Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0005127

Physical Location & Seq

Genomic Coordinates Reverse (-)

35047325 .. 35050301

Gene Structure 2977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G024680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAATCCAAGCTCTTTTTGTTGTTCATCACGGTGGGCTTCACAGTCATCGCAGGCGAGTATGTCCGGCCTCAGCCTCGCAAAGACCTCCAATTCCCATGGGACGCAAAACCCTCTTCCCAACCCCAACAGGTGCACATCTCTTTGGCAGGAGACAAGCACATGAGAGTGACGTCGGTCACTGGAGTTCTTGGTCAAACTGGATGGACAAAGTCAACCCTAGACCACACCGAGCGCTGTAAGTATGATGTCCATATCCTTCCTGGAGACTTTTCATATGCTGATTATTTGCAGCCTTGGTGGGATACCTTTGGTGAGCTGGTTCAGCCACTCGCAAGTGCAAGGCCATGGATGATAACCCAGGGAAACCATGAGAAGGAGAGGATACCATTCTTGAAGGATGGGTTTGAATCCTATAATTCTAGGTGGAAAATGAAAGAGAGTGGATCGAGCTCGAATCTTTATTACTCCTTTGAAGTTGCAGGTGCTCATATTATCATGCTTGGCTCGTATACTGATTATGATGAATATTCAGATCAATACAAGTGGTTGAAGAACCGTGTTAACAGTGGAAAATCAAATACATGCGGTGCAGTCCACATTACCATTGGTGATGGAGGAAATAGAGAAGGTTTAGCTCAAAGGTATGAGCACCCGTCACCTGAGTGGTCAGTTTTCCGGGAAGCAAGTTTTGGTCACGGTGATCTAGAGATAGTCAATTCAACCCATGCCTTTTGGACCTGGCATAGGAATGATGATGATGAGCCTGTAAGGTCTGATCAGGTATGGATGAACTCCTTGGTCAGTTCGGGATGTGTTGCTGAAAAGAGACATGAGCTGAGGAAGATACTAATGTCACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

287

Amino Acids

32.9

Weight (kDa)

