Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0008890

Physical Location & Seq

Genomic Coordinates Reverse (-)

9000172 .. 9001569

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG104300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCTCTCATTGTTTCAGAGAAACCTCTTGACATAGGAATGTCGGTCATCACCATCATGCTCGGGACTTGGCAGTATATATGTATGGCGTTGGGGAGCCAGGGCACAATCGGGGGTGGTTATCCAAATCGGGGGTTTGAATATGCAGCGGAGCACGCAATCAACCGGGAGAACAGTTACCCAATCAACGGTAGGAACCAACCATGCAAAGGCAAATTGGAAAGAAATCCTTATGTGAAGATAAGTGGTTACATGAACATACCACCAAATAATGAAAAATATTGTATTTTTGTGGCTGAACAACCGACTGTAGCAGGAATGGAGGTCACCGAGACATTTTACATTGATTACAAATATGGTATCTACACCGATAAAAATAGAGAATGTGGAATATTACCGATGGATAACCGTGCCTACCATGCTGTTACAATCGTAGGGAATAGGACAGAAGATGACACAAACCACTGGTTAGTGAAGAATTCTTTGGGGCTCGGACTGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

167

Amino Acids

18.67

Weight (kDa)

5.91

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	38 - 162	1.9e-18	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008890)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G113800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0096291 RchiOBHm_Chr6g0264751 RchiOBHm_Chr6g0275001
rosa_laevigata	RLG00000002574 RLG00000016632
rosa_multiflora	Rmu_co8275375.1_g000001 Rmu_co8431381.1_g000001 Rmu_sc0000692.1_g000006 Rmu_sc0005996.1_g000021
rosa_roxburghii	Rroxscaffold_3G00243270
rosa_rugosa	Rorug02G0057500
rosa_samantha	Rh2AG104300 Rh2BG106400 Rh2CG108300 Rh2DG107100 Rh7AG298500 Rh7AG298900 Rh7BG289400 Rh7BG290600 Rh7CG318400 Rh7DG300400
rosa_wichuraiana	Rw7G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	478
AfiI	CCNNNNNNNGG	3 cut(s)	131, 188, 209
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	99
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	326
Ama87I	CYCGRG	1 cut(s)	62
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	478
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	2 cut(s)	43, 319
AvaI	CYCGRG	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	2 cut(s)	62, 394
BciT130I	CCWGG	1 cut(s)	101
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	101, 167
BmeT110I	CYCGRG	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	98, 197
BmrFI	CCNGG	2 cut(s)	101, 167
BpuMI	CCSGG	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 188, 209
Bse1I	ACTGG	2 cut(s)	470, 501
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	100
BseLI	CCNNNNNNNGG	3 cut(s)	131, 188, 209
BseNI	ACTGG	2 cut(s)	470, 501
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	156
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	166
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	3 cut(s)	131, 188, 209
BsmAI	GTCTC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	79
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	3 cut(s)	107, 156, 492
BspACI	CCGC	1 cut(s)	149
BspLI	GGNNCC	2 cut(s)	98, 197
BsrI	ACTGG	2 cut(s)	470, 501
BssECI	CCNNGG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	4 cut(s)	176, 191, 310, 410
BstC8I	GCNNGC	1 cut(s)	156
BstEII	GGTNACC	1 cut(s)	325
BstMAI	GTCTC	1 cut(s)	326
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 419
BstNI	CCWGG	1 cut(s)	101
BstPI	GGTNACC	1 cut(s)	325
BstSCI	CCNGG	2 cut(s)	99, 165
BstSFI	CTRYAG	1 cut(s)	309
BstSLI	GKGCMC	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	463
Cac8I	GCNNGC	1 cut(s)	156
CviAII	CATG	4 cut(s)	58, 204, 253, 419
CviJI	RGCY	4 cut(s)	5, 99, 296, 490
CviKI_1	RGCY	4 cut(s)	5, 99, 296, 490
Eco24I	GRGCYC	1 cut(s)	492
Eco88I	CYCGRG	1 cut(s)	62
Eco91I	GGTNACC	1 cut(s)	325
EcoO65I	GGTNACC	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	99
EcoT38I	GRGCYC	1 cut(s)	492
FaeI	CATG	4 cut(s)	61, 207, 256, 422
FalI	AAGNNNNNCTT	2 cut(s)	214, 246
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	4 cut(s)	57, 203, 252, 418
Fnu4HI	GCNGC	1 cut(s)	147
FriOI	GRGCYC	1 cut(s)	492
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
HapII	CCGG	1 cut(s)	166
Hin1II	CATG	4 cut(s)	61, 207, 256, 422
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	2 cut(s)	43, 319
Hpy188I	TCNGA	2 cut(s)	19, 494
Hpy188III	TCNNGA	2 cut(s)	29, 64
HpyCH4III	ACNGT	4 cut(s)	176, 191, 310, 410
HpyCH4V	TGCA	2 cut(s)	146, 207
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 419
Hsp92II	CATG	4 cut(s)	61, 207, 256, 422
LmnI	GCTCC	2 cut(s)	96, 151
LpnPI	CCDG	6 cut(s)	86, 113, 179, 300, 451, 482
Lsp1109I	GCAGC	1 cut(s)	158
MaeIII	GTNAC	4 cut(s)	176, 248, 325, 424
MboII	GAAGA	3 cut(s)	250, 461, 487
MhlI	GDGCHC	3 cut(s)	107, 156, 492
MluCI	AATT	2 cut(s)	215, 478
MnlI	CCTC	2 cut(s)	36, 316
MslI	CAYNNNNRTG	2 cut(s)	38, 56
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	2 cut(s)	101, 167
MvaI	CCWGG	1 cut(s)	101
MwoI	GCNNNNNNNGC	2 cut(s)	155, 419
NciI	CCSGG	1 cut(s)	167
NlaIII	CATG	4 cut(s)	61, 207, 256, 422
NlaIV	GGNNCC	2 cut(s)	98, 197
NmuCI	GTSAC	1 cut(s)	325
PkrI	GCNGC	1 cut(s)	148
Psp6I	CCWGG	1 cut(s)	99
PspEI	GGTNACC	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	98, 197
RseI	CAYNNNNRTG	2 cut(s)	38, 56
SatI	GCNGC	1 cut(s)	147
ScrFI	CCNGG	2 cut(s)	101, 167
SduI	GDGCHC	3 cut(s)	107, 156, 492
SetI	ASST	2 cut(s)	28, 327
SfcI	CTRYAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	2 cut(s)	38, 56
Sse9I	AATT	2 cut(s)	215, 478
SsiI	CCGC	1 cut(s)	149
SspI	AATATT	2 cut(s)	281, 393
StyD4I	CCNGG	2 cut(s)	99, 165
TaaI	ACNGT	4 cut(s)	176, 191, 310, 410
TaqII	GACCGA	1 cut(s)	34
TasI	AATT	2 cut(s)	215, 478
TscAI	CASTG	1 cut(s)	470
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	2 cut(s)	269, 288
TspRI	CASTG	1 cut(s)	470
XapI	RAATTY	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.