Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005127

Physical Location & Seq

Genomic Coordinates Reverse (-)

33152320 .. 33154835

Gene Structure 2516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG301400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAATCCAAGCTCTTTTTGTTGTTAGTCACGGTGGGCTTCACAGTCATCGCAGGCGAGTATGTCCGGCCTCAGCCTCGCAAAGACCTTCAATTCCCATGGGACGCAAAACCCGCTTCCCAACCCCAACAGGTGCACATCTCTTTGGCAGGAGACAAGCACATGAGAGTGACGTGGGTCACTGGTGATAGATCTGCTCCTTCAATTGTTGAATATGGAACATCATCGGGGAAATACAGCTCCGTAGCTCAAGGAGAAAGCACTTCGTATAGTTATATGATCTATAAGTCTGGACTGATACACCACACTGTCATTGGTCCTCTTGAACATGATACAGTTTACTTCTACAAATGTGGAGGACAAGGTCCTGAGTTTCAGCTAAAGACCCCTGCAGCTCAGTTTCCAATTACTTTTGCTGTGGCAGGAGATCTTGGTCAAACAGGATGGACAAAGTCAACCCTTGACCACATCGAGCGCTGCAAGTATGATGTGCATATCCTTCCTGGAGACCTTTCATATGCTGATTATTTGCAGCCTCGGTGGGATACCTTTGGTGAGCTGGTTCAGCCACTCGCAAGTGCAAGGCCATGGATGGTAACCCAGGGAAACCATGAGAAGGAGAGCATACCATTCTTGAAGGATGGGTTTGAATCCTATAATTCTAGGTGGAAAATGCCGTATAAAGAGAGTGGATCGAGCTCGAATCTTTATTACTCCTTTGAAGTTGCAGGCGCTCATATTATCATGCTTGGCTCGTATACTGATTATGATGAATATTCAGATCAATACAAGTGGTTGAAGGCTGATCTGTCAAAGGTAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

274

Amino Acids

30.93

Weight (kDa)

