Rh7DG300400

cysteine-type peptidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008890
Physical Location & Seq
Forward (+)
34425134 .. 34425865
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG300400.1

Sequence Viewer

Length: 732 bp
ATGGCTATTGTTCGAAATAAAATAGTAATGTTGGTCATCACCATCATGCTCGGGACTTTGGCAATTGCATCATCTCAAGTACTACCATATGAAAAATACAAGAAACCCACTATCAATATTACGCAAAAGTTTGAAGAGTGGATGGCCGAGCTTAACCGTGTTTACTCCAATAATTCAGAAAATGAGAGGCGTTACGAAAATTTCAAGAAAAACTATGAGCAAATGCGAGCCAAGTATAACAATACTGAACCTGAAGCGGGGTTTGACTATGCAGTGGACTACGGAATCAACCGGCATATCACTTATCCATTCATCGGGCGGGACCAACCATGCAACGCCAAATTGGAAAGATATCCTTATGCAAAGATAAGTGGTTACTTAGGCATACCTCCAAATGATGAAAATCTTATGAAGAAATATGTGGCTAGCCAACCGATCGCAGCCGTAATGGAAATCACTAGGACATTCTATCATCACACAGATGATGATGGTGTATACCAAGATGAATTTGGGGAATGTGGAAGGTTACCAATGAGAGACCATAGCTATCACGCTGTTACAGTTGTTGGGTATGGGACAGATGAAGATGACATGGACTACTGGTTAGTGAAGAATTCTTGGGGTAGAGAAGGTGGATATTTCCGAATTCAAAGGAATGTGGATAAGCCAGGTGGTTTATGTGACATTGCATCATGGCCTTCCTACCCGTTCATCTCTCGCGATAGGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924
Pfam Domains
Protein Families
Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

243

Amino Acids

28.34

Weight (kDa)

6.0

Isoelectric Point (pI)

