Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008890

Physical Location & Seq

Genomic Coordinates Reverse (-)

31731760 .. 31733012

Gene Structure 1253 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G025390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTATTGTACCCTTCACCTTCTCTTCTCTCTTGTTCATCACCATCATGCTTGGAACTATGGCAACCGCATCATCCCACATTACGCAAAAGTTTGAAGAGTGGATGGTAAAGCATAACCGCGTCTACTCCAATAATTCAGAAAAGGAGAGGCGATACAAAATTTTCAAGGAAAACTTTAAGCAAAGGCGAGCCAGGTATAACACTAAACCTAAGCTGAATATATTTGGTGATCACACTGATGATGAACTCCCCAAAGGCTGCGTGAGACTACCCTTAGAACCACTGGAGATTTCCTACAATCCTACTTTCTTTGATGAATTTGCTCCTGACTACAAAAATTGGGCATATGAAGGAGCTGTCACTGAAGTTAGAGACCAGCGGGGCGATACTTGTTGGGCTTTTACAGCAGCAGCAGCAATCGAAGGAATTGTAAAAATTAAAAAAGGCGAATTAGTTACATTGTCTCCTCAACAAATTGTAGACTGTACTCTGGCCCGAGAAAAGTATAGAGAGCACTACGGACTCAAGGGCACAATTGGCAGTGAGATCACTTATCCATTCATCGGGCGGGACCAACCATGCAACGCCAAATTGGAAAGATATCCTTATACAAAGATAAGTGGTTACTTAGGCATACCTCCAAATGATGAAAATCTTATGAAGAAACATGTGGCTAGCCAACCGATTGCAGCCGTAATGGAAATCACTAGGACATTCCATCGTTACATAGATGGTGTATACCAAGATGAATTTGGGGAATTTGTTGGGTACGGGACAGATGAAGATGACATGGACTACTGGTTAGTGAAGAATTCTTGGGGCCCGTATTGGGGTGAAGATGGATATTTTCGAATTCAAAGAAATGTGTATCGGCGAGGTGGTTTATGTGGCATCGCATCACGGCTTTCCTTCCCGTACATTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

309

Amino Acids

35.82

Weight (kDa)

7.01

Isoelectric Point (pI)