6.05

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	73 - 190	4.9e-06	Calcineurin-like phosphoesterase
Metallophos_C	PF14008	198 - 254	1.2e-20	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20500
fragaria_vesca	FvH4_3g22510 FvH4_3g22510 FvH4_3g22510 FvH4_3g22510
malus_domestica	MD03G1203900.v1.1 MD11G1220800.v1.1
prunus_persica	Prupe.4G211500_v2.0.a1 Prupe.4G211500_v2.0.a1
pyrus_communis	pycom03g15460 pycom11g19470
rosa_chinensis	RchiOBHm_Chr3g0493801 RchiOBHm_Chr5g0039161
rosa_laevigata	RLG00000033899
rosa_multiflora	Rmu_sc0000533.1_g000006 Rmu_sc0002235.1_g000065
rosa_roxburghii	Rroxscaffold_1G00040430 Rroxscaffold_1G00041930 Rroxscaffold_1G00041940
rosa_rugosa	Rorug05G0177100
rosa_samantha	Rh5AG263600 Rh5AG263900 Rh5BG268500 Rh5BG268800 Rh5CG301400 Rh5CG301800 Rh5DG276300 Rh5DG276500
rosa_wichuraiana	Rw5G024650 Rw5G024680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	473
AatII	GACGTC	1 cut(s)	176
Acc36I	ACCTGC	1 cut(s)	473
AccI	GTMKAC	1 cut(s)	512
AciI	CCGC	1 cut(s)	588
AclWI	GGATC	1 cut(s)	454
AcyI	GRCGYC	1 cut(s)	173
AfeI	AGCGCT	1 cut(s)	236
AfiI	CCNNNNNNNGG	2 cut(s)	376, 747
AgsI	TTSAA	5 cut(s)	397, 410, 476, 553, 723
AjnI	CCWGG	3 cut(s)	262, 360, 740
AjuI	GAANNNNNNNTTGG	2 cut(s)	675, 707
AleI	CACNNNNGTG	1 cut(s)	664
AluBI	AGCT	5 cut(s)	13, 319, 453, 638, 838
AluI	AGCT	5 cut(s)	13, 319, 453, 638, 838
Alw21I	GWGCWC	4 cut(s)	138, 455, 490, 654
Alw26I	GTCTC	3 cut(s)	147, 261, 823
Alw44I	GTGCAC	1 cut(s)	134
AlwI	GGATC	1 cut(s)	454
Aor51HI	AGCGCT	1 cut(s)	236
AoxI	GGCC	2 cut(s)	68, 344
ApaLI	GTGCAC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	292
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	738
AsuC2I	CCSGG	1 cut(s)	680
AsuHPI	GGTGA	5 cut(s)	326, 623, 651, 713, 849
AvaII	GGWCC	1 cut(s)	738
BaeGI	GKGCMC	1 cut(s)	138
BaeI	ACNNNNGTAYC	1 cut(s)	839
BanII	GRGCYC	1 cut(s)	455
Bbv12I	GWGCWC	4 cut(s)	138, 455, 490, 654
BbvCI	CCTCAGC	2 cut(s)	72, 839
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	3 cut(s)	198, 395, 608
BciT130I	CCWGG	3 cut(s)	264, 362, 742
BciVI	GTATCC	2 cut(s)	298, 378
BclI	TGATCA	1 cut(s)	778
BcnI	CCSGG	1 cut(s)	680
BcoDI	GTCTC	3 cut(s)	147, 261, 823
BfaI	CTAG	3 cut(s)	221, 423, 707
BfoI	RGCGCY	1 cut(s)	238
BfuAI	ACCTGC	1 cut(s)	473
BfuI	GTATCC	2 cut(s)	298, 378
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
Bme1390I	CCNGG	4 cut(s)	264, 362, 680, 742
Bme18I	GGWCC	1 cut(s)	738
BmgT120I	GGNCC	1 cut(s)	738
BmrFI	CCNGG	4 cut(s)	264, 362, 680, 742
BoxI	GACNNNNGTC	1 cut(s)	176
BpmI	CTGGAG	2 cut(s)	204, 285
Bpu10I	CCTNAGC	2 cut(s)	72, 839
BpuMI	CCSGG	1 cut(s)	680
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	6 cut(s)	98, 296, 347, 360, 361, 798
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 747
Bse1I	ACTGG	2 cut(s)	187, 205
BseBI	CCWGG	3 cut(s)	264, 362, 742
BseDI	CCNNGG	6 cut(s)	98, 296, 347, 360, 361, 798
BseGI	GGATG	5 cut(s)	209, 357, 406, 795, 818
BseLI	CCNNNNNNNGG	2 cut(s)	376, 747
BseMII	CTCAG	3 cut(s)	86, 654, 830
BseNI	ACTGG	2 cut(s)	187, 205
BseSI	GKGCMC	1 cut(s)	138
BseXI	GCAGC	1 cut(s)	304
BsgI	GTGCAG	1 cut(s)	612
BshFI	GGCC	2 cut(s)	70, 346
BsiHKAI	GWGCWC	4 cut(s)	138, 455, 490, 654
BsiSI	CCGG	2 cut(s)	67, 679
BslFI	GGGAC	1 cut(s)	116
BslI	CCNNNNNNNGG	2 cut(s)	376, 747
BsmAI	GTCTC	3 cut(s)	147, 261, 823
