Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002235.1

Orthogroup ID

OG0005127

Physical Location & Seq

Genomic Coordinates Forward (+)

214721 .. 218872

Gene Structure 4152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002235.1_g000065.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

atgctccaaactcgcctcttcctcttctggctcaacccccgttcagatctaatccccagaaggctacttttcccaaagacaatgattgaaattgatgtaatctttctcgcaaaggcgatgattcgaggcgtggccggaggaggttcgacctggcgtagactcgtggggcgaagggaaggcaaagtgcctcggtgggatacctttggtgagctggttcagccactcgcaagtgcaaggccatggatggtaacccagggaaaccatgagaaggagagcataccattcttgaaggatgggtttgaatcctataattctaggtggaaaatgccgtataaagagagtggatcgagctcgaatctttattactcctttgaagttgcaggtgctcatattatcatgcttggctcgtatactgattatgatgaatattcagatcaatacaagtggttgaaggctgatctatcaaaggtagaccaacaaaagacaccttggttgcttgtgctatttcatgttccctggtataatagtaacaaagctcatcaaggtgaaagggacagcatgatggcagcaatggagccatttctttatgatcatcttcaaatgcgcctatttagaaacccagaggagatcccatggggtcagtttggcgccgatattattgaggagtctactggagtattcactgacaaggacacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0044237

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

232

Amino Acids

27.09

Weight (kDa)

6.53

Isoelectric Point (pI)

