Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| prunus_persica | Prupe.5G113800_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0096291 RchiOBHm_Chr6g0264751 RchiOBHm_Chr6g0275001 |
| rosa_laevigata | RLG00000002574 RLG00000016632 |
| rosa_multiflora | Rmu_co8275375.1_g000001 Rmu_co8431381.1_g000001 Rmu_sc0000692.1_g000006 Rmu_sc0005996.1_g000021 |
| rosa_roxburghii | Rroxscaffold_3G00243270 |
| rosa_rugosa | Rorug02G0057500 |
| rosa_samantha | Rh2AG104300 Rh2BG106400 Rh2CG108300 Rh2DG107100 Rh7AG298500 Rh7AG298900 Rh7BG289400 Rh7BG290600 Rh7CG318400 Rh7DG300400 |
| rosa_wichuraiana | Rw7G025390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 346 |
| Acc36I | ACCTGC | 1 cut(s) | 346 |
| AccI | GTMKAC | 2 cut(s) | 21, 326 |
| AccII | CGCG | 1 cut(s) | 262 |
| AclWI | GGATC | 2 cut(s) | 148, 418 |
| AcsI | RAATTY | 2 cut(s) | 57, 175 |
| AcuI | CTGAAG | 1 cut(s) | 137 |
| AfaI | GTAC | 1 cut(s) | 322 |
| AgsI | TTSAA | 2 cut(s) | 64, 180 |
| AhlI | ACTAGT | 1 cut(s) | 329 |
| AluBI | AGCT | 4 cut(s) | 115, 124, 169, 438 |
| AluI | AGCT | 4 cut(s) | 115, 124, 169, 438 |
| Alw21I | GWGCWC | 1 cut(s) | 171 |
| Alw26I | GTCTC | 1 cut(s) | 216 |
| AlwI | GGATC | 2 cut(s) | 148, 418 |
| ApoI | RAATTY | 2 cut(s) | 57, 175 |
| AspLEI | GCGC | 1 cut(s) | 376 |
| AsuC2I | CCSGG | 1 cut(s) | 316 |
| AsuHPI | GGTGA | 5 cut(s) | 198, 266, 296, 370, 409 |
| BanII | GRGCYC | 1 cut(s) | 171 |
| Bbv12I | GWGCWC | 1 cut(s) | 171 |
| BcnI | CCSGG | 1 cut(s) | 316 |
| BcoDI | GTCTC | 1 cut(s) | 216 |
| BcuI | ACTAGT | 1 cut(s) | 329 |
| BfaI | CTAG | 1 cut(s) | 330 |
| BfoI | RGCGCY | 1 cut(s) | 377 |
| BfuAI | ACCTGC | 1 cut(s) | 346 |
| Bme1390I | CCNGG | 1 cut(s) | 316 |
| BmiI | GGNNCC | 1 cut(s) | 309 |
| BmrFI | CCNGG | 1 cut(s) | 316 |
| Bpu10I | CCTNAGC | 2 cut(s) | 111, 377 |
| BpuEI | CTTGAG | 2 cut(s) | 155, 368 |
| BpuMI | CCSGG | 1 cut(s) | 316 |
| Bsa29I | ATCGAT | 1 cut(s) | 413 |
| BsaAI | YACGTR | 1 cut(s) | 324 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 462, 492 |
| BseCI | ATCGAT | 1 cut(s) | 413 |
| BseGI | GGATG | 1 cut(s) | 394 |
| BseMII | CTCAG | 1 cut(s) | 102 |
| BseRI | GAGGAG | 3 cut(s) | 255, 258, 470 |
| Bsh1236I | CGCG | 1 cut(s) | 262 |
| BshVI | ATCGAT | 1 cut(s) | 413 |
| BsiHKAI | GWGCWC | 1 cut(s) | 171 |
| BsiSI | CCGG | 1 cut(s) | 315 |
| BsiWI | CGTACG | 1 cut(s) | 320 |
| BsmAI | GTCTC | 1 cut(s) | 216 |
| BsmBI | CGTCTC | 1 cut(s) | 216 |
| Bsp1286I | GDGCHC | 1 cut(s) | 171 |
| Bsp143I | GATC | 2 cut(s) | 140, 410 |
| BspCNI | CTCAG | 1 cut(s) | 103 |
| BspDI | ATCGAT | 1 cut(s) | 413 |