BsmFI	GGGAC	1 cut(s)	116
BsnI	GGCC	2 cut(s)	70, 346
Bsp1286I	GDGCHC	4 cut(s)	138, 455, 490, 654
Bsp143I	GATC	4 cut(s)	446, 535, 703, 778
Bsp19I	CCATGG	2 cut(s)	98, 347
BspACI	CCGC	1 cut(s)	588
BspANI	GGCC	2 cut(s)	70, 346
BspCNI	CTCAG	3 cut(s)	85, 655, 831
BspMI	ACCTGC	1 cut(s)	473
BspPI	GGATC	1 cut(s)	454
BsrI	ACTGG	2 cut(s)	187, 205
BssECI	CCNNGG	6 cut(s)	98, 296, 347, 360, 361, 798
BssMI	GATC	4 cut(s)	446, 535, 703, 778
BssNAI	GTATAC	1 cut(s)	513
BssNI	GRCGYC	1 cut(s)	173
BssT1I	CCWWGG	4 cut(s)	98, 296, 347, 798
Bst1107I	GTATAC	1 cut(s)	513
Bst2UI	CCWGG	3 cut(s)	264, 362, 742
Bst4CI	ACNGT	5 cut(s)	34, 46, 560, 569, 701
Bst6I	CTCTTC	1 cut(s)	121
BstACI	GRCGYC	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	3 cut(s)	72, 663, 839
BstDSI	CCRYGG	2 cut(s)	98, 347
BstENI	CCTNNNNNAGG	1 cut(s)	745
BstF5I	GGATG	5 cut(s)	209, 357, 406, 795, 818
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	4 cut(s)	449, 538, 706, 781
BstMAI	GTCTC	3 cut(s)	147, 261, 823
BstMBI	GATC	4 cut(s)	446, 535, 703, 778
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstNI	CCWGG	3 cut(s)	264, 362, 742
BstNSI	RCATGY	1 cut(s)	588
BstPAI	GACNNNNGTC	1 cut(s)	176
BstSCI	CCNGG	4 cut(s)	262, 360, 678, 740
BstSLI	GKGCMC	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	304
BstZ17I	GTATAC	1 cut(s)	513
BsuI	GTATCC	2 cut(s)	298, 378
BsuRI	GGCC	2 cut(s)	70, 346
BtgI	CCRYGG	2 cut(s)	98, 347
BtgZI	GCGATG	1 cut(s)	34
BtsCI	GGATG	5 cut(s)	209, 357, 406, 795, 818
BtsIMutI	CAGTG	2 cut(s)	180, 574
BveI	ACCTGC	1 cut(s)	473
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	738
CseI	GACGC	1 cut(s)	113
CspCI	CAANNNNNGTGG	2 cut(s)	527, 562
CviAII	CATG	8 cut(s)	99, 163, 348, 371, 499, 585, 728, 833
DdeI	CTNAG	3 cut(s)	72, 663, 839
DpnI	GATC	4 cut(s)	448, 537, 705, 780
DpnII	GATC	4 cut(s)	446, 535, 703, 778
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Ecl136II	GAGCTC	1 cut(s)	453
Eco130I	CCWWGG	4 cut(s)	98, 296, 347, 798
Eco24I	GRGCYC	1 cut(s)	455
Eco47I	GGWCC	1 cut(s)	738
Eco47III	AGCGCT	1 cut(s)	236
Eco53kI	GAGCTC	1 cut(s)	453
EcoICRI	GAGCTC	1 cut(s)	453
EcoNI	CCTNNNNNAGG	1 cut(s)	745
EcoRII	CCWGG	3 cut(s)	262, 360, 740
EcoT14I	CCWWGG	4 cut(s)	98, 296, 347, 798
EcoT38I	GRGCYC	1 cut(s)	455
ErhI	CCWWGG	4 cut(s)	98, 296, 347, 798
FaeI	CATG	8 cut(s)	102, 166, 351, 374, 502, 588, 731, 836
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	8 cut(s)	98, 162, 347, 370, 498, 584, 727, 832
FauNDI	CATATG	1 cut(s)	277
FbaI	TGATCA	1 cut(s)	778
FblI	GTMKAC	1 cut(s)	512
Fnu4HI	GCNGC	1 cut(s)	293
FokI	GGATG	5 cut(s)	216, 364, 413, 802, 825
FriOI	GRGCYC	1 cut(s)	455
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	3 cut(s)	221, 423, 707
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	293
GsuI	CTGGAG	2 cut(s)	204, 285
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	2 cut(s)	70, 346
HapII	CCGG	2 cut(s)	67, 679
HgaI	GACGC	1 cut(s)	113
HhaI	GCGC	1 cut(s)	237
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	8 cut(s)	102, 166, 351, 374, 502, 588, 731, 836
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HincII	GTYRAC	2 cut(s)	216, 565
HindII	GTYRAC	2 cut(s)	216, 565
HinfI	GANTC	3 cut(s)	5, 410, 457
HpaI	GTTAAC	1 cut(s)	565
HpaII	CCGG	2 cut(s)	67, 679
HphI	GGTGA	5 cut(s)	326, 623, 651, 713, 849
Hpy166II	GTNNAC	5 cut(s)	136, 216, 513, 565, 598