32.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 83 - 236 5.8e-26 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 495
AccII CGCG 1 cut(s) 720
AciI CCGC 2 cut(s) 257, 319
AcoI YGGCCR 1 cut(s) 144
AcsI RAATTY 4 cut(s) 199, 506, 613, 645
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 1 cut(s) 81
AfiI CCNNNNNNNGG 2 cut(s) 257, 314
AgsI TTSAA 3 cut(s) 134, 205, 650
AjnI CCWGG 1 cut(s) 667
AluBI AGCT 2 cut(s) 151, 546
AluI AGCT 2 cut(s) 151, 546
Alw26I GTCTC 1 cut(s) 531
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 2 cut(s) 144, 695
ApeKI GCWGC 1 cut(s) 440
ApoI RAATTY 4 cut(s) 199, 506, 613, 645
AspS9I GGNCC 1 cut(s) 322
AsuHPI GGTGA 1 cut(s) 31
AsuII TTCGAA 1 cut(s) 13
AsuNHI GCTAGC 1 cut(s) 425
AvaI CYCGRG 1 cut(s) 50
AvaII GGWCC 1 cut(s) 322
BbvI GCAGC 1 cut(s) 452
BccI CCATC 3 cut(s) 50, 136, 482
BceAI ACGGC 1 cut(s) 428
BciT130I CCWGG 1 cut(s) 669
BcoDI GTCTC 1 cut(s) 531
BfaI CTAG 3 cut(s) 426, 459, 730
BisI GCNGC 1 cut(s) 441
BlsI GCNGC 1 cut(s) 442
BmcAI AGTACT 1 cut(s) 81
Bme1390I CCNGG 1 cut(s) 669
Bme18I GGWCC 1 cut(s) 322
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 322
BmiI GGNNCC 1 cut(s) 323
BmrFI CCNGG 1 cut(s) 669
BmsI GCATC 2 cut(s) 77, 698
BmtI GCTAGC 1 cut(s) 429
Bpu14I TTCGAA 1 cut(s) 13
BpuEI CTTGAG 1 cut(s) 60
BsaBI GATNNNNATC 1 cut(s) 402
BsaI GGTCTC 1 cut(s) 531
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 314
Bse118I RCCGGY 1 cut(s) 291
Bse1I ACTGG 1 cut(s) 605
Bse3DI GCAATG 1 cut(s) 684
Bse8I GATNNNNATC 1 cut(s) 402
BseBI CCWGG 1 cut(s) 669
BseGI GGATG 1 cut(s) 147
BseJI GATNNNNATC 1 cut(s) 402
BseLI CCNNNNNNNGG 2 cut(s) 257, 314
BseMI GCAATG 1 cut(s) 684
BseNI ACTGG 1 cut(s) 605
BseXI GCAGC 1 cut(s) 452
Bsh1236I CGCG 1 cut(s) 720
Bsh1285I CGRYCG 1 cut(s) 438
BshFI GGCC 2 cut(s) 146, 697
BsiEI CGRYCG 1 cut(s) 438
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 1 cut(s) 292
BslFI GGGAC 3 cut(s) 67, 335, 589
BslI CCNNNNNNNGG 2 cut(s) 257, 314
BsmAI GTCTC 1 cut(s) 531
BsmFI GGGAC 3 cut(s) 67, 335, 589
BsnI GGCC 2 cut(s) 146, 697
Bso31I GGTCTC 1 cut(s) 531
BsoBI CYCGRG 1 cut(s) 50
Bsp119I TTCGAA 1 cut(s) 13
Bsp143I GATC 2 cut(s) 435, 726
Bsp68I TCGCGA 1 cut(s) 720
BspACI CCGC 2 cut(s) 257, 319
BspANI GGCC 2 cut(s) 146, 697
BspFNI CGCG 1 cut(s) 720
BspLI GGNNCC 1 cut(s) 323
BspOI GCTAGC 1 cut(s) 429
BspT104I TTCGAA 1 cut(s) 13
BspTNI GGTCTC 1 cut(s) 531
BsrDI GCAATG 1 cut(s) 684
BsrFI RCCGGY 1 cut(s) 291
BsrI ACTGG 1 cut(s) 605
BssAI RCCGGY 1 cut(s) 291
BssMI GATC 2 cut(s) 435, 726
BssNAI GTATAC 1 cut(s) 496
Bst1107I GTATAC 1 cut(s) 496
Bst2UI CCWGG 1 cut(s) 669
Bst4CI ACNGT 2 cut(s) 158, 562
Bst6I CTCTTC 1 cut(s) 129
BstBI TTCGAA 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 228, 427
BstDEI CTNAG 1 cut(s) 379
BstEII GGTNACC 1 cut(s) 525
BstF5I GGATG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 720
BstKTI GATC 2 cut(s) 438, 729
BstMAI GTCTC 1 cut(s) 531
BstMBI GATC 2 cut(s) 435, 726
BstMCI CGRYCG 1 cut(s) 438
BstNI CCWGG 1 cut(s) 669
BstPI GGTNACC 1 cut(s) 525
BstSCI CCNGG 1 cut(s) 667
BstUI CGCG 1 cut(s) 720
BstV1I GCAGC 1 cut(s) 452
BstX2I RGATCY 1 cut(s) 726
BstYI RGATCY 1 cut(s) 726
BstZ17I GTATAC 1 cut(s) 496
BsuRI GGCC 2 cut(s) 146, 697
BtsCI GGATG 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
BtuMI TCGCGA 1 cut(s) 720
Cac8I GCNNGC 2 cut(s) 228, 427
Cfr10I RCCGGY 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 322
Csp6I GTAC 1 cut(s) 80
CviAII CATG 4 cut(s) 46, 330, 592, 693
CviQI GTAC 1 cut(s) 80
DdeI CTNAG 1 cut(s) 379
DpnI GATC 2 cut(s) 437, 728
DpnII GATC 2 cut(s) 435, 726
EaeI YGGCCR 1 cut(s) 144
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco31I GGTCTC 1 cut(s) 531
