Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004136

Physical Location & Seq

Genomic Coordinates Forward (+)

5776457 .. 5778478

Gene Structure 2022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCAGTGGCAATGATTTCTATTTCCTTGACCCAAGATTATTGCTCTTTCAAATGGGGGTTGCCAAATGGTTTTCTGCGGAAACAAATTCTTACAGAAACCTCCACTACTGCCAAACTCAAGTTTTCATGCCCTCCAACTCTTGAAGCCAGCTTTAAGAAAACAGCAATTTATGTTTTATCTCCCAACAAATCTTCACCAAGCGTGATGATGCCAGAGTTACTTGACGGATGGAACGACGAATATGGTGGAGTCATAATTAATCCAGAGAGCTTACCCATGAGTGCAAATGCTTTTGCATCTGCTGTTCAGGCTTCTCTGTTCAACTGGAAAATGAAGGGGAAAAAGGGGGTATGGCTCAAAATACTAAAAGAGCAAGCTGATCTTGTCCCAATTGCAATTCAGGAGGGTTTCAACTTTCACCATGCTCAACCAGGATATGTTATGCTAACATACTGGATTCCAAGTGGGCCTTGTATGCTTCCCGATAGCCCTTCACATCATATTGGTATTGGAGCTTTTGTGATCAATGACAAAAGAGAGTGTCCTTGTAGCTGCTCTGGTGTGTGGAAATTACCAACTGGTTATATCAACAAGTCTGAAGATATATTCTCTGGTGCTATAAGAGAAGTGAAAGAAGAAACTGGGATTGAGACAACTTTCCTTAAAATGGTAGCTTTCAGACATGCACACAAGGTTGCATTTGAGCAGTCGGACTTGCTGTTTGTGTGCATGCTTAAGCCTTTGTCATCTGAGATCATAATTGATGAGAAGGAAATCCAATCTGCAAAGTGGATGGCTCTTGATGAGTTTATTGAGCAGCCATATTATGAAGATGACCACTTGTCAAATAAGATCATTGACATATGCATTGCGGCTCATGAAGACAACTACAGTGGATTCACTGGTCATCAGCTCAACTCCAAACTTGATGGAAGATTATCCTATCTGTATTGTAACCATGTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0008150 GO:0009611 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUDIX

Protein Analysis

323

Amino Acids

36.22

Weight (kDa)

