RchiOBHm_Chr3g0493801

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005127
Physical Location & Seq
Forward (+)
41316383 .. 41317741
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
ATGCAAAACCCTCTTCCCAACCCCAATAGCTGGGAGGAAAGTTTTGGCAATGGGGATGAAGGGTTTGTGCACATCTCTTTGGCAAGAGACAAGCACATGTGGGTGACGTGGGTCACTGGTGATAGATCTGCTCCTTCAATTGTTGAATATGGAACATCATCGGGAAAATACGGCTCCCCTCGGTGGGATACCTTTGGTGAGTTGGTTCAGCCACTTGCAAGTGCAAGGCCATGGATGGTAACCCAGGGAAACCATGAGAAGGACAGTATACCATTCTTGAAGGATGGGTTTGAATCCTATAATTCTAGGCGGAAAATGCCGTATAAAGAGAGTGGATCTAGCTCGAATCTTTATTACTCCTTTGAACTTGCAGGTGCTCATATTATCATGCTTGGCTCGTATATTGATTATGATAAATATTTAGATCAATACAAGTGGTTAAAGGTTAGTTGCTTCTTCTTTCTTGTCAGAAGGAATCCTATTTATCTGCTACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

165

Amino Acids

19.08

Weight (kDa)

6.51

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 362
Acc36I ACCTGC 1 cut(s) 362
AccB7I CCANNNNNTGG 1 cut(s) 30
AccI GTMKAC 1 cut(s) 268
AciI CCGC 1 cut(s) 310
AclWI GGATC 1 cut(s) 343
AfiI CCNNNNNNNGG 4 cut(s) 30, 183, 184, 259
AflIII ACRYGT 1 cut(s) 96
AgsI TTSAA 5 cut(s) 138, 146, 280, 293, 365
AjiI CACGTC 1 cut(s) 108
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 2 cut(s) 30, 342
AluI AGCT 2 cut(s) 30, 342
Alw21I GWGCWC 2 cut(s) 72, 379
Alw26I GTCTC 1 cut(s) 81
Alw44I GTGCAC 1 cut(s) 68
AlwI GGATC 1 cut(s) 343
AoxI GGCC 1 cut(s) 227
ApaLI GTGCAC 1 cut(s) 68
AsuHPI GGTGA 3 cut(s) 115, 131, 209
BaeGI GKGCMC 1 cut(s) 72
Bbv12I GWGCWC 2 cut(s) 72, 379
BccI CCATC 2 cut(s) 229, 278
BceAI ACGGC 2 cut(s) 187, 304
BciT130I CCWGG 1 cut(s) 245
BciVI GTATCC 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 2 cut(s) 306, 339
BfuAI ACCTGC 1 cut(s) 362
BfuI GTATCC 1 cut(s) 181
BglII AGATCT 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 245
BmgBI CACGTC 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 245
BoxI GACNNNNGTC 1 cut(s) 110
BsaJI CCNNGG 4 cut(s) 179, 230, 243, 244
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 183, 184, 259
Bse1I ACTGG 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 55
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 4 cut(s) 179, 230, 243, 244
BseGI GGATG 3 cut(s) 61, 240, 289
BseLI CCNNNNNNNGG 4 cut(s) 30, 183, 184, 259
BseMI GCAATG 1 cut(s) 55
BseNI ACTGG 1 cut(s) 121
BseSI GKGCMC 1 cut(s) 72
BseYI CCCAGC 1 cut(s) 30
BshFI GGCC 1 cut(s) 229
BsiHKAI GWGCWC 2 cut(s) 72, 379
BslI CCNNNNNNNGG 4 cut(s) 30, 183, 184, 259
BsmAI GTCTC 1 cut(s) 81
BsnI GGCC 1 cut(s) 229
Bsp1286I GDGCHC 2 cut(s) 72, 379
Bsp143I GATC 3 cut(s) 125, 335, 424
Bsp19I CCATGG 1 cut(s) 230
BspACI CCGC 1 cut(s) 310
BspANI GGCC 1 cut(s) 229
BspLI GGNNCC 1 cut(s) 175
BspMI ACCTGC 1 cut(s) 362
BspPI GGATC 1 cut(s) 343
BsrDI GCAATG 1 cut(s) 55
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 4 cut(s) 179, 230, 243, 244
BssMI GATC 3 cut(s) 125, 335, 424
BssNAI GTATAC 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 230
Bst1107I GTATAC 1 cut(s) 269
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 230
BstEII GGTNACC 1 cut(s) 238
BstF5I GGATG 3 cut(s) 61, 240, 289
BstKTI GATC 3 cut(s) 128, 338, 427
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 3 cut(s) 125, 335, 424
BstMWI GCNNNNNNNGC 1 cut(s) 316
BstNI CCWGG 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 100
BstPAI GACNNNNGTC 1 cut(s) 110
BstPI GGTNACC 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 243
BstSLI GKGCMC 1 cut(s) 72
BstX2I RGATCY 2 cut(s) 125, 335
BstYI RGATCY 2 cut(s) 125, 335
BstZ17I GTATAC 1 cut(s) 269
