Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008890

Physical Location & Seq

Genomic Coordinates Reverse (-)

8404642 .. 8405061

Gene Structure 420 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016632

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCGTTGGGGAGCCAGGGCACAATCGGGGGTGGTTATCCAAATCGGGGGTTTGAATATGCAGCGGAGCACGCAATCAACCGGGAGAACAGTTACCCAATCATCGGTAGGAACCAACCATGCAAAGGCAAATTGGAAAGAAATCCTTATGTGCAGATAAGTGGTTACATGAACATACCACCAAATAATGAAAAATATTGTATTTTTGTGGCTGAACAACCGACTGTAGCCGGAATGGAGGTCACCGAGACATTTTACATTGATTACAAATATGGTATCTACACCGATAAAAATAGAGAATGTGGAATATTACCAATGGATAACCGTACCTACCATGCTGTTACAATCGTAGGGAATAGGACAGAAGATGACACAAACTACTTGTTAGTGAAGAATTCTTTGGGGCTCGGACTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

140

Amino Acids

15.54

Weight (kDa)

5.67

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	10 - 134	2.9e-17	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008890)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G113800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0096291 RchiOBHm_Chr6g0264751 RchiOBHm_Chr6g0275001
rosa_laevigata	RLG00000002574 RLG00000016632
rosa_multiflora	Rmu_co8275375.1_g000001 Rmu_co8431381.1_g000001 Rmu_sc0000692.1_g000006 Rmu_sc0005996.1_g000021
rosa_roxburghii	Rroxscaffold_3G00243270
rosa_rugosa	Rorug02G0057500
rosa_samantha	Rh2AG104300 Rh2BG106400 Rh2CG108300 Rh2DG107100 Rh7AG298500 Rh7AG298900 Rh7BG289400 Rh7BG290600 Rh7CG318400 Rh7DG300400
rosa_wichuraiana	Rw7G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	394
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	3 cut(s)	47, 104, 125
AgsI	TTSAA	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	15
AjuI	GAANNNNNNNTTGG	2 cut(s)	383, 415
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	1 cut(s)	242
ApeKI	GCWGC	1 cut(s)	62
ApoI	RAATTY	1 cut(s)	394
AsuC2I	CCSGG	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	17
BcnI	CCSGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	225
BisI	GCNGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	64
Bme1390I	CCNGG	2 cut(s)	17, 83
BmiI	GGNNCC	2 cut(s)	14, 113
BmrFI	CCNGG	2 cut(s)	17, 83
BpuMI	CCSGG	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 104, 125
Bse1I	ACTGG	1 cut(s)	417
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	16
BseLI	CCNNNNNNNGG	3 cut(s)	47, 104, 125
BseNI	ACTGG	1 cut(s)	417
BseSI	GKGCMC	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	82, 231
BslI	CCNNNNNNNGG	3 cut(s)	47, 104, 125
BsmAI	GTCTC	1 cut(s)	242
Bsp1286I	GDGCHC	3 cut(s)	23, 72, 408
BspACI	CCGC	1 cut(s)	65
BspLI	GGNNCC	2 cut(s)	14, 113
BsrI	ACTGG	1 cut(s)	417
BssECI	CCNNGG	1 cut(s)	16
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	3 cut(s)	92, 226, 326
BstC8I	GCNNGC	1 cut(s)	72
BstEII	GGTNACC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	242
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNI	CCWGG	1 cut(s)	17
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	2 cut(s)	15, 81
BstSFI	CTRYAG	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	3 cut(s)	120, 169, 335
CviJI	RGCY	4 cut(s)	15, 212, 230, 406
CviKI_1	RGCY	4 cut(s)	15, 212, 230, 406
CviQI	GTAC	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	408
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	15
EcoT38I	GRGCYC	1 cut(s)	408
FaeI	CATG	3 cut(s)	123, 172, 338
FaiI	YATR	7 cut(s)	60, 121, 150, 170, 176, 273, 336
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FatI	CATG	3 cut(s)	119, 168, 334
Fnu4HI	GCNGC	1 cut(s)	63
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	63
HapII	CCGG	2 cut(s)	82, 231
Hin1II	CATG	3 cut(s)	123, 172, 338
HpaII	CCGG	2 cut(s)	82, 231
HphI	GGTGA	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	410
HpyCH4III	ACNGT	3 cut(s)	92, 226, 326
HpyCH4V	TGCA	3 cut(s)	62, 123, 154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
Hsp92II	CATG	3 cut(s)	123, 172, 338
LmnI	GCTCC	2 cut(s)	12, 67
LpnPI	CCDG	5 cut(s)	2, 29, 95, 244, 398
Lsp1109I	GCAGC	1 cut(s)	74
MaeIII	GTNAC	4 cut(s)	92, 164, 241, 340
MboII	GAAGA	2 cut(s)	377, 403
MhlI	GDGCHC	3 cut(s)	23, 72, 408
MluCI	AATT	2 cut(s)	131, 394
MnlI	CCTC	1 cut(s)	232
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	2 cut(s)	82, 231
MspR9I	CCNGG	2 cut(s)	17, 83
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	71
NciI	CCSGG	1 cut(s)	83
NlaIII	CATG	3 cut(s)	123, 172, 338
NlaIV	GGNNCC	2 cut(s)	14, 113
NmuCI	GTSAC	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	64
Psp6I	CCWGG	1 cut(s)	15
PspEI	GGTNACC	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	14, 113
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
SatI	GCNGC	1 cut(s)	63
ScrFI	CCNGG	2 cut(s)	17, 83
SduI	GDGCHC	3 cut(s)	23, 72, 408
SetI	ASST	2 cut(s)	243, 332
SfcI	CTRYAG	1 cut(s)	225
Sse9I	AATT	2 cut(s)	131, 394
SsiI	CCGC	1 cut(s)	65
SspI	AATATT	2 cut(s)	197, 309
StyD4I	CCNGG	2 cut(s)	15, 81
TaaI	ACNGT	3 cut(s)	92, 226, 326
TasI	AATT	2 cut(s)	131, 394
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	185, 204
XapI	RAATTY	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.