWTC 8 cut(s) 367, 448, 502, 682, 949, 1138, 1202, 1340
PinAI ACCGGT 1 cut(s) 1305
PkrI GCNGC 2 cut(s) 325, 595
PleI GAGTC 2 cut(s) 935, 1079
PpsI GAGTC 2 cut(s) 935, 1079
PpuMI RGGWCCY 1 cut(s) 155
PsiI TTATAA 2 cut(s) 788, 1629
Psp5II RGGWCCY 1 cut(s) 155
Psp6I CCWGG 4 cut(s) 163, 262, 403, 1434
PspGI CCWGG 4 cut(s) 163, 262, 403, 1434
PspN4I GGNNCC 5 cut(s) 156, 241, 250, 1374, 1586
PspPI GGNCC 7 cut(s) 155, 248, 290, 461, 551, 1303, 1585
PspPPI RGGWCCY 1 cut(s) 155
PstI CTGCAG 2 cut(s) 598, 1389
PsuI RGATCY 1 cut(s) 971
RseI CAYNNNNRTG 1 cut(s) 216
SapI GCTCTTC 1 cut(s) 939
SaqAI TTAA 5 cut(s) 108, 339, 1278, 1470, 1515
SatI GCNGC 2 cut(s) 324, 594
Sau3AI GATC 5 cut(s) 572, 971, 1259, 1325, 1683
Sau96I GGNCC 7 cut(s) 155, 248, 290, 461, 551, 1303, 1585
SchI GAGTC 2 cut(s) 935, 1079
ScrFI CCNGG 6 cut(s) 50, 165, 264, 405, 1436, 1567
SduI GDGCHC 2 cut(s) 225, 648
SexAI ACCWGGT 2 cut(s) 262, 403
SfaNI GCATC 2 cut(s) 189, 802
SfcI CTRYAG 3 cut(s) 594, 1385, 1506
SfuI TTCGAA 1 cut(s) 749
SinI GGWCC 5 cut(s) 155, 248, 290, 551, 1303
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 1130
SmoI CTYRAG 1 cut(s) 1130
SsiI CCGC 3 cut(s) 57, 482, 815
SspI AATATT 1 cut(s) 457
SspMI CTAG 2 cut(s) 273, 1693
StyD4I CCNGG 6 cut(s) 48, 163, 262, 403, 1434, 1565
StyI CCWWGG 2 cut(s) 244, 544
TaaI ACNGT 2 cut(s) 1011, 1507
TaiI ACGT 2 cut(s) 699, 1027
TaqI TCGA 2 cut(s) 149, 749
TfiI GAWTC 8 cut(s) 367, 448, 502, 682, 949, 1138, 1202, 1340
Tru1I TTAA 5 cut(s) 108, 339, 1278, 1470, 1515
Tru9I TTAA 5 cut(s) 108, 339, 1278, 1470, 1515
TseFI GTSAC 2 cut(s) 1453, 1589
TseI GCWGC 2 cut(s) 323, 593
Tsp45I GTSAC 2 cut(s) 1453, 1589
TspGWI ACGGA 1 cut(s) 1007
VneI GTGCAC 1 cut(s) 644
VpaK11BI GGWCC 5 cut(s) 155, 248, 290, 551, 1303
XagI CCTNNNNNAGG 1 cut(s) 543
XapI RAATTY 7 cut(s) 31, 124, 175, 433, 751, 781, 1496
XmnI GAANNNNTTC 2 cut(s) 766, 1463
XspI CTAG 2 cut(s) 273, 1693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.