5.81

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nudix_hydro	PF18290	75 - 154	3.5e-30	Nudix hydrolase domain
NUDIX	PF00293	170 - 274	5.1e-14	NUDIX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47240 AT5G47240
fragaria_vesca	FvH4_1g06560 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780 FvH4_5g19780
malus_domestica	MD04G1058500.v1.1 MD15G1200400.v1.1
prunus_persica	Prupe.5G062300_v2.0.a1 Prupe.7G216800_v2.0.a1
pyrus_communis	pycom04g05240
rosa_chinensis	RchiOBHm_Chr2g0092301 RchiOBHm_Chr7g0204561
rosa_laevigata	RLG00000003449 RLG00000016295
rosa_multiflora	Rmu_sc0014894.1_g000001 Rmu_ssc0000443.1_g000036
rosa_roxburghii	Rroxscaffold_2G00149280 Rroxscaffold_3G00252990
rosa_rugosa	Rorug02G0024700 Rorug07G0085200
rosa_samantha	Rh2AG070500 Rh2BG070000 Rh2CG071200 Rh2DG069000 Rh7AG214500 Rh7BG212000 Rh7CG227600 Rh7DG222200
rosa_wichuraiana	Rw2G006180 Rw7G018610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	79, 875
AcsI	RAATTY	1 cut(s)	87
AcuI	CTGAAG	1 cut(s)	621
AfiI	CCNNNNNNNGG	1 cut(s)	670
AflII	CTTAAG	1 cut(s)	737
AgsI	TTSAA	4 cut(s)	52, 146, 325, 415
AhdI	GACNNNNNGTC	1 cut(s)	844
AjnI	CCWGG	1 cut(s)	433
AluBI	AGCT	7 cut(s)	153, 273, 380, 518, 555, 677, 916
AluI	AGCT	7 cut(s)	153, 273, 380, 518, 555, 677, 916
Alw26I	GTCTC	1 cut(s)	647
AoxI	GGCC	1 cut(s)	470
ApeKI	GCWGC	2 cut(s)	555, 820
ApoI	RAATTY	1 cut(s)	87
ArsI	GACNNNNNNTTYG	2 cut(s)	707, 739
AseI	ATTAAT	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	2 cut(s)	189, 413
BbsI	GAAGAC	1 cut(s)	891
BbvI	GCAGC	2 cut(s)	542, 832
BccI	CCATC	3 cut(s)	225, 790, 926
BciT130I	CCWGG	1 cut(s)	435
BclI	TGATCA	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	647
BfmI	CTRYAG	1 cut(s)	892
BfrI	CTTAAG	1 cut(s)	737
BisI	GCNGC	3 cut(s)	556, 821, 876
BlsI	GCNGC	3 cut(s)	557, 822, 877
Bme1390I	CCNGG	1 cut(s)	435
BmeRI	GACNNNNNGTC	1 cut(s)	844
BmgT120I	GGNCC	1 cut(s)	470
BmrFI	CCNGG	1 cut(s)	435
BmrI	ACTGGG	1 cut(s)	654
BmsI	GCATC	2 cut(s)	201, 308
BmuI	ACTGGG	1 cut(s)	654
BpiI	GAAGAC	1 cut(s)	891
BpuEI	CTTGAG	1 cut(s)	104
BsaXI	ACNNNNNCTCC	2 cut(s)	507, 537
Bsc4I	CCNNNNNNNGG	1 cut(s)	670
Bse1I	ACTGG	5 cut(s)	332, 461, 586, 649, 910
Bse3DI	GCAATG	2 cut(s)	18, 870
BseBI	CCWGG	1 cut(s)	435
BseGI	GGATG	2 cut(s)	236, 801
BseLI	CCNNNNNNNGG	1 cut(s)	670
BseMI	GCAATG	2 cut(s)	18, 870
BseMII	CTCAG	1 cut(s)	744
BseNI	ACTGG	5 cut(s)	332, 461, 586, 649, 910
BseXI	GCAGC	2 cut(s)	542, 832
BshFI	GGCC	1 cut(s)	472
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	1 cut(s)	670
BsmAI	GTCTC	1 cut(s)	647
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	472
Bsp143I	GATC	4 cut(s)	382, 525, 756, 855
BspACI	CCGC	2 cut(s)	79, 875
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	1 cut(s)	745
BspHI	TCATGA	1 cut(s)	880
BspTI	CTTAAG	1 cut(s)	737
BsrDI	GCAATG	2 cut(s)	18, 870
BsrI	ACTGG	5 cut(s)	332, 461, 586, 649, 910
BssMI	GATC	4 cut(s)	382, 525, 756, 855
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	896
BstAFI	CTTAAG	1 cut(s)	737
BstC8I	GCNNGC	3 cut(s)	151, 378, 734
BstDEI	CTNAG	1 cut(s)	753
BstF5I	GGATG	2 cut(s)	236, 801
BstKTI	GATC	4 cut(s)	385, 528, 759, 858
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	4 cut(s)	382, 525, 756, 855
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 478
BstNI	CCWGG	1 cut(s)	435
BstNSI	RCATGY	2 cut(s)	689, 736
BstSCI	CCNGG	1 cut(s)	433
BstSFI	CTRYAG	1 cut(s)	892
BstV1I	GCAGC	2 cut(s)	542, 832
BstV2I	GAAGAC	1 cut(s)	891
BsuRI	GGCC	1 cut(s)	472
BtsCI	GGATG	2 cut(s)	236, 801
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	3 cut(s)	12, 901, 903
Cac8I	GCNNGC	3 cut(s)	151, 378, 734
