Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8275375.1

Orthogroup ID

OG0008890

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 525

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8275375.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 388 bp

atggctattgtacccttcatcttctcttctctcttgttcatcaccatcatgcttggaactacggcaactgcatcatcccacattacgcaaaagtttgaagagtggatggtaaaacataaccgcgtctactccaataattcagaaaaggagaggcgatacaaaattttcaaggaaaactttgagcaaaggcgagccaggtataacactgaacctaagctgaatatatttggtgatcacaccgatgatgaactccccaaaggctgcgtgagactacccttagaaccattggagatttcctacaatcctactttctttgatgaatttgctcctgactacaaaaattgggcatatgaaggagctgtcactgaagttagacgccagcagggcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0012505 GO:0031974 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

129

Amino Acids

15.25

Weight (kDa)

6.3

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008890)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G113800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0096291 RchiOBHm_Chr6g0264751 RchiOBHm_Chr6g0275001
rosa_laevigata	RLG00000002574 RLG00000016632
rosa_multiflora	Rmu_co8275375.1_g000001 Rmu_co8431381.1_g000001 Rmu_sc0000692.1_g000006 Rmu_sc0005996.1_g000021
rosa_roxburghii	Rroxscaffold_3G00243270
rosa_rugosa	Rorug02G0057500
rosa_samantha	Rh2AG104300 Rh2BG106400 Rh2CG108300 Rh2DG107100 Rh7AG298500 Rh7AG298900 Rh7BG289400 Rh7BG290600 Rh7CG318400 Rh7DG300400
rosa_wichuraiana	Rw7G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	1 cut(s)	123
AciI	CCGC	1 cut(s)	121
AcsI	RAATTY	2 cut(s)	162, 320
AcuI	CTGAAG	1 cut(s)	387
AcyI	GRCGYC	1 cut(s)	376
AfaI	GTAC	1 cut(s)	12
AgsI	TTSAA	2 cut(s)	98, 169
AjnI	CCWGG	1 cut(s)	194
AluBI	AGCT	2 cut(s)	217, 359
AluI	AGCT	2 cut(s)	217, 359
Alw26I	GTCTC	1 cut(s)	262
ApeKI	GCWGC	1 cut(s)	261
ApoI	RAATTY	2 cut(s)	162, 320
AsuHPI	GGTGA	2 cut(s)	34, 242
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	2 cut(s)	53, 100
BceAI	ACGGC	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	196
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	262
BglI	GCCNNNNNGGC	1 cut(s)	384
BisI	GCNGC	1 cut(s)	262
BlsI	GCNGC	1 cut(s)	263
Bme1390I	CCNGG	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	196
BmsI	GCATC	1 cut(s)	80
Bpu10I	CCTNAGC	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	376
BseBI	CCWGG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	74, 111
BseXI	GCAGC	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	123
BsmAI	GTCTC	1 cut(s)	262
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	123
BssMI	GATC	1 cut(s)	232
BssNI	GRCGYC	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	196
Bst6I	CTCTTC	2 cut(s)	31, 93
BstACI	GRCGYC	1 cut(s)	376
BstC8I	GCNNGC	2 cut(s)	192, 380
BstDEI	CTNAG	2 cut(s)	213, 277
BstF5I	GGATG	2 cut(s)	74, 111
BstFNI	CGCG	1 cut(s)	123
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstNI	CCWGG	1 cut(s)	196
BstSCI	CCNGG	1 cut(s)	194
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	74, 111
BtsIMutI	CAGTG	2 cut(s)	204, 363
Cac8I	GCNNGC	2 cut(s)	192, 380
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	11
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	5 cut(s)	5, 194, 217, 261, 359
CviKI_1	RGCY	5 cut(s)	5, 194, 217, 261, 359
CviQI	GTAC	1 cut(s)	11
DdeI	CTNAG	2 cut(s)	213, 277
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
Eam1104I	CTCTTC	2 cut(s)	31, 93
EarI	CTCTTC	2 cut(s)	31, 93
Eco57I	CTGAAG	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	194
FaeI	CATG	1 cut(s)	52
FaiI	YATR	6 cut(s)	50, 117, 201, 224, 349, 351
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	349
FbaI	TGATCA	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	262
FokI	GGATG	2 cut(s)	61, 118
Fsp4HI	GCNGC	1 cut(s)	262
GluI	GCNGC	1 cut(s)	262
HgaI	GACGC	1 cut(s)	112
Hin1I	GRCGYC	1 cut(s)	376
Hin1II	CATG	1 cut(s)	52
HphI	GGTGA	2 cut(s)	34, 242
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	1 cut(s)	329
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	25, 347
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	2 cut(s)	213, 277
Hsp92I	GRCGYC	1 cut(s)	376
Hsp92II	CATG	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	2 cut(s)	331, 356
LpnPI	CCDG	4 cut(s)	181, 208, 342, 368
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	3 cut(s)	13, 18, 110
MluCI	AATT	4 cut(s)	136, 162, 320, 340
MnlI	CCTC	1 cut(s)	144
MslI	CAYNNNNRTG	2 cut(s)	47, 240
MspR9I	CCNGG	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	196
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	384
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	263
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	12
RsaNI	GTAC	1 cut(s)	11
RseI	CAYNNNNRTG	2 cut(s)	47, 240
SatI	GCNGC	1 cut(s)	262
Sau3AI	GATC	1 cut(s)	232
ScrFI	CCNGG	1 cut(s)	196
SetI	ASST	4 cut(s)	200, 214, 219, 361
SfaNI	GCATC	1 cut(s)	80
SmiMI	CAYNNNNRTG	2 cut(s)	47, 240
Sse9I	AATT	4 cut(s)	136, 162, 320, 340
SsiI	CCGC	1 cut(s)	121
StyD4I	CCNGG	1 cut(s)	194
TasI	AATT	4 cut(s)	136, 162, 320, 340
TscAI	CASTG	2 cut(s)	211, 370
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	261
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	5 cut(s)	7, 28, 261, 333, 366
TspRI	CASTG	2 cut(s)	211, 370
XapI	RAATTY	2 cut(s)	162, 320
XmiI	GTMKAC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.