| BspFNI | CGCG | 1 cut(s) | 262 |
| BspLI | GGNNCC | 1 cut(s) | 309 |
| BspMI | ACCTGC | 1 cut(s) | 346 |
| BspPI | GGATC | 2 cut(s) | 148, 418 |
| BssMI | GATC | 2 cut(s) | 140, 410 |
| BssNAI | GTATAC | 1 cut(s) | 327 |
| Bst1107I | GTATAC | 1 cut(s) | 327 |
| BstBAI | YACGTR | 1 cut(s) | 324 |
| BstC8I | GCNNGC | 1 cut(s) | 87 |
| BstDEI | CTNAG | 2 cut(s) | 111, 377 |
| BstF5I | GGATG | 1 cut(s) | 394 |
| BstFNI | CGCG | 1 cut(s) | 262 |
| BstH2I | RGCGCY | 1 cut(s) | 377 |
| BstHHI | GCGC | 1 cut(s) | 376 |
| BstKTI | GATC | 2 cut(s) | 143, 413 |
| BstMAI | GTCTC | 1 cut(s) | 216 |
| BstMBI | GATC | 2 cut(s) | 140, 410 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 121 |
| BstSCI | CCNGG | 1 cut(s) | 314 |
| BstSNI | TACGTA | 1 cut(s) | 324 |
| BstUI | CGCG | 1 cut(s) | 262 |
| BstZ17I | GTATAC | 1 cut(s) | 327 |
| Bsu15I | ATCGAT | 1 cut(s) | 413 |
| BsuTUI | ATCGAT | 1 cut(s) | 413 |
| BtsCI | GGATG | 1 cut(s) | 394 |
| BveI | ACCTGC | 1 cut(s) | 346 |
| Cac8I | GCNNGC | 1 cut(s) | 87 |
| CfoI | GCGC | 1 cut(s) | 376 |
| ClaI | ATCGAT | 1 cut(s) | 413 |
| CseI | GACGC | 1 cut(s) | 233 |
| Csp6I | GTAC | 1 cut(s) | 321 |
| CviJI | RGCY | 9 cut(s) | 89, 115, 124, 169, 184, 269, 382, 431, 438 |
| CviKI_1 | RGCY | 9 cut(s) | 89, 115, 124, 169, 184, 269, 382, 431, 438 |
| CviQI | GTAC | 1 cut(s) | 321 |
| DdeI | CTNAG | 2 cut(s) | 111, 377 |
| DpnI | GATC | 2 cut(s) | 142, 412 |
| DpnII | GATC | 2 cut(s) | 140, 410 |
| Ecl136II | GAGCTC | 1 cut(s) | 169 |
| Eco105I | TACGTA | 1 cut(s) | 324 |
| Eco24I | GRGCYC | 1 cut(s) | 171 |
| Eco53kI | GAGCTC | 1 cut(s) | 169 |
| Eco57I | CTGAAG | 1 cut(s) | 137 |
| EcoICRI | GAGCTC | 1 cut(s) | 169 |
| EcoRI | GAATTC | 1 cut(s) | 175 |
| EcoT38I | GRGCYC | 1 cut(s) | 171 |
| Esp3I | CGTCTC | 1 cut(s) | 216 |
| FaiI | YATR | 8 cut(s) | 12, 75, 96, 153, 190, 327, 365, 457 |
| FblI | GTMKAC | 2 cut(s) | 21, 326 |
| FokI | GGATG | 1 cut(s) | 401 |
| FriOI | GRGCYC | 1 cut(s) | 171 |
| FspBI | CTAG | 1 cut(s) | 330 |
| GlaI | GCGC | 1 cut(s) | 375 |
| HaeII | RGCGCY | 1 cut(s) | 377 |
| HapII | CCGG | 1 cut(s) | 315 |
| HgaI | GACGC | 1 cut(s) | 233 |
| HhaI | GCGC | 1 cut(s) | 376 |
| Hin6I | GCGC | 1 cut(s) | 374 |
| HinP1I | GCGC | 1 cut(s) | 374 |
| HindIII | AAGCTT | 2 cut(s) | 122, 436 |
| HinfI | GANTC | 2 cut(s) | 257, 415 |
| HpaII | CCGG | 1 cut(s) | 315 |
| HphI | GGTGA | 5 cut(s) | 198, 266, 296, 370, 409 |
| Hpy166II | GTNNAC | 2 cut(s) | 22, 327 |
| Hpy188I | TCNGA | 1 cut(s) | 37 |
| Hpy188III | TCNNGA | 3 cut(s) | 64, 144, 172 |
