Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008890

Physical Location & Seq

Genomic Coordinates Reverse (-)

36528331 .. 36528711

Gene Structure 381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002574

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCTATTGTTCAAAATAAAATAGTAATGTTGGTCATCACCATCATGCTCGGGACTTTGGCAATTACATCAGACCAAGTACTACCATCTGAAAAATACAAGAAATCCACGATCAATATTACGCAAAAGTTTGAAGAGTGGATGGTCGAGCATAATCGTGTCTACTCCAATAATTCAGAAAAGGAGAAGCGTTACGAAATATTCAAGAAAAACTATGAGCAAATGCGAGCCAAATATAATAATAATGAACCTGAGCTGAACATATTTGGTGATAAAACCGATGATGAACTCCCCAAAGGTGGCATGAAAATACCGAAGATTCCTTACTGTTCTTTGTTTCATTATTTTGTTCCTGAATACAAAATTTCGGTGGAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

127

Amino Acids

14.89

Weight (kDa)

7.76

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	44 - 97	2.2e-10	Cathepsin propeptide inhibitor domain (I29)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0008890)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G113800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0096291 RchiOBHm_Chr6g0264751 RchiOBHm_Chr6g0275001
rosa_laevigata	RLG00000002574 RLG00000016632
rosa_multiflora	Rmu_co8275375.1_g000001 Rmu_co8431381.1_g000001 Rmu_sc0000692.1_g000006 Rmu_sc0005996.1_g000021
rosa_roxburghii	Rroxscaffold_3G00243270
rosa_rugosa	Rorug02G0057500
rosa_samantha	Rh2AG104300 Rh2BG106400 Rh2CG108300 Rh2DG107100 Rh7AG298500 Rh7AG298900 Rh7BG289400 Rh7BG290600 Rh7CG318400 Rh7DG300400
rosa_wichuraiana	Rw7G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	363
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	3 cut(s)	14, 134, 205
AluBI	AGCT	2 cut(s)	256, 376
AluI	AGCT	2 cut(s)	256, 376
Ama87I	CYCGRG	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	363
AsuHPI	GGTGA	2 cut(s)	31, 281
AvaI	CYCGRG	1 cut(s)	50
BarI	GAAGNNNNNNTAC	2 cut(s)	308, 340
BccI	CCATC	3 cut(s)	50, 94, 136
BmcAI	AGTACT	1 cut(s)	81
BmeT110I	CYCGRG	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	50
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	67
BsoBI	CYCGRG	1 cut(s)	50
Bsp143I	GATC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	244
BssMI	GATC	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	2 cut(s)	46, 304
CviJI	RGCY	4 cut(s)	5, 230, 256, 376
CviKI_1	RGCY	4 cut(s)	5, 230, 256, 376
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	50
FaeI	CATG	2 cut(s)	49, 307
FaiI	YATR	6 cut(s)	47, 153, 216, 237, 263, 305
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	2 cut(s)	45, 303
FblI	GTMKAC	1 cut(s)	162
FokI	GGATG	1 cut(s)	154
Hin1II	CATG	2 cut(s)	49, 307
HinfI	GANTC	1 cut(s)	319
HphI	GGTGA	2 cut(s)	31, 281
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	3 cut(s)	73, 91, 178
Hpy188III	TCNNGA	3 cut(s)	52, 205, 353
Hpy8I	GTNNAC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	329
HpyF3I	CTNAG	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	49, 307
Kzo9I	GATC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	2 cut(s)	264, 366
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	2 cut(s)	146, 328
MluCI	AATT	3 cut(s)	63, 172, 363
MslI	CAYNNNNRTG	2 cut(s)	44, 156
NdeII	GATC	1 cut(s)	111
NlaIII	CATG	2 cut(s)	49, 307
PfeI	GAWTC	1 cut(s)	319
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
RseI	CAYNNNNRTG	2 cut(s)	44, 156
Sau3AI	GATC	1 cut(s)	111
ScaI	AGTACT	1 cut(s)	81
SetI	ASST	4 cut(s)	253, 258, 301, 378
SmiMI	CAYNNNNRTG	2 cut(s)	44, 156
Sse9I	AATT	3 cut(s)	63, 172, 363
SspI	AATATT	2 cut(s)	118, 201
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	1 cut(s)	147
TasI	AATT	3 cut(s)	63, 172, 363
TatI	WGTACW	1 cut(s)	79
TfiI	GAWTC	1 cut(s)	319
TspDTI	ATGAA	4 cut(s)	261, 300, 320, 329
XapI	RAATTY	1 cut(s)	363
XmiI	GTMKAC	1 cut(s)	162
ZrmI	AGTACT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.