CciI	TCATGA	1 cut(s)	880
Cfr13I	GGNCC	1 cut(s)	470
CspCI	CAANNNNNGTGG	2 cut(s)	877, 912
CviAII	CATG	7 cut(s)	129, 280, 425, 686, 733, 881, 962
DdeI	CTNAG	1 cut(s)	753
DpnI	GATC	4 cut(s)	384, 527, 758, 857
DpnII	GATC	4 cut(s)	382, 525, 756, 855
DriI	GACNNNNNGTC	1 cut(s)	844
Eam1105I	GACNNNNNGTC	1 cut(s)	844
Eco57I	CTGAAG	1 cut(s)	621
EcoRII	CCWGG	1 cut(s)	433
EcoT22I	ATGCAT	1 cut(s)	872
FaeI	CATG	7 cut(s)	132, 283, 428, 689, 736, 884, 965
FalI	AAGNNNNNCTT	4 cut(s)	369, 401, 457, 489
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	7 cut(s)	128, 279, 424, 685, 732, 880, 961
FauNDI	CATATG	1 cut(s)	866
FbaI	TGATCA	1 cut(s)	525
Fnu4HI	GCNGC	3 cut(s)	556, 821, 876
FokI	GGATG	2 cut(s)	243, 808
Fsp4HI	GCNGC	3 cut(s)	556, 821, 876
GluI	GCNGC	3 cut(s)	556, 821, 876
HaeIII	GGCC	1 cut(s)	472
Hin1II	CATG	7 cut(s)	132, 283, 428, 689, 736, 884, 965
HinfI	GANTC	3 cut(s)	252, 460, 900
HphI	GGTGA	2 cut(s)	189, 413
Hpy188I	TCNGA	4 cut(s)	601, 683, 715, 754
Hpy188III	TCNNGA	6 cut(s)	143, 266, 404, 485, 803, 881
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	3 cut(s)	331, 504, 766
HpyCH4III	ACNGT	1 cut(s)	896
HpyCH4V	TGCA	8 cut(s)	287, 299, 398, 689, 701, 732, 788, 870
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 478
HpyF3I	CTNAG	1 cut(s)	753
Hsp92II	CATG	7 cut(s)	132, 283, 428, 689, 736, 884, 965
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	4 cut(s)	382, 525, 756, 855
LmnI	GCTCC	1 cut(s)	515
Lsp1109I	GCAGC	2 cut(s)	542, 832
LweI	GCATC	2 cut(s)	201, 308
MaeIII	GTNAC	2 cut(s)	219, 956
MalI	GATC	4 cut(s)	384, 527, 758, 857
MboI	GATC	4 cut(s)	382, 525, 756, 855
MboII	GAAGA	6 cut(s)	186, 614, 650, 845, 896, 948
MfeI	CAATTG	1 cut(s)	393
MluCI	AATT	8 cut(s)	87, 168, 258, 393, 399, 572, 762, 967
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	2 cut(s)	161, 693
MnlI	CCTC	3 cut(s)	112, 144, 400
Mph1103I	ATGCAT	1 cut(s)	872
MseI	TTAA	4 cut(s)	156, 261, 666, 738
MspCI	CTTAAG	1 cut(s)	737
MspR9I	CCNGG	1 cut(s)	435
MunI	CAATTG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	2 cut(s)	311, 478
NdeI	CATATG	1 cut(s)	866
NdeII	GATC	4 cut(s)	382, 525, 756, 855
NlaIII	CATG	7 cut(s)	132, 283, 428, 689, 736, 884, 965
NsiI	ATGCAT	1 cut(s)	872
NspI	RCATGY	2 cut(s)	689, 736
PaeI	GCATGC	1 cut(s)	736
PagI	TCATGA	1 cut(s)	880
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	460, 900
PkrI	GCNGC	3 cut(s)	557, 822, 877
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	433
PspPI	GGNCC	1 cut(s)	470
SaqAI	TTAA	4 cut(s)	156, 261, 666, 738
SatI	GCNGC	3 cut(s)	556, 821, 876
Sau3AI	GATC	4 cut(s)	382, 525, 756, 855
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	1 cut(s)	435
SetI	ASST	9 cut(s)	104, 155, 275, 382, 520, 557, 679, 699, 918
SfaNI	GCATC	2 cut(s)	201, 308
SfcI	CTRYAG	1 cut(s)	892
SmlI	CTYRAG	2 cut(s)	119, 737
SmoI	CTYRAG	2 cut(s)	119, 737
SphI	GCATGC	1 cut(s)	736
Sse9I	AATT	8 cut(s)	87, 168, 258, 393, 399, 572, 762, 967
SsiI	CCGC	2 cut(s)	79, 875
StyD4I	CCNGG	1 cut(s)	433
TaaI	ACNGT	1 cut(s)	896
TasI	AATT	8 cut(s)	87, 168, 258, 393, 399, 572, 762, 967
TauI	GCSGC	1 cut(s)	878
TfiI	GAWTC	2 cut(s)	460, 900
Tru1I	TTAA	4 cut(s)	156, 261, 666, 738
Tru9I	TTAA	4 cut(s)	156, 261, 666, 738
TscAI	CASTG	3 cut(s)	12, 901, 910
TseI	GCWGC	2 cut(s)	555, 820
TspDTI	ATGAA	4 cut(s)	117, 350, 846, 897
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	3 cut(s)	12, 901, 910
Vha464I	CTTAAG	1 cut(s)	737
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	1 cut(s)	87
XceI	RCATGY	2 cut(s)	689, 736
Zsp2I	ATGCAT	1 cut(s)	872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.