BsuI GTATCC 1 cut(s) 181
BsuRI GGCC 1 cut(s) 229
BtgI CCRYGG 1 cut(s) 230
BtrI CACGTC 1 cut(s) 108
BtsCI GGATG 3 cut(s) 61, 240, 289
BtsIMutI CAGTG 1 cut(s) 114
BveI ACCTGC 1 cut(s) 362
CspCI CAANNNNNGTGG 2 cut(s) 416, 451
CviAII CATG 4 cut(s) 97, 231, 254, 388
CviJI RGCY 6 cut(s) 30, 174, 211, 229, 342, 396
CviKI_1 RGCY 6 cut(s) 30, 174, 211, 229, 342, 396
DpnI GATC 3 cut(s) 127, 337, 426
DpnII GATC 3 cut(s) 125, 335, 424
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
EciI GGCGGA 1 cut(s) 325
Eco130I CCWWGG 1 cut(s) 230
Eco91I GGTNACC 1 cut(s) 238
EcoO65I GGTNACC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 243
EcoT14I CCWWGG 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 4 cut(s) 100, 234, 257, 391
FatI CATG 4 cut(s) 96, 230, 253, 387
FblI GTMKAC 1 cut(s) 268
FokI GGATG 3 cut(s) 68, 247, 296
FspBI CTAG 2 cut(s) 306, 339
GsaI CCCAGC 1 cut(s) 34
HaeIII GGCC 1 cut(s) 229
Hin1II CATG 4 cut(s) 100, 234, 257, 391
HinfI GANTC 3 cut(s) 293, 346, 475
HphI GGTGA 3 cut(s) 115, 131, 209
Hpy166II GTNNAC 2 cut(s) 70, 269
Hpy188I TCNGA 1 cut(s) 470
Hpy188III TCNNGA 2 cut(s) 162, 277
Hpy8I GTNNAC 2 cut(s) 70, 269
HpyAV CCTTC 5 cut(s) 53, 144, 253, 274, 465
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 5 cut(s) 4, 70, 218, 224, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 4 cut(s) 100, 234, 257, 391
Kzo9I GATC 3 cut(s) 125, 335, 424
LmnI GCTCC 2 cut(s) 136, 179
LpnPI CCDG 5 cut(s) 16, 102, 230, 257, 357
MaeI CTAG 2 cut(s) 306, 339
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 3 cut(s) 103, 112, 238
MalI GATC 3 cut(s) 127, 337, 426
MboI GATC 3 cut(s) 125, 335, 424
MboII GAAGA 2 cut(s) 5, 448
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 2 cut(s) 125, 335
MhlI GDGCHC 2 cut(s) 72, 379
MluCI AATT 2 cut(s) 138, 301
MnlI CCTC 3 cut(s) 21, 28, 189
MseI TTAA 2 cut(s) 440, 496
MslI CAYNNNNRTG 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 245
MunI CAATTG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 316
NcoI CCATGG 1 cut(s) 230
NdeII GATC 3 cut(s) 125, 335, 424
NlaIII CATG 4 cut(s) 100, 234, 257, 391
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 2 cut(s) 103, 112
NspI RCATGY 1 cut(s) 100
PaqCI CACCTGC 1 cut(s) 362
PasI CCCWGGG 1 cut(s) 244
PciI ACATGT 1 cut(s) 96
PfeI GAWTC 3 cut(s) 293, 346, 475
PflMI CCANNNNNTGG 1 cut(s) 30
PscI ACATGT 1 cut(s) 96
PshAI GACNNNNGTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 243
PspEI GGTNACC 1 cut(s) 238
PspFI CCCAGC 1 cut(s) 30
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 175
PsuI RGATCY 2 cut(s) 125, 335
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 2 cut(s) 440, 496
Sau3AI GATC 3 cut(s) 125, 335, 424
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 2 cut(s) 72, 379
SetI ASST 6 cut(s) 32, 110, 194, 344, 376, 447
SmiMI CAYNNNNRTG 1 cut(s) 101
Sse9I AATT 2 cut(s) 138, 301
SsiI CCGC 1 cut(s) 310
SspI AATATT 1 cut(s) 419
SspMI CTAG 2 cut(s) 306, 339
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 344
TasI AATT 2 cut(s) 138, 301
TfiI GAWTC 3 cut(s) 293, 346, 475
Tru1I TTAA 2 cut(s) 440, 496
Tru9I TTAA 2 cut(s) 440, 496
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 2 cut(s) 103, 112
Tsp45I GTSAC 2 cut(s) 103, 112
TspDTI ATGAA 1 cut(s) 72
TspRI CASTG 1 cut(s) 121
Van91I CCANNNNNTGG 1 cut(s) 30
VneI GTGCAC 1 cut(s) 68
XceI RCATGY 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 268
XspI CTAG 2 cut(s) 306, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.