5.84

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pur_ac_phosph_N	PF16656	42 - 129	3.7e-21	Purple acid Phosphatase, N-terminal domain
Metallophos	PF00149	137 - 268	6.9e-09	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20500
fragaria_vesca	FvH4_3g22510 FvH4_3g22510 FvH4_3g22510 FvH4_3g22510
malus_domestica	MD03G1203900.v1.1 MD11G1220800.v1.1
prunus_persica	Prupe.4G211500_v2.0.a1 Prupe.4G211500_v2.0.a1
pyrus_communis	pycom03g15460 pycom11g19470
rosa_chinensis	RchiOBHm_Chr3g0493801 RchiOBHm_Chr5g0039161
rosa_laevigata	RLG00000033899
rosa_multiflora	Rmu_sc0000533.1_g000006 Rmu_sc0002235.1_g000065
rosa_roxburghii	Rroxscaffold_1G00040430 Rroxscaffold_1G00041930 Rroxscaffold_1G00041940
rosa_rugosa	Rorug05G0177100
rosa_samantha	Rh5AG263600 Rh5AG263900 Rh5BG268500 Rh5BG268800 Rh5CG301400 Rh5CG301800 Rh5DG276300 Rh5DG276500
rosa_wichuraiana	Rw5G024650 Rw5G024680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	758, 819
AciI	CCGC	1 cut(s)	114
AclWI	GGATC	1 cut(s)	700
AfeI	AGCGCT	1 cut(s)	476
AfiI	CCNNNNNNNGG	1 cut(s)	616
AgsI	TTSAA	8 cut(s)	92, 204, 212, 326, 637, 650, 722, 799
AjiI	CACGTC	1 cut(s)	174
AjnI	CCWGG	2 cut(s)	502, 600
AluBI	AGCT	7 cut(s)	13, 240, 248, 379, 395, 559, 699
AluI	AGCT	7 cut(s)	13, 240, 248, 379, 395, 559, 699
Alw21I	GWGCWC	2 cut(s)	138, 701
Alw26I	GTCTC	2 cut(s)	147, 501
Alw44I	GTGCAC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	700
Aor51HI	AGCGCT	1 cut(s)	476
AoxI	GGCC	2 cut(s)	68, 584
ApaLI	GTGCAC	1 cut(s)	134
ApeKI	GCWGC	3 cut(s)	392, 477, 532
AspLEI	GCGC	2 cut(s)	477, 734
AspS9I	GGNCC	2 cut(s)	317, 365
AsuHPI	GGTGA	2 cut(s)	197, 566
AvaII	GGWCC	2 cut(s)	317, 365
BaeGI	GKGCMC	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	701
Bbv12I	GWGCWC	2 cut(s)	138, 701
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	3 cut(s)	404, 464, 544
BccI	CCATC	3 cut(s)	438, 586, 635
BceAI	ACGGC	1 cut(s)	661
BciT130I	CCWGG	2 cut(s)	504, 602
BciVI	GTATCC	1 cut(s)	538
BcoDI	GTCTC	2 cut(s)	147, 501
BfaI	CTAG	1 cut(s)	663
BfmI	CTRYAG	1 cut(s)	390
BfoI	RGCGCY	2 cut(s)	478, 735
BfuI	GTATCC	1 cut(s)	538
BglII	AGATCT	2 cut(s)	191, 427
BisI	GCNGC	3 cut(s)	393, 478, 533
BlsI	GCNGC	3 cut(s)	394, 479, 534
Bme1390I	CCNGG	2 cut(s)	504, 602
Bme18I	GGWCC	2 cut(s)	317, 365
BmgBI	CACGTC	1 cut(s)	174
BmgT120I	GGNCC	2 cut(s)	317, 365
BmrFI	CCNGG	2 cut(s)	504, 602
BoxI	GACNNNNGTC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	525
Bpu10I	CCTNAGC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	501
BsaJI	CCNNGG	5 cut(s)	98, 536, 587, 600, 601
Bsc4I	CCNNNNNNNGG	1 cut(s)	616
Bse1I	ACTGG	1 cut(s)	187
BseBI	CCWGG	2 cut(s)	504, 602
BseDI	CCNNGG	5 cut(s)	98, 536, 587, 600, 601
BseGI	GGATG	3 cut(s)	449, 597, 646
BseLI	CCNNNNNNNGG	1 cut(s)	616
BseMII	CTCAG	3 cut(s)	86, 360, 410
BseNI	ACTGG	1 cut(s)	187
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	3 cut(s)	404, 464, 544
BshFI	GGCC	2 cut(s)	70, 586
BsiHKAI	GWGCWC	2 cut(s)	138, 701
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	616
BsmAI	GTCTC	2 cut(s)	147, 501
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	2 cut(s)	70, 586
Bso31I	GGTCTC	1 cut(s)	501
Bsp1286I	GDGCHC	2 cut(s)	138, 701