28.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	32 - 84	3.5e-08	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	110 - 306	4.2e-41	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008890)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G113800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0096291 RchiOBHm_Chr6g0264751 RchiOBHm_Chr6g0275001
rosa_laevigata	RLG00000002574 RLG00000016632
rosa_multiflora	Rmu_co8275375.1_g000001 Rmu_co8431381.1_g000001 Rmu_sc0000692.1_g000006 Rmu_sc0005996.1_g000021
rosa_roxburghii	Rroxscaffold_3G00243270
rosa_rugosa	Rorug02G0057500
rosa_samantha	Rh2AG104300 Rh2BG106400 Rh2CG108300 Rh2DG107100 Rh7AG298500 Rh7AG298900 Rh7BG289400 Rh7BG290600 Rh7CG318400 Rh7DG300400
rosa_wichuraiana	Rw7G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	126, 483, 741
AccII	CGCG	1 cut(s)	123
AciI	CCGC	4 cut(s)	69, 121, 382, 571
AcsI	RAATTY	6 cut(s)	162, 320, 752, 761, 814, 855
AcuI	CTGAAG	1 cut(s)	387
AfaI	GTAC	4 cut(s)	12, 490, 773, 920
AfiI	CCNNNNNNNGG	3 cut(s)	566, 832, 833
AflIII	ACRYGT	1 cut(s)	670
AgsI	TTSAA	3 cut(s)	98, 169, 860
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	2 cut(s)	217, 359
AluI	AGCT	2 cut(s)	217, 359
Alw21I	GWGCWC	1 cut(s)	519
Alw26I	GTCTC	3 cut(s)	262, 369, 471
Ama87I	CYCGRG	1 cut(s)	498
AoxI	GGCC	2 cut(s)	495, 823
ApaI	GGGCCC	1 cut(s)	827
ApeKI	GCWGC	5 cut(s)	261, 410, 413, 416, 692
ApoI	RAATTY	6 cut(s)	162, 320, 752, 761, 814, 855
AspS9I	GGNCC	4 cut(s)	496, 574, 823, 824
AsuHPI	GGTGA	4 cut(s)	10, 34, 242, 848
AsuII	TTCGAA	1 cut(s)	853
AsuNHI	GCTAGC	1 cut(s)	677
AvaI	CYCGRG	1 cut(s)	498
AvaII	GGWCC	1 cut(s)	574
BaeGI	GKGCMC	2 cut(s)	536, 827
BanII	GRGCYC	1 cut(s)	827
Bbv12I	GWGCWC	1 cut(s)	519
BbvI	GCAGC	5 cut(s)	248, 422, 425, 428, 704
BccI	CCATC	5 cut(s)	53, 100, 728, 729, 836
BceAI	ACGGC	2 cut(s)	680, 920
BciT130I	CCWGG	1 cut(s)	196
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	3 cut(s)	262, 369, 471
BfaI	CTAG	3 cut(s)	678, 711, 928
BisI	GCNGC	5 cut(s)	262, 411, 414, 417, 693
BlsI	GCNGC	5 cut(s)	263, 412, 415, 418, 694
Bme1390I	CCNGG	1 cut(s)	196
Bme18I	GGWCC	1 cut(s)	574
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	4 cut(s)	496, 574, 823, 824
BmiI	GGNNCC	3 cut(s)	575, 824, 825
BmrFI	CCNGG	1 cut(s)	196
BmsI	GCATC	3 cut(s)	80, 903, 908
BmtI	GCTAGC	1 cut(s)	681
BpmI	CTGGAG	1 cut(s)	308
Bpu10I	CCTNAGC	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	853
BpuEI	CTTGAG	1 cut(s)	512
BsaBI	GATNNNNATC	1 cut(s)	654
BsaI	GGTCTC	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	451, 481
Bsc4I	CCNNNNNNNGG	3 cut(s)	566, 832, 833
Bse1I	ACTGG	2 cut(s)	291, 806
Bse8I	GATNNNNATC	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	74, 111
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	3 cut(s)	566, 832, 833
BseNI	ACTGG	2 cut(s)	291, 806
BseRI	GAGGAG	1 cut(s)	459
BseSI	GKGCMC	2 cut(s)	536, 827
BseXI	GCAGC	5 cut(s)	248, 422, 425, 428, 704
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	497, 825
BsiHKAI	GWGCWC	1 cut(s)	519
