Rh5AG263900

Purple acid phosphatase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
34653844 .. 34661831
7988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG263900.1

Sequence Viewer

Length: 327 bp
ATGATTTATAATACAAACCTGGAGCATCGGCTTGTTCTGATACTTTTGACTTCTTTTTCTTCTGAGGAATTCTATGAGGAAGTGAAAATGGAAAATGCAAAAGAGAGATCAGGTTACAGGTCTTCACAGAAGGCTGCTATTAAGGCTTCCAAAAAACCAAAGAATTCTGATGCTGCACATCAGGTTTACTTCTACAAATGTGGAGGACAAGGTCCTGAGTTTCAGCTCAAGACCCCTGCAGCTCAGTTTCCAATTACTTTTGCTGTGGCAGGAGTTCTTGGTCAAACTGGATGGATAAAGTCAACCCTAGACCACATCGAGCGCTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

108

Amino Acids

12.17

Weight (kDa)

9.04

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 9
AcsI RAATTY 2 cut(s) 68, 163
AfeI AGCGCT 1 cut(s) 323
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 2 cut(s) 226, 242
AluI AGCT 2 cut(s) 226, 242
Aor51HI AGCGCT 1 cut(s) 323
ApeKI GCWGC 3 cut(s) 134, 173, 239
ApoI RAATTY 2 cut(s) 68, 163
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 212
AvaII GGWCC 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 114
BbvI GCAGC 3 cut(s) 121, 160, 251
BccI CCATC 1 cut(s) 285
BciT130I CCWGG 1 cut(s) 20
BfaI CTAG 1 cut(s) 308
BfmI CTRYAG 1 cut(s) 237
BfoI RGCGCY 1 cut(s) 325
BisI GCNGC 3 cut(s) 135, 174, 240
BlsI GCNGC 3 cut(s) 136, 175, 241
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 212
BmgT120I GGNCC 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 20
BmsI GCATC 2 cut(s) 34, 160
BpiI GAAGAC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 292
BseBI CCWGG 1 cut(s) 20
BseGI GGATG 1 cut(s) 296
BseMII CTCAG 3 cut(s) 54, 207, 257
BseNI ACTGG 1 cut(s) 292
BseXI GCAGC 3 cut(s) 121, 160, 251
BsgI GTGCAG 1 cut(s) 159
Bsp143I GATC 1 cut(s) 107
BspCNI CTCAG 3 cut(s) 55, 208, 256
BspMAI CTGCAG 1 cut(s) 241
BsrI ACTGG 1 cut(s) 292
BssMI GATC 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 20
BstDEI CTNAG 3 cut(s) 63, 216, 243
BstF5I GGATG 1 cut(s) 296
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 1 cut(s) 110
BstMBI GATC 1 cut(s) 107
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 237
BstV1I GCAGC 3 cut(s) 121, 160, 251
BstV2I GAAGAC 1 cut(s) 114
BtsCI GGATG 1 cut(s) 296
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 212
CviJI RGCY 5 cut(s) 31, 134, 146, 226, 242
CviKI_1 RGCY 5 cut(s) 31, 134, 146, 226, 242
DdeI CTNAG 3 cut(s) 63, 216, 243
DpnI GATC 1 cut(s) 109
DpnII GATC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 212
Eco47III AGCGCT 1 cut(s) 323
EcoO109I RGGNCCY 1 cut(s) 212
EcoRI GAATTC 2 cut(s) 68, 163
EcoRII CCWGG 1 cut(s) 18
FaiI YATR 2 cut(s) 9, 75
Fnu4HI GCNGC 3 cut(s) 135, 174, 240
FokI GGATG 1 cut(s) 303
Fsp4HI GCNGC 3 cut(s) 135, 174, 240
FspBI CTAG 1 cut(s) 308
GlaI GCGC 1 cut(s) 323
GluI GCNGC 3 cut(s) 135, 174, 240
GsuI CTGGAG 1 cut(s) 41
HaeII RGCGCY 1 cut(s) 325
HhaI GCGC 1 cut(s) 324
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HincII GTYRAC 1 cut(s) 303
HindII GTYRAC 1 cut(s) 303
Hpy166II GTNNAC 2 cut(s) 187, 303
Hpy188I TCNGA 3 cut(s) 39, 64, 169
Hpy188III TCNNGA 2 cut(s) 215, 229
Hpy8I GTNNAC 2 cut(s) 187, 303
HpyAV CCTTC 1 cut(s) 124
HpyCH4V TGCA 3 cut(s) 98, 176, 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 3 cut(s) 63, 216, 243
HspAI GCGC 1 cut(s) 322
Kzo9I GATC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 9 cut(s) 5, 32, 96, 103, 167, 228, 249, 255, 273
Lsp1109I GCAGC 3 cut(s) 121, 160, 251
LweI GCATC 2 cut(s) 34, 160
MaeI CTAG 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 113
MalI GATC 1 cut(s) 109
MboI GATC 1 cut(s) 107
MboII GAAGA 2 cut(s) 51, 114
MluCI AATT 3 cut(s) 68, 163, 252
MnlI CCTC 3 cut(s) 58, 70, 197
MseI TTAA 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 143
NdeII GATC 1 cut(s) 107
PflFI GACNNNGTC 1 cut(s) 210
PkrI GCNGC 3 cut(s) 136, 175, 241
PpuMI RGGWCCY 1 cut(s) 212
PsiI TTATAA 1 cut(s) 9
Psp5II RGGWCCY 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspPI GGNCC 1 cut(s) 212
PspPPI RGGWCCY 1 cut(s) 212
PstI CTGCAG 1 cut(s) 241
PsyI GACNNNGTC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 3 cut(s) 135, 174, 240
Sau3AI GATC 1 cut(s) 107
Sau96I GGNCC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 20
SetI ASST 7 cut(s) 21, 115, 122, 186, 214, 228, 244
SfaNI GCATC 2 cut(s) 34, 160
SfcI CTRYAG 1 cut(s) 237
SinI GGWCC 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 3 cut(s) 68, 163, 252
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 1 cut(s) 18
TaqI TCGA 1 cut(s) 318
TasI AATT 3 cut(s) 68, 163, 252
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseI GCWGC 3 cut(s) 134, 173, 239
Tth111I GACNNNGTC 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 212
XapI RAATTY 2 cut(s) 68, 163
XspI CTAG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.