50.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005127)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G20500
fragaria_vesca	FvH4_3g22510 FvH4_3g22510 FvH4_3g22510 FvH4_3g22510
malus_domestica	MD03G1203900.v1.1 MD11G1220800.v1.1
prunus_persica	Prupe.4G211500_v2.0.a1 Prupe.4G211500_v2.0.a1
pyrus_communis	pycom03g15460 pycom11g19470
rosa_chinensis	RchiOBHm_Chr3g0493801 RchiOBHm_Chr5g0039161
rosa_laevigata	RLG00000033899
rosa_multiflora	Rmu_sc0000533.1_g000006 Rmu_sc0002235.1_g000065
rosa_roxburghii	Rroxscaffold_1G00040430 Rroxscaffold_1G00041930 Rroxscaffold_1G00041940
rosa_rugosa	Rorug05G0177100
rosa_samantha	Rh5AG263600 Rh5AG263900 Rh5BG268500 Rh5BG268800 Rh5CG301400 Rh5CG301800 Rh5DG276300 Rh5DG276500
rosa_wichuraiana	Rw5G024650 Rw5G024680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	371
Acc36I	ACCTGC	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	647
AccI	GTMKAC	4 cut(s)	157, 410, 471, 668
AclWI	GGATC	2 cut(s)	352, 622
AcoI	YGGCCR	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	648
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	6 cut(s)	89, 289, 302, 374, 451, 599
AjnI	CCWGG	3 cut(s)	149, 252, 515
AluBI	AGCT	3 cut(s)	211, 351, 536
AluI	AGCT	3 cut(s)	211, 351, 536
Alw21I	GWGCWC	2 cut(s)	353, 388
AlwI	GGATC	2 cut(s)	352, 622
AoxI	GGCC	2 cut(s)	132, 236
ApeKI	GCWGC	1 cut(s)	566
AspLEI	GCGC	2 cut(s)	606, 650
AsuHPI	GGTGA	2 cut(s)	218, 557
BanI	GGYRCC	1 cut(s)	647
BanII	GRGCYC	1 cut(s)	353
BauI	CACGAG	1 cut(s)	161
Bbv12I	GWGCWC	2 cut(s)	353, 388
BbvI	GCAGC	1 cut(s)	578
BccI	CCATC	3 cut(s)	238, 287, 556
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	3 cut(s)	151, 254, 517
BciVI	GTATCC	1 cut(s)	190
BclI	TGATCA	1 cut(s)	589
BfaI	CTAG	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	651
BfuAI	ACCTGC	1 cut(s)	371
BfuI	GTATCC	1 cut(s)	190
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	1 cut(s)	567
BlsI	GCNGC	1 cut(s)	568
Bme1390I	CCNGG	3 cut(s)	151, 254, 517
BmiI	GGNNCC	2 cut(s)	576, 649
BmrFI	CCNGG	3 cut(s)	151, 254, 517
BpmI	CTGGAG	1 cut(s)	693
BsaHI	GRCGYC	1 cut(s)	648
BsaJI	CCNNGG	7 cut(s)	188, 239, 252, 253, 488, 515, 632
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	676
Bse3DI	GCAATG	1 cut(s)	576
BseBI	CCWGG	3 cut(s)	151, 254, 517
BseDI	CCNNGG	7 cut(s)	188, 239, 252, 253, 488, 515, 632
BseGI	GGATG	2 cut(s)	249, 298
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMI	GCAATG	1 cut(s)	576
BseNI	ACTGG	1 cut(s)	676
BseRI	GAGGAG	3 cut(s)	153, 638, 677
BseXI	GCAGC	1 cut(s)	578
BshFI	GGCC	2 cut(s)	134, 238
BshNI	GGYRCC	1 cut(s)	647
BsiHKAI	GWGCWC	2 cut(s)	353, 388
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	566
BsnI	GGCC	2 cut(s)	134, 238
Bsp1286I	GDGCHC	2 cut(s)	353, 388
Bsp143I	GATC	6 cut(s)	46, 344, 433, 457, 589, 627
Bsp19I	CCATGG	2 cut(s)	239, 632
BspANI	GGCC	2 cut(s)	134, 238
BspLI	GGNNCC	2 cut(s)	576, 649
BspMI	ACCTGC	1 cut(s)	371
BspPI	GGATC	2 cut(s)	352, 622
BspT107I	GGYRCC	1 cut(s)	647
BsrDI	GCAATG	1 cut(s)	576
BsrI	ACTGG	1 cut(s)	676
BssECI	CCNNGG	7 cut(s)	188, 239, 252, 253, 488, 515, 632
BssMI	GATC	6 cut(s)	46, 344, 433, 457, 589, 627
BssNAI	GTATAC	1 cut(s)	411
BssNI	GRCGYC	1 cut(s)	648
BssSI	CACGAG	1 cut(s)	161
BssT1I	CCWWGG	3 cut(s)	239, 488, 632
Bst1107I	GTATAC	1 cut(s)	411
Bst2BI	CACGAG	1 cut(s)	161
Bst2UI	CCWGG	3 cut(s)	151, 254, 517
Bst6I	CTCTTC	2 cut(s)	23, 29
BstACI	GRCGYC	1 cut(s)	648
BstDSI	CCRYGG	2 cut(s)	239, 632
BstEII	GGTNACC	1 cut(s)	247
BstF5I	GGATG	2 cut(s)	249, 298
BstH2I	RGCGCY	1 cut(s)	651
BstHHI	GCGC	2 cut(s)	606, 650
BstKTI	GATC	6 cut(s)	49, 347, 436, 460, 592, 630
BstMBI	GATC	6 cut(s)	46, 344, 433, 457, 589, 627
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNI	CCWGG	3 cut(s)	151, 254, 517
BstPI	GGTNACC	1 cut(s)	247
BstSCI	CCNGG	3 cut(s)	149, 252, 515
BstV1I	GCAGC	1 cut(s)	578
BstX2I	RGATCY	2 cut(s)	46, 627
BstYI	RGATCY	2 cut(s)	46, 627
BstZ17I	GTATAC	1 cut(s)	411
BsuI	GTATCC	1 cut(s)	190
BsuRI	GGCC	2 cut(s)	134, 238
BtgI	CCRYGG	2 cut(s)	239, 632
BtgZI	GCGATG	1 cut(s)	131
BtsCI	GGATG	2 cut(s)	249, 298
BtsIMutI	CAGTG	1 cut(s)	681