Eco32I GATATC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 322
Eco57I CTGAAG 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 50
Eco91I GGTNACC 1 cut(s) 525
EcoO65I GGTNACC 1 cut(s) 525
EcoRI GAATTC 2 cut(s) 613, 645
EcoRII CCWGG 1 cut(s) 667
EcoRV GATATC 1 cut(s) 353
FaeI CATG 4 cut(s) 49, 333, 595, 696
FalI AAGNNNNNCTT 2 cut(s) 340, 372
FaqI GGGAC 3 cut(s) 67, 335, 589
FatI CATG 4 cut(s) 45, 329, 591, 692
FauI CCCGC 2 cut(s) 250, 312
FauNDI CATATG 1 cut(s) 88
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 1 cut(s) 441
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 1 cut(s) 441
FspBI CTAG 3 cut(s) 426, 459, 730
GluI GCNGC 1 cut(s) 441
HaeIII GGCC 2 cut(s) 146, 697
HapII CCGG 1 cut(s) 292
Hin1II CATG 4 cut(s) 49, 333, 595, 696
HinfI GANTC 1 cut(s) 285
HpaII CCGG 1 cut(s) 292
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 3 cut(s) 163, 277, 496
Hpy188I TCNGA 2 cut(s) 178, 644
Hpy188III TCNNGA 3 cut(s) 52, 205, 719
Hpy8I GTNNAC 3 cut(s) 163, 277, 496
HpyAV CCTTC 3 cut(s) 516, 623, 708
HpyCH4III ACNGT 2 cut(s) 158, 562
HpyCH4V TGCA 5 cut(s) 68, 272, 333, 362, 689
HpyF3I CTNAG 1 cut(s) 379
Hsp92II CATG 4 cut(s) 49, 333, 595, 696
Kzo9I GATC 2 cut(s) 435, 726
LpnPI CCDG 5 cut(s) 264, 305, 586, 654, 681
Lsp1109I GCAGC 1 cut(s) 452
LweI GCATC 2 cut(s) 77, 698
MaeI CTAG 3 cut(s) 426, 459, 730
MaeIII GTNAC 5 cut(s) 191, 374, 525, 556, 680
MalI GATC 2 cut(s) 437, 728
MboI GATC 2 cut(s) 435, 726
MboII GAAGA 4 cut(s) 146, 424, 596, 622
MfeI CAATTG 1 cut(s) 63
MflI RGATCY 1 cut(s) 726
MluCI AATT 7 cut(s) 63, 172, 199, 341, 506, 613, 645
MnlI CCTC 2 cut(s) 180, 399
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 2 cut(s) 44, 480
MspI CCGG 1 cut(s) 292
MspR9I CCNGG 1 cut(s) 669
MunI CAATTG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 669
MvnI CGCG 1 cut(s) 720
NdeI CATATG 1 cut(s) 88
NdeII GATC 2 cut(s) 435, 726
NheI GCTAGC 1 cut(s) 425
NlaIII CATG 4 cut(s) 49, 333, 595, 696
NlaIV GGNNCC 1 cut(s) 323
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 680
NruI TCGCGA 1 cut(s) 720
NspV TTCGAA 1 cut(s) 13
PfeI GAWTC 1 cut(s) 285
PkrI GCNGC 1 cut(s) 442
Ple19I CGATCG 1 cut(s) 438
Psp6I CCWGG 1 cut(s) 667
PspEI GGTNACC 1 cut(s) 525
PspGI CCWGG 1 cut(s) 667
PspN4I GGNNCC 1 cut(s) 323
PspPI GGNCC 1 cut(s) 322
PsuI RGATCY 1 cut(s) 726
PvuI CGATCG 1 cut(s) 438
RruI TCGCGA 1 cut(s) 720
RsaI GTAC 1 cut(s) 81
RsaNI GTAC 1 cut(s) 80
RseI CAYNNNNRTG 2 cut(s) 44, 480
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 441
Sau3AI GATC 2 cut(s) 435, 726
Sau96I GGNCC 1 cut(s) 322
ScaI AGTACT 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 669
SetI ASST 7 cut(s) 153, 253, 391, 527, 548, 634, 673
SfaNI GCATC 2 cut(s) 77, 698
SfuI TTCGAA 1 cut(s) 13
SinI GGWCC 1 cut(s) 322
SmiMI CAYNNNNRTG 2 cut(s) 44, 480
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
Sse9I AATT 7 cut(s) 63, 172, 199, 341, 506, 613, 645
SsiI CCGC 2 cut(s) 257, 319
SspI AATATT 1 cut(s) 118
SspMI CTAG 3 cut(s) 426, 459, 730
StyD4I CCNGG 1 cut(s) 667
TaaI ACNGT 2 cut(s) 158, 562
TaqI TCGA 1 cut(s) 13
TasI AATT 7 cut(s) 63, 172, 199, 341, 506, 613, 645
TatI WGTACW 1 cut(s) 79
TfiI GAWTC 1 cut(s) 285
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 1 cut(s) 680
TseI GCWGC 1 cut(s) 440
Tsp45I GTSAC 1 cut(s) 680
TspDTI ATGAA 7 cut(s) 105, 301, 414, 425, 519, 597, 700
TspGWI ACGGA 1 cut(s) 297
TspRI CASTG 1 cut(s) 279
VpaK11BI GGWCC 1 cut(s) 322
XapI RAATTY 4 cut(s) 199, 506, 613, 645
XcmI CCANNNNNNNNNTGG 1 cut(s) 506
XmiI GTMKAC 1 cut(s) 495
XspI CTAG 3 cut(s) 426, 459, 730
ZrmI AGTACT 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.