Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008890

Physical Location & Seq

Genomic Coordinates Reverse (-)

9083461 .. 9084465

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCTCTCATTGTTTCAGAGAAACCTCTTGACATAGGAATGTCGGTCATCACCATCATGCTCGGGACTTGGCAGTATATATGTATGGCGTTGGGGAGCCAGGGCACAATCGGGGGTGGTTATCCAAATCGGGGGTTTGAATATGCAGCGGAGCACGCAATCAACCGGGAGAACAGTTACCCAATCATCGGTAGGAACCAACCATGCAAAGGCAAATTGGAAAGAAATCCTTATGTGCAGATAAGTGGTTACATGAACATACCACCAAATAATGAAAAATATTGTATTTTTGTGGCTGAACAACCGACTGTAGCCGGAATGGAGGTCACCGAGACATTTTACATTGATTACAAATATGGTATCTACACCGATAAAAATAGAGAATGTGGAATATTACCGATGGATAATCGTACCTACCATGCTGTTACAATCGTAGGGAATAGGACAGAAGATGACACAAACAACTGGTTAGTGAAGAATTCTTTGGGGCTCGGACTGGGGGTGAAGATGGATATTTCCGAATTCAAAGAAATGTGGATGAGCCAAGTGGTATTTGCGAGATTGCAGGATGGCCTTCCTAACCATAAATCAGTCATTAATTACTATATTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

204

Amino Acids

23.09

Weight (kDa)