Hpy188I	TCNGA	2 cut(s)	535, 778
Hpy188III	TCNNGA	3 cut(s)	394, 707, 810
Hpy8I	GTNNAC	5 cut(s)	136, 216, 513, 565, 598
Hpy99I	CGWCG	1 cut(s)	178
HpyAV	CCTTC	4 cut(s)	269, 370, 391, 623
HpyCH4III	ACNGT	5 cut(s)	34, 46, 560, 569, 701
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	5 cut(s)	136, 292, 341, 482, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	3 cut(s)	72, 663, 839
HpySE526I	ACGT	1 cut(s)	173
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	8 cut(s)	102, 166, 351, 374, 502, 588, 731, 836
HspAI	GCGC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	778
KspAI	GTTAAC	1 cut(s)	565
Kzo9I	GATC	4 cut(s)	446, 535, 703, 778
Lsp1109I	GCAGC	1 cut(s)	304
MaeI	CTAG	3 cut(s)	221, 423, 707
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	5 cut(s)	169, 178, 657, 695, 855
MalI	GATC	4 cut(s)	448, 537, 705, 780
MboI	GATC	4 cut(s)	446, 535, 703, 778
MboII	GAAGA	3 cut(s)	108, 565, 856
MhlI	GDGCHC	4 cut(s)	138, 455, 490, 654
MluCI	AATT	3 cut(s)	92, 418, 718
MnlI	CCTC	7 cut(s)	81, 87, 98, 124, 375, 611, 834
MseI	TTAA	1 cut(s)	564
MslI	CAYNNNNRTG	4 cut(s)	32, 167, 664, 750
MspI	CCGG	2 cut(s)	67, 679
MspR9I	CCNGG	4 cut(s)	264, 362, 680, 742
MvaI	CCWGG	3 cut(s)	264, 362, 742
MwoI	GCNNNNNNNGC	1 cut(s)	325
NciI	CCSGG	1 cut(s)	680
NcoI	CCATGG	2 cut(s)	98, 347
NdeI	CATATG	1 cut(s)	277
NdeII	GATC	4 cut(s)	446, 535, 703, 778
NlaIII	CATG	8 cut(s)	102, 166, 351, 374, 502, 588, 731, 836
NmuCI	GTSAC	5 cut(s)	169, 178, 657, 695, 855
NspI	RCATGY	1 cut(s)	588
OliI	CACNNNNGTG	1 cut(s)	664
PaqCI	CACCTGC	1 cut(s)	473
PasI	CCCWGGG	1 cut(s)	361
PfeI	GAWTC	3 cut(s)	5, 410, 457
PflFI	GACNNNGTC	1 cut(s)	211
PfoI	TCCNGGA	2 cut(s)	262, 678
PkrI	GCNGC	1 cut(s)	294
PshAI	GACNNNNGTC	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	455
Psp6I	CCWGG	3 cut(s)	262, 360, 740
PspGI	CCWGG	3 cut(s)	262, 360, 740
PspPI	GGNCC	1 cut(s)	738
PsyI	GACNNNGTC	1 cut(s)	211
RseI	CAYNNNNRTG	4 cut(s)	32, 167, 664, 750
SacI	GAGCTC	1 cut(s)	455
SaqAI	TTAA	1 cut(s)	564
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	4 cut(s)	446, 535, 703, 778
Sau96I	GGNCC	1 cut(s)	738
ScrFI	CCNGG	4 cut(s)	264, 362, 680, 742
SduI	GDGCHC	4 cut(s)	138, 455, 490, 654
SinI	GGWCC	1 cut(s)	738
SmiMI	CAYNNNNRTG	4 cut(s)	32, 167, 664, 750
Sse9I	AATT	3 cut(s)	92, 418, 718
SsiI	CCGC	1 cut(s)	588
SspI	AATATT	1 cut(s)	530
SspMI	CTAG	3 cut(s)	221, 423, 707
SstI	GAGCTC	1 cut(s)	455
StyD4I	CCNGG	4 cut(s)	262, 360, 678, 740
StyI	CCWWGG	4 cut(s)	98, 296, 347, 798
TaaI	ACNGT	5 cut(s)	34, 46, 560, 569, 701
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	449, 455
TaqII	GACCGA	1 cut(s)	166
TasI	AATT	3 cut(s)	92, 418, 718
TfiI	GAWTC	3 cut(s)	5, 410, 457
Tru1I	TTAA	1 cut(s)	564
Tru9I	TTAA	1 cut(s)	564
TscAI	CASTG	2 cut(s)	187, 574
TseFI	GTSAC	5 cut(s)	169, 178, 657, 695, 855
TseI	GCWGC	1 cut(s)	292
Tsp45I	GTSAC	5 cut(s)	169, 178, 657, 695, 855
TspDTI	ATGAA	5 cut(s)	16, 264, 449, 540, 806
TspRI	CASTG	2 cut(s)	187, 574
Tth111I	GACNNNGTC	1 cut(s)	211
VneI	GTGCAC	1 cut(s)	134
VpaK11BI	GGWCC	1 cut(s)	738
XagI	CCTNNNNNAGG	1 cut(s)	745
XbaI	TCTAGA	1 cut(s)	706
XceI	RCATGY	1 cut(s)	588
XcmI	CCANNNNNNNNNTGG	2 cut(s)	260, 605
XmiI	GTMKAC	1 cut(s)	512
XspI	CTAG	3 cut(s)	221, 423, 707
ZraI	GACGTC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.