Bsp143I	GATC	6 cut(s)	191, 279, 427, 692, 781, 805
Bsp19I	CCATGG	2 cut(s)	98, 587
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	2 cut(s)	70, 586
BspCNI	CTCAG	3 cut(s)	85, 361, 409
BspMAI	CTGCAG	1 cut(s)	394
BspPI	GGATC	1 cut(s)	700
BspTNI	GGTCTC	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	5 cut(s)	98, 536, 587, 600, 601
BssMI	GATC	6 cut(s)	191, 279, 427, 692, 781, 805
BssNAI	GTATAC	1 cut(s)	759
BssT1I	CCWWGG	2 cut(s)	98, 587
Bst1107I	GTATAC	1 cut(s)	759
Bst2UI	CCWGG	2 cut(s)	504, 602
Bst4CI	ACNGT	4 cut(s)	34, 46, 310, 337
BstC8I	GCNNGC	2 cut(s)	55, 730
BstDEI	CTNAG	3 cut(s)	72, 369, 396
BstDSI	CCRYGG	2 cut(s)	98, 587
BstEII	GGTNACC	1 cut(s)	595
BstF5I	GGATG	3 cut(s)	449, 597, 646
BstH2I	RGCGCY	2 cut(s)	478, 735
BstHHI	GCGC	2 cut(s)	477, 734
BstKTI	GATC	6 cut(s)	194, 282, 430, 695, 784, 808
BstMAI	GTCTC	2 cut(s)	147, 501
BstMBI	GATC	6 cut(s)	191, 279, 427, 692, 781, 805
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 565
BstNI	CCWGG	2 cut(s)	504, 602
BstPAI	GACNNNNGTC	1 cut(s)	176
BstPI	GGTNACC	1 cut(s)	595
BstSCI	CCNGG	2 cut(s)	502, 600
BstSFI	CTRYAG	1 cut(s)	390
BstSLI	GKGCMC	1 cut(s)	138
BstV1I	GCAGC	3 cut(s)	404, 464, 544
BstX2I	RGATCY	2 cut(s)	191, 427
BstYI	RGATCY	2 cut(s)	191, 427
BstZ17I	GTATAC	1 cut(s)	759
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	2 cut(s)	70, 586
BtgI	CCRYGG	2 cut(s)	98, 587
BtgZI	GCGATG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	174
BtsCI	GGATG	3 cut(s)	449, 597, 646
BtsIMutI	CAGTG	2 cut(s)	180, 306
Cac8I	GCNNGC	2 cut(s)	55, 730
CfoI	GCGC	2 cut(s)	477, 734
Cfr13I	GGNCC	2 cut(s)	317, 365
CseI	GACGC	1 cut(s)	113
CspCI	CAANNNNNGTGG	2 cut(s)	773, 808
CviAII	CATG	6 cut(s)	99, 163, 329, 588, 611, 745
DdeI	CTNAG	3 cut(s)	72, 369, 396
DpnI	GATC	6 cut(s)	193, 281, 429, 694, 783, 807
DpnII	GATC	6 cut(s)	191, 279, 427, 692, 781, 805
Ecl136II	GAGCTC	1 cut(s)	699
Eco130I	CCWWGG	2 cut(s)	98, 587
Eco24I	GRGCYC	1 cut(s)	701
Eco31I	GGTCTC	1 cut(s)	501
Eco47I	GGWCC	2 cut(s)	317, 365
Eco47III	AGCGCT	1 cut(s)	476
Eco53kI	GAGCTC	1 cut(s)	699
Eco91I	GGTNACC	1 cut(s)	595
EcoICRI	GAGCTC	1 cut(s)	699
EcoO109I	RGGNCCY	1 cut(s)	365
EcoO65I	GGTNACC	1 cut(s)	595
EcoRII	CCWGG	2 cut(s)	502, 600
EcoT14I	CCWWGG	2 cut(s)	98, 587
EcoT38I	GRGCYC	1 cut(s)	701
ErhI	CCWWGG	2 cut(s)	98, 587
FaeI	CATG	6 cut(s)	102, 166, 332, 591, 614, 748
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	6 cut(s)	98, 162, 328, 587, 610, 744
FauI	CCCGC	1 cut(s)	121
FauNDI	CATATG	1 cut(s)	517
FblI	GTMKAC	2 cut(s)	758, 819
Fnu4HI	GCNGC	3 cut(s)	393, 478, 533
FokI	GGATG	3 cut(s)	456, 604, 653
FriOI	GRGCYC	1 cut(s)	701
Fsp4HI	GCNGC	3 cut(s)	393, 478, 533
FspBI	CTAG	1 cut(s)	663
GlaI	GCGC	2 cut(s)	476, 733
GluI	GCNGC	3 cut(s)	393, 478, 533
GsuI	CTGGAG	1 cut(s)	525
HaeII	RGCGCY	2 cut(s)	478, 735
HaeIII	GGCC	2 cut(s)	70, 586
HapII	CCGG	1 cut(s)	67
HgaI	GACGC	1 cut(s)	113
HhaI	GCGC	2 cut(s)	477, 734
Hin1II	CATG	6 cut(s)	102, 166, 332, 591, 614, 748
Hin6I	GCGC	2 cut(s)	475, 732
HinP1I	GCGC	2 cut(s)	475, 732
HincII	GTYRAC	1 cut(s)	456
HindII	GTYRAC	1 cut(s)	456
HinfI	GANTC	3 cut(s)	5, 650, 703
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	2 cut(s)	197, 566