BsiHKCI	CYCGRG	1 cut(s)	498
BslFI	GGGAC	2 cut(s)	587, 790
BslI	CCNNNNNNNGG	3 cut(s)	566, 832, 833
BsmAI	GTCTC	3 cut(s)	262, 369, 471
BsmFI	GGGAC	2 cut(s)	587, 790
BsnI	GGCC	2 cut(s)	497, 825
Bso31I	GGTCTC	1 cut(s)	369
BsoBI	CYCGRG	1 cut(s)	498
Bsp119I	TTCGAA	1 cut(s)	853
Bsp120I	GGGCCC	1 cut(s)	823
Bsp1286I	GDGCHC	3 cut(s)	519, 536, 827
Bsp143I	GATC	2 cut(s)	232, 549
BspACI	CCGC	4 cut(s)	69, 121, 382, 571
BspANI	GGCC	2 cut(s)	497, 825
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	3 cut(s)	575, 824, 825
BspOI	GCTAGC	1 cut(s)	681
BspT104I	TTCGAA	1 cut(s)	853
BspTNI	GGTCTC	1 cut(s)	369
BsrI	ACTGG	2 cut(s)	291, 806
BssMI	GATC	2 cut(s)	232, 549
BssNAI	GTATAC	1 cut(s)	742
Bst1107I	GTATAC	1 cut(s)	742
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	1 cut(s)	488
Bst6I	CTCTTC	2 cut(s)	31, 93
BstBI	TTCGAA	1 cut(s)	853
BstC8I	GCNNGC	2 cut(s)	192, 679
BstDEI	CTNAG	3 cut(s)	213, 277, 631
BstF5I	GGATG	2 cut(s)	74, 111
BstFNI	CGCG	1 cut(s)	123
BstKTI	GATC	2 cut(s)	235, 552
BstMAI	GTCTC	3 cut(s)	262, 369, 471
BstMBI	GATC	2 cut(s)	232, 549
BstMWI	GCNNNNNNNGC	3 cut(s)	407, 416, 540
BstNI	CCWGG	1 cut(s)	196
BstNSI	RCATGY	1 cut(s)	674
BstSCI	CCNGG	1 cut(s)	194
BstSLI	GKGCMC	2 cut(s)	536, 827
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	5 cut(s)	248, 422, 425, 428, 704
BstZ17I	GTATAC	1 cut(s)	742
BsuRI	GGCC	2 cut(s)	497, 825
BtgZI	GCGATG	1 cut(s)	880
BtsCI	GGATG	2 cut(s)	74, 111
BtsI	GCAGTG	1 cut(s)	550
BtsIMutI	CAGTG	4 cut(s)	237, 284, 363, 550
Cac8I	GCNNGC	2 cut(s)	192, 679
Cfr13I	GGNCC	4 cut(s)	496, 574, 823, 824
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	4 cut(s)	11, 489, 772, 919
CviAII	CATG	4 cut(s)	49, 582, 671, 793
CviQI	GTAC	4 cut(s)	11, 489, 772, 919
DdeI	CTNAG	3 cut(s)	213, 277, 631
DpnI	GATC	2 cut(s)	234, 551
DpnII	GATC	2 cut(s)	232, 549
Eam1104I	CTCTTC	2 cut(s)	31, 93
EarI	CTCTTC	2 cut(s)	31, 93
Eco24I	GRGCYC	1 cut(s)	827
Eco31I	GGTCTC	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	605
Eco47I	GGWCC	1 cut(s)	574
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	498
EcoO109I	RGGNCCY	1 cut(s)	823
EcoRI	GAATTC	2 cut(s)	814, 855
EcoRII	CCWGG	1 cut(s)	194
EcoRV	GATATC	1 cut(s)	605
EcoT38I	GRGCYC	1 cut(s)	827
FaeI	CATG	4 cut(s)	52, 585, 674, 796
FalI	AAGNNNNNCTT	4 cut(s)	161, 193, 592, 624
FaqI	GGGAC	2 cut(s)	587, 790
FatI	CATG	4 cut(s)	48, 581, 670, 792
FauI	CCCGC	2 cut(s)	375, 564
FauNDI	CATATG	1 cut(s)	349
FbaI	TGATCA	1 cut(s)	232
FblI	GTMKAC	3 cut(s)	126, 483, 741
Fnu4HI	GCNGC	5 cut(s)	262, 411, 414, 417, 693
FokI	GGATG	2 cut(s)	61, 118
FriOI	GRGCYC	1 cut(s)	827
Fsp4HI	GCNGC	5 cut(s)	262, 411, 414, 417, 693
FspBI	CTAG	3 cut(s)	678, 711, 928
GluI	GCNGC	5 cut(s)	262, 411, 414, 417, 693
GsuI	CTGGAG	1 cut(s)	308
HaeIII	GGCC	2 cut(s)	497, 825
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	4 cut(s)	52, 585, 674, 796
HinfI	GANTC	1 cut(s)	525
HphI	GGTGA	4 cut(s)	10, 34, 242, 848
Hpy166II	GTNNAC	3 cut(s)	127, 484, 742
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	3 cut(s)	127, 484, 742