5.64

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	38 - 163	1.8e-17	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008890)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G113800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0096291 RchiOBHm_Chr6g0264751 RchiOBHm_Chr6g0275001
rosa_laevigata	RLG00000002574 RLG00000016632
rosa_multiflora	Rmu_co8275375.1_g000001 Rmu_co8431381.1_g000001 Rmu_sc0000692.1_g000006 Rmu_sc0005996.1_g000021
rosa_roxburghii	Rroxscaffold_3G00243270
rosa_rugosa	Rorug02G0057500
rosa_samantha	Rh2AG104300 Rh2BG106400 Rh2CG108300 Rh2DG107100 Rh7AG298500 Rh7AG298900 Rh7BG289400 Rh7BG290600 Rh7CG318400 Rh7DG300400
rosa_wichuraiana	Rw7G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	149
AcsI	RAATTY	2 cut(s)	478, 521
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	3 cut(s)	131, 188, 209
AgsI	TTSAA	2 cut(s)	140, 526
AjnI	CCWGG	1 cut(s)	99
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	326
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	1 cut(s)	571
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	2 cut(s)	478, 521
AseI	ATTAAT	1 cut(s)	597
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	3 cut(s)	43, 319, 514
AvaI	CYCGRG	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	4 cut(s)	62, 394, 502, 563
BciT130I	CCWGG	1 cut(s)	101
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	326
BfaI	CTAG	1 cut(s)	613
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	101, 167
BmeT110I	CYCGRG	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	98, 197
BmrFI	CCNGG	2 cut(s)	101, 167
BmrI	ACTGGG	1 cut(s)	506
BmuI	ACTGGG	1 cut(s)	506
BpuMI	CCSGG	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 188, 209
Bse1I	ACTGG	2 cut(s)	470, 501
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	2 cut(s)	543, 574
BseLI	CCNNNNNNNGG	3 cut(s)	131, 188, 209
BseNI	ACTGG	2 cut(s)	470, 501
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	257
BshFI	GGCC	1 cut(s)	573
BsiHKAI	GWGCWC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	166, 315
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	3 cut(s)	131, 188, 209
BsmAI	GTCTC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	573
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	3 cut(s)	107, 156, 492
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	1 cut(s)	573
BspLI	GGNNCC	2 cut(s)	98, 197
BsrI	ACTGG	2 cut(s)	470, 501
BssECI	CCNNGG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	2 cut(s)	176, 310
BstC8I	GCNNGC	1 cut(s)	156
BstEII	GGTNACC	1 cut(s)	325
BstF5I	GGATG	2 cut(s)	543, 574
BstMAI	GTCTC	1 cut(s)	326
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	101
BstPI	GGTNACC	1 cut(s)	325
BstSCI	CCNGG	2 cut(s)	99, 165
BstSFI	CTRYAG	1 cut(s)	309
BstSLI	GKGCMC	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	158
BsuRI	GGCC	1 cut(s)	573
BtsCI	GGATG	2 cut(s)	543, 574
Cac8I	GCNNGC	1 cut(s)	156
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	4 cut(s)	58, 204, 253, 419
CviJI	RGCY	7 cut(s)	5, 99, 296, 314, 490, 543, 573
CviKI_1	RGCY	7 cut(s)	5, 99, 296, 314, 490, 543, 573
CviQI	GTAC	1 cut(s)	411
Eco24I	GRGCYC	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	62
Eco91I	GGTNACC	1 cut(s)	325
EcoO65I	GGTNACC	1 cut(s)	325
EcoRI	GAATTC	2 cut(s)	478, 521
EcoRII	CCWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	492
FaeI	CATG	4 cut(s)	61, 207, 256, 422
FalI	AAGNNNNNCTT	2 cut(s)	214, 246
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	4 cut(s)	57, 203, 252, 418
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	2 cut(s)	550, 581
FriOI	GRGCYC	1 cut(s)	492
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	613
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	573
HapII	CCGG	2 cut(s)	166, 315
Hin1II	CATG	4 cut(s)	61, 207, 256, 422
HpaII	CCGG	2 cut(s)	166, 315
HphI	GGTGA	3 cut(s)	43, 319, 514
Hpy188I	TCNGA	3 cut(s)	19, 494, 520
Hpy188III	TCNNGA	2 cut(s)	29, 64
HpyAV	CCTTC	1 cut(s)	584
HpyCH4III	ACNGT	2 cut(s)	176, 310
HpyCH4V	TGCA	4 cut(s)	146, 207, 238, 565
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
Hsp92II	CATG	4 cut(s)	61, 207, 256, 422
LmnI	GCTCC	2 cut(s)	96, 151
LpnPI	CCDG	7 cut(s)	86, 113, 179, 328, 451, 482, 551
Lsp1109I	GCAGC	1 cut(s)	158
MaeI	CTAG	1 cut(s)	613
MaeIII	GTNAC	4 cut(s)	176, 248, 325, 424
MboII	GAAGA	3 cut(s)	461, 487, 517
MhlI	GDGCHC	3 cut(s)	107, 156, 492
MluCI	AATT	4 cut(s)	215, 478, 521, 598
MnlI	CCTC	2 cut(s)	36, 316
MseI	TTAA	1 cut(s)	597
MslI	CAYNNNNRTG	2 cut(s)	38, 56
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	2 cut(s)	166, 315
MspR9I	CCNGG	2 cut(s)	101, 167
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	1 cut(s)	155
NciI	CCSGG	1 cut(s)	167
NlaIII	CATG	4 cut(s)	61, 207, 256, 422
NlaIV	GGNNCC	2 cut(s)	98, 197
NmuCI	GTSAC	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	148
PshBI	ATTAAT	1 cut(s)	597
Psp6I	CCWGG	1 cut(s)	99
PspEI	GGTNACC	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	98, 197
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
RseI	CAYNNNNRTG	2 cut(s)	38, 56
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	1 cut(s)	147
ScrFI	CCNGG	2 cut(s)	101, 167
SduI	GDGCHC	3 cut(s)	107, 156, 492
SetI	ASST	3 cut(s)	28, 327, 416
SfcI	CTRYAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	2 cut(s)	38, 56
Sse9I	AATT	4 cut(s)	215, 478, 521, 598
SsiI	CCGC	1 cut(s)	149
SspI	AATATT	2 cut(s)	281, 393
SspMI	CTAG	1 cut(s)	613
StyD4I	CCNGG	2 cut(s)	99, 165
TaaI	ACNGT	2 cut(s)	176, 310
TaqII	GACCGA	1 cut(s)	34
TasI	AATT	4 cut(s)	215, 478, 521, 598
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	2 cut(s)	269, 288
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	2 cut(s)	478, 521
XspI	CTAG	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.