BveI	ACCTGC	1 cut(s)	371
CfoI	GCGC	2 cut(s)	606, 650
CspCI	CAANNNNNGTGG	2 cut(s)	425, 460
CviAII	CATG	6 cut(s)	240, 263, 397, 509, 559, 633
DinI	GGCGCC	1 cut(s)	649
DpnI	GATC	6 cut(s)	48, 346, 435, 459, 591, 629
DpnII	GATC	6 cut(s)	46, 344, 433, 457, 589, 627
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	2 cut(s)	23, 29
EarI	CTCTTC	2 cut(s)	23, 29
Ecl136II	GAGCTC	1 cut(s)	351
Eco130I	CCWWGG	3 cut(s)	239, 488, 632
Eco24I	GRGCYC	1 cut(s)	353
Eco53kI	GAGCTC	1 cut(s)	351
Eco91I	GGTNACC	1 cut(s)	247
EcoICRI	GAGCTC	1 cut(s)	351
EcoO65I	GGTNACC	1 cut(s)	247
EcoRII	CCWGG	3 cut(s)	149, 252, 515
EcoT14I	CCWWGG	3 cut(s)	239, 488, 632
EcoT38I	GRGCYC	1 cut(s)	353
EgeI	GGCGCC	1 cut(s)	649
EheI	GGCGCC	1 cut(s)	649
ErhI	CCWWGG	3 cut(s)	239, 488, 632
FaeI	CATG	6 cut(s)	243, 266, 400, 512, 562, 636
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	6 cut(s)	239, 262, 396, 508, 558, 632
FbaI	TGATCA	1 cut(s)	589
FblI	GTMKAC	4 cut(s)	157, 410, 471, 668
Fnu4HI	GCNGC	1 cut(s)	567
FokI	GGATG	2 cut(s)	256, 305
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	1 cut(s)	567
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	2 cut(s)	605, 649
GluI	GCNGC	1 cut(s)	567
GsuI	CTGGAG	1 cut(s)	693
HaeII	RGCGCY	1 cut(s)	651
HaeIII	GGCC	2 cut(s)	134, 238
HapII	CCGG	1 cut(s)	135
HhaI	GCGC	2 cut(s)	606, 650
Hin1I	GRCGYC	1 cut(s)	648
Hin1II	CATG	6 cut(s)	243, 266, 400, 512, 562, 636
Hin6I	GCGC	2 cut(s)	604, 648
HinP1I	GCGC	2 cut(s)	604, 648
HinfI	GANTC	5 cut(s)	121, 159, 302, 355, 665
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	2 cut(s)	218, 557
Hpy166II	GTNNAC	4 cut(s)	158, 411, 472, 669
Hpy188I	TCNGA	2 cut(s)	46, 433
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	4 cut(s)	158, 411, 472, 669
HpyAV	CCTTC	6 cut(s)	54, 165, 170, 262, 283, 445
HpyCH4V	TGCA	2 cut(s)	233, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
Hsp92I	GRCGYC	1 cut(s)	648
Hsp92II	CATG	6 cut(s)	243, 266, 400, 512, 562, 636
HspAI	GCGC	2 cut(s)	604, 648
KasI	GGCGCC	1 cut(s)	647
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	6 cut(s)	46, 344, 433, 457, 589, 627
LmnI	GCTCC	2 cut(s)	9, 574
Lsp1109I	GCAGC	1 cut(s)	578
MaeI	CTAG	1 cut(s)	315
MaeIII	GTNAC	2 cut(s)	247, 527
MalI	GATC	6 cut(s)	48, 346, 435, 459, 591, 629
MboI	GATC	6 cut(s)	46, 344, 433, 457, 589, 627
MboII	GAAGA	3 cut(s)	10, 16, 587
MflI	RGATCY	2 cut(s)	46, 627
MhlI	GDGCHC	2 cut(s)	353, 388
MluCI	AATT	2 cut(s)	90, 310
Mly113I	GGCGCC	1 cut(s)	648
MlyI	GAGTC	2 cut(s)	153, 674
MnlI	CCTC	8 cut(s)	26, 32, 119, 131, 134, 198, 616, 655
MslI	CAYNNNNRTG	1 cut(s)	543
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	3 cut(s)	151, 254, 517
MvaI	CCWGG	3 cut(s)	151, 254, 517
MwoI	GCNNNNNNNGC	1 cut(s)	217
NarI	GGCGCC	1 cut(s)	648
NcoI	CCATGG	2 cut(s)	239, 632
NdeII	GATC	6 cut(s)	46, 344, 433, 457, 589, 627
NlaIII	CATG	6 cut(s)	243, 266, 400, 512, 562, 636
NlaIV	GGNNCC	2 cut(s)	576, 649
PaqCI	CACCTGC	1 cut(s)	371
PasI	CCCWGGG	1 cut(s)	253
PfeI	GAWTC	3 cut(s)	121, 302, 355
PkrI	GCNGC	1 cut(s)	568
PleI	GAGTC	2 cut(s)	153, 673
PluTI	GGCGCC	1 cut(s)	651
PpsI	GAGTC	2 cut(s)	153, 673
Psp124BI	GAGCTC	1 cut(s)	353
Psp6I	CCWGG	3 cut(s)	149, 252, 515
PspEI	GGTNACC	1 cut(s)	247
PspGI	CCWGG	3 cut(s)	149, 252, 515
PspN4I	GGNNCC	2 cut(s)	576, 649
PsuI	RGATCY	2 cut(s)	46, 627
RseI	CAYNNNNRTG	1 cut(s)	543
SacI	GAGCTC	1 cut(s)	353
SatI	GCNGC	1 cut(s)	567
Sau3AI	GATC	6 cut(s)	46, 344, 433, 457, 589, 627
SchI	GAGTC	2 cut(s)	153, 674
ScrFI	CCNGG	3 cut(s)	151, 254, 517
SduI	GDGCHC	2 cut(s)	353, 388
SfoI	GGCGCC	1 cut(s)	649
SmiMI	CAYNNNNRTG	1 cut(s)	543
Sse9I	AATT	2 cut(s)	90, 310
SspDI	GGCGCC	1 cut(s)	647
SspI	AATATT	1 cut(s)	428
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	353
StyD4I	CCNGG	3 cut(s)	149, 252, 515
StyI	CCWWGG	3 cut(s)	239, 488, 632
TaqI	TCGA	4 cut(s)	124, 146, 347, 353
TasI	AATT	2 cut(s)	90, 310
TfiI	GAWTC	3 cut(s)	121, 302, 355
TscAI	CASTG	1 cut(s)	688
TseI	GCWGC	1 cut(s)	566
TspDTI	ATGAA	2 cut(s)	438, 497
TspRI	CASTG	1 cut(s)	688
XmiI	GTMKAC	4 cut(s)	157, 410, 471, 668
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.