| Hpy8I | GTNNAC | 2 cut(s) | 22, 327 |
| HpyAV | CCTTC | 2 cut(s) | 321, 439 |
| HpyCH4IV | ACGT | 1 cut(s) | 323 |
| HpyCH4V | TGCA | 1 cut(s) | 158 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 121 |
| HpyF3I | CTNAG | 2 cut(s) | 111, 377 |
| HpySE526I | ACGT | 1 cut(s) | 323 |
| HspAI | GCGC | 1 cut(s) | 374 |
| Kzo9I | GATC | 2 cut(s) | 140, 410 |
| LpnPI | CCDG | 3 cut(s) | 123, 328, 341 |
| MaeI | CTAG | 1 cut(s) | 330 |
| MaeII | ACGT | 1 cut(s) | 323 |
| MaeIII | GTNAC | 2 cut(s) | 50, 466 |
| MalI | GATC | 2 cut(s) | 142, 412 |
| MboI | GATC | 2 cut(s) | 140, 410 |
| MboII | GAAGA | 2 cut(s) | 130, 195 |
| MhlI | GDGCHC | 1 cut(s) | 171 |
| MluCI | AATT | 4 cut(s) | 31, 57, 175, 229 |
| MnlI | CCTC | 5 cut(s) | 233, 236, 364, 488, 491 |
| MseI | TTAA | 1 cut(s) | 129 |
| MslI | CAYNNNNRTG | 2 cut(s) | 15, 211 |
| MspI | CCGG | 1 cut(s) | 315 |
| MspR9I | CCNGG | 1 cut(s) | 316 |
| MvnI | CGCG | 1 cut(s) | 262 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 121 |
| NciI | CCSGG | 1 cut(s) | 316 |
| NdeII | GATC | 2 cut(s) | 140, 410 |
| NlaIV | GGNNCC | 1 cut(s) | 309 |
| NmuCI | GTSAC | 1 cut(s) | 466 |
| PaqCI | CACCTGC | 1 cut(s) | 346 |
| PfeI | GAWTC | 2 cut(s) | 257, 415 |
| Pfl23II | CGTACG | 1 cut(s) | 320 |
| Ppu21I | YACGTR | 1 cut(s) | 324 |
| Psp124BI | GAGCTC | 1 cut(s) | 171 |
| PspLI | CGTACG | 1 cut(s) | 320 |
| PspN4I | GGNNCC | 1 cut(s) | 309 |
| RsaI | GTAC | 1 cut(s) | 322 |
| RsaNI | GTAC | 1 cut(s) | 321 |
| RseI | CAYNNNNRTG | 2 cut(s) | 15, 211 |
| SacI | GAGCTC | 1 cut(s) | 171 |
| SaqAI | TTAA | 1 cut(s) | 129 |
| Sau3AI | GATC | 2 cut(s) | 140, 410 |
| ScrFI | CCNGG | 1 cut(s) | 316 |
| SduI | GDGCHC | 1 cut(s) | 171 |
| SetI | ASST | 8 cut(s) | 112, 117, 126, 171, 200, 326, 360, 440 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 15, 211 |
| SmlI | CTYRAG | 2 cut(s) | 170, 383 |
| SmoI | CTYRAG | 2 cut(s) | 170, 383 |
| SnaBI | TACGTA | 1 cut(s) | 324 |
| SpeI | ACTAGT | 1 cut(s) | 329 |
| Sse9I | AATT | 4 cut(s) | 31, 57, 175, 229 |
| SspMI | CTAG | 1 cut(s) | 330 |
| SstI | GAGCTC | 1 cut(s) | 171 |
| StyD4I | CCNGG | 1 cut(s) | 314 |
| TaiI | ACGT | 1 cut(s) | 326 |
| TaqI | TCGA | 3 cut(s) | 6, 143, 413 |
| TasI | AATT | 4 cut(s) | 31, 57, 175, 229 |
| TfiI | GAWTC | 2 cut(s) | 257, 415 |
| Tru1I | TTAA | 1 cut(s) | 129 |
| Tru9I | TTAA | 1 cut(s) | 129 |
| TseFI | GTSAC | 1 cut(s) | 466 |
| Tsp45I | GTSAC | 1 cut(s) | 466 |
| TspDTI | ATGAA | 3 cut(s) | 405, 407, 458 |
| XapI | RAATTY | 2 cut(s) | 57, 175 |
| XmiI | GTMKAC | 2 cut(s) | 21, 326 |
| XspI | CTAG | 1 cut(s) | 330 |