HpyAV	CCTTC	5 cut(s)	25, 31, 347, 419, 922
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4V	TGCA	2 cut(s)	585, 692
HpyF10VI	GCNNNNNNNGC	3 cut(s)	407, 416, 540
HpyF3I	CTNAG	3 cut(s)	213, 277, 631
Hsp92II	CATG	4 cut(s)	52, 585, 674, 796
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	232, 549
LmnI	GCTCC	2 cut(s)	331, 356
LpnPI	CCDG	7 cut(s)	181, 208, 272, 342, 392, 479, 787
Lsp1109I	GCAGC	5 cut(s)	248, 422, 425, 428, 704
LweI	GCATC	3 cut(s)	80, 903, 908
MaeI	CTAG	3 cut(s)	678, 711, 928
MaeIII	GTNAC	4 cut(s)	361, 457, 626, 725
MalI	GATC	2 cut(s)	234, 551
MboI	GATC	2 cut(s)	232, 549
MboII	GAAGA	6 cut(s)	18, 110, 676, 797, 823, 851
MfeI	CAATTG	1 cut(s)	537
MhlI	GDGCHC	3 cut(s)	519, 536, 827
MlyI	GAGTC	1 cut(s)	519
MnlI	CCTC	4 cut(s)	144, 480, 651, 872
MseI	TTAA	2 cut(s)	180, 441
MslI	CAYNNNNRTG	2 cut(s)	47, 240
MspA1I	CMGCKG	1 cut(s)	382
MspR9I	CCNGG	1 cut(s)	196
MunI	CAATTG	1 cut(s)	537
MvaI	CCWGG	1 cut(s)	196
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	3 cut(s)	407, 416, 540
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	2 cut(s)	232, 549
NheI	GCTAGC	1 cut(s)	677
NlaIII	CATG	4 cut(s)	52, 585, 674, 796
NlaIV	GGNNCC	3 cut(s)	575, 824, 825
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	1 cut(s)	674
NspV	TTCGAA	1 cut(s)	853
PciI	ACATGT	1 cut(s)	670
PkrI	GCNGC	5 cut(s)	263, 412, 415, 418, 694
PleI	GAGTC	1 cut(s)	519
PpsI	GAGTC	1 cut(s)	519
PscI	ACATGT	1 cut(s)	670
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspN4I	GGNNCC	3 cut(s)	575, 824, 825
PspOMI	GGGCCC	1 cut(s)	823
PspPI	GGNCC	4 cut(s)	496, 574, 823, 824
RsaI	GTAC	4 cut(s)	12, 490, 773, 920
RsaNI	GTAC	4 cut(s)	11, 489, 772, 919
RseI	CAYNNNNRTG	2 cut(s)	47, 240
SaqAI	TTAA	2 cut(s)	180, 441
SatI	GCNGC	5 cut(s)	262, 411, 414, 417, 693
Sau3AI	GATC	2 cut(s)	232, 549
Sau96I	GGNCC	4 cut(s)	496, 574, 823, 824
SchI	GAGTC	1 cut(s)	519
ScrFI	CCNGG	1 cut(s)	196
SduI	GDGCHC	3 cut(s)	519, 536, 827
SetI	ASST	7 cut(s)	23, 200, 214, 219, 361, 643, 883
SfaNI	GCATC	3 cut(s)	80, 903, 908
SfuI	TTCGAA	1 cut(s)	853
SinI	GGWCC	1 cut(s)	574
SmiMI	CAYNNNNRTG	2 cut(s)	47, 240
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
SsiI	CCGC	4 cut(s)	69, 121, 382, 571
SspMI	CTAG	3 cut(s)	678, 711, 928
StyD4I	CCNGG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	488
TaqI	TCGA	2 cut(s)	423, 853
TatI	WGTACW	1 cut(s)	488
Tru1I	TTAA	2 cut(s)	180, 441
Tru9I	TTAA	2 cut(s)	180, 441
TscAI	CASTG	4 cut(s)	244, 291, 370, 550
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	5 cut(s)	261, 410, 413, 416, 692
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	9 cut(s)	28, 261, 333, 366, 553, 666, 677, 765, 798
TspGWI	ACGGA	1 cut(s)	537
TspRI	CASTG	4 cut(s)	244, 291, 370, 550
VpaK11BI	GGWCC	1 cut(s)	574
XapI	RAATTY	6 cut(s)	162, 320, 752, 761, 814, 855
XceI	RCATGY	1 cut(s)	674
XcmI	CCANNNNNNNNNTGG	1 cut(s)	752
XmiI	GTMKAC	3 cut(s)	126, 483, 741
XspI	CTAG	3 cut(s)	678, 711, 928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.