Hpy166II	GTNNAC	5 cut(s)	136, 340, 456, 759, 820
Hpy188I	TCNGA	1 cut(s)	781
Hpy188III	TCNNGA	4 cut(s)	291, 323, 368, 634
Hpy8I	GTNNAC	5 cut(s)	136, 340, 456, 759, 820
HpyAV	CCTTC	6 cut(s)	98, 210, 509, 610, 631, 793
HpyCH4III	ACNGT	4 cut(s)	34, 46, 310, 337
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	7 cut(s)	136, 392, 480, 493, 532, 581, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 565
HpyF3I	CTNAG	3 cut(s)	72, 369, 396
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	6 cut(s)	102, 166, 332, 591, 614, 748
HspAI	GCGC	2 cut(s)	475, 732
Kzo9I	GATC	6 cut(s)	191, 279, 427, 692, 781, 805
LmnI	GCTCC	2 cut(s)	202, 245
Lsp1109I	GCAGC	3 cut(s)	404, 464, 544
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	4 cut(s)	28, 169, 178, 595
MalI	GATC	6 cut(s)	193, 281, 429, 694, 783, 807
MboI	GATC	6 cut(s)	191, 279, 427, 692, 781, 805
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	2 cut(s)	191, 427
MhlI	GDGCHC	2 cut(s)	138, 701
MluCI	AATT	4 cut(s)	92, 204, 405, 658
MnlI	CCTC	5 cut(s)	81, 87, 330, 350, 546
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	2 cut(s)	504, 602
MunI	CAATTG	1 cut(s)	204
MvaI	CCWGG	2 cut(s)	504, 602
MwoI	GCNNNNNNNGC	2 cut(s)	113, 565
NcoI	CCATGG	2 cut(s)	98, 587
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	6 cut(s)	191, 279, 427, 692, 781, 805
NlaIII	CATG	6 cut(s)	102, 166, 332, 591, 614, 748
NmuCI	GTSAC	3 cut(s)	28, 169, 178
PasI	CCCWGGG	1 cut(s)	601
PfeI	GAWTC	3 cut(s)	5, 650, 703
PflFI	GACNNNGTC	2 cut(s)	363, 451
PfoI	TCCNGGA	1 cut(s)	502
PkrI	GCNGC	3 cut(s)	394, 479, 534
PpuMI	RGGWCCY	1 cut(s)	365
PshAI	GACNNNNGTC	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	701
Psp5II	RGGWCCY	1 cut(s)	365
Psp6I	CCWGG	2 cut(s)	502, 600
PspEI	GGTNACC	1 cut(s)	595
PspGI	CCWGG	2 cut(s)	502, 600
PspPI	GGNCC	2 cut(s)	317, 365
PspPPI	RGGWCCY	1 cut(s)	365
PstI	CTGCAG	1 cut(s)	394
PsuI	RGATCY	2 cut(s)	191, 427
PsyI	GACNNNGTC	2 cut(s)	363, 451
RseI	CAYNNNNRTG	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	701
SatI	GCNGC	3 cut(s)	393, 478, 533
Sau3AI	GATC	6 cut(s)	191, 279, 427, 692, 781, 805
Sau96I	GGNCC	2 cut(s)	317, 365
ScrFI	CCNGG	2 cut(s)	504, 602
SduI	GDGCHC	2 cut(s)	138, 701
SfcI	CTRYAG	1 cut(s)	390
SinI	GGWCC	2 cut(s)	317, 365
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	4 cut(s)	92, 204, 405, 658
SsiI	CCGC	1 cut(s)	114
SspI	AATATT	1 cut(s)	776
SspMI	CTAG	1 cut(s)	663
SstI	GAGCTC	1 cut(s)	701
StyD4I	CCNGG	2 cut(s)	502, 600
StyI	CCWWGG	2 cut(s)	98, 587
TaaI	ACNGT	4 cut(s)	34, 46, 310, 337
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	3 cut(s)	471, 695, 701
TasI	AATT	4 cut(s)	92, 204, 405, 658
TfiI	GAWTC	3 cut(s)	5, 650, 703
TscAI	CASTG	2 cut(s)	187, 313
TseFI	GTSAC	3 cut(s)	28, 169, 178
TseI	GCWGC	3 cut(s)	392, 477, 532
Tsp45I	GTSAC	3 cut(s)	28, 169, 178
TspDTI	ATGAA	2 cut(s)	504, 786
TspGWI	ACGGA	1 cut(s)	232
TspRI	CASTG	2 cut(s)	187, 313
Tth111I	GACNNNGTC	2 cut(s)	363, 451
VneI	GTGCAC	1 cut(s)	134
VpaK11BI	GGWCC	2 cut(s)	317, 365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311
XmiI	GTMKAC	2 cut(s)	758, 819
XspI	CTAG	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.