Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008890

Physical Location & Seq

Genomic Coordinates Reverse (-)

27260167 .. 27260598

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG290600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCTATTGTTCGAAAGAAAATAGTAATGTTGGTCATCACCATCATGCTCGGGACTTTGGCAATTGCATCATCCCAAGTACTACCATCTGAAAAATACAAGAAATCCACGATCAATATTACGCAAAAGTTTGAAGAGTGGATGGTTGAGCATAATCGTGTCTACTCCAATAATTCAGAAAAGGAGAAGCGTTACGAAATTTTCAAGAAAAACTATGAGCAAATGCGAGCCAAGTATAACAATACTGAACCTGAGCTGAACATATTTGGTGATCAAACCAAGGATGAACTCCCCAAAGGTTGCATGAAAATACCGGAGATTTATTACCGTTACAAAAGTTGGGTATATGAAGGAGGTGTCACTAGAGGAATTAGACGGCAACATGGCGGTAAGAATTATAATTACGTCGCAACTACAGTGCTTAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000746 GO:0000747 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009897 GO:0009986 GO:0009987 GO:0016020 GO:0016787 GO:0019538 GO:0019953 GO:0022414 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0044764 GO:0051603 GO:0051704 GO:0070011 GO:0071704 GO:0071944 GO:0098552 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04380 ko04612 ko04620 ko04621 ko04924 ko05152 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04380 map04612 map04620 map04621 map04924 map05152 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

143

Amino Acids

16.9

Weight (kDa)

9.54

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	44 - 97	1.2e-09	Cathepsin propeptide inhibitor domain (I29)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008890)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G113800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0096291 RchiOBHm_Chr6g0264751 RchiOBHm_Chr6g0275001
rosa_laevigata	RLG00000002574 RLG00000016632
rosa_multiflora	Rmu_co8275375.1_g000001 Rmu_co8431381.1_g000001 Rmu_sc0000692.1_g000006 Rmu_sc0005996.1_g000021
rosa_roxburghii	Rroxscaffold_3G00243270
rosa_rugosa	Rorug02G0057500
rosa_samantha	Rh2AG104300 Rh2BG106400 Rh2CG108300 Rh2DG107100 Rh7AG298500 Rh7AG298900 Rh7BG289400 Rh7BG290600 Rh7CG318400 Rh7DG300400
rosa_wichuraiana	Rw7G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	1 cut(s)	387
AcsI	RAATTY	1 cut(s)	198
AfaI	GTAC	1 cut(s)	81
AgsI	TTSAA	2 cut(s)	134, 205
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Ama87I	CYCGRG	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	31, 281
AsuII	TTCGAA	1 cut(s)	13
AvaI	CYCGRG	1 cut(s)	50
BccI	CCATC	3 cut(s)	50, 94, 136
BceAI	ACGGC	1 cut(s)	392
BclI	TGATCA	1 cut(s)	271
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	414
BmcAI	AGTACT	1 cut(s)	81
BmeT110I	CYCGRG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	279
BsaWI	WCCGGW	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	3 cut(s)	71, 147, 289
BseMII	CTCAG	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	67
BsoBI	CYCGRG	1 cut(s)	50
Bsp119I	TTCGAA	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	111, 271
BspACI	CCGC	1 cut(s)	387
BspCNI	CTCAG	1 cut(s)	244
BspT104I	TTCGAA	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	2 cut(s)	111, 271
BssT1I	CCWWGG	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	329, 418
Bst6I	CTCTTC	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	252
BstF5I	GGATG	3 cut(s)	71, 147, 289
BstKTI	GATC	2 cut(s)	114, 274
BstMBI	GATC	2 cut(s)	111, 271
BstSFI	CTRYAG	1 cut(s)	414
BtsCI	GGATG	3 cut(s)	71, 147, 289
BtsIMutI	CAGTG	1 cut(s)	423
Cac8I	GCNNGC	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	3 cut(s)	46, 304, 383
CviJI	RGCY	3 cut(s)	5, 230, 256
CviKI_1	RGCY	3 cut(s)	5, 230, 256
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	113, 273
DpnII	GATC	2 cut(s)	111, 271
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	3 cut(s)	49, 307, 386
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	3 cut(s)	45, 303, 382
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	1 cut(s)	162
FokI	GGATG	3 cut(s)	58, 154, 296
FspBI	CTAG	1 cut(s)	363
HapII	CCGG	1 cut(s)	314
Hin1II	CATG	3 cut(s)	49, 307, 386
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	2 cut(s)	31, 281
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	2 cut(s)	91, 178
Hpy188III	TCNNGA	2 cut(s)	52, 205
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	2 cut(s)	329, 418
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	2 cut(s)	68, 303
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	49, 307, 386
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	2 cut(s)	111, 271
LpnPI	CCDG	2 cut(s)	264, 327
LweI	GCATC	1 cut(s)	77
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	3 cut(s)	191, 329, 358
MalI	GATC	2 cut(s)	113, 273
MboI	GATC	2 cut(s)	111, 271
MboII	GAAGA	1 cut(s)	146
MfeI	CAATTG	1 cut(s)	63
MluCI	AATT	6 cut(s)	63, 172, 198, 369, 394, 400
MnlI	CCTC	2 cut(s)	347, 359
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	2 cut(s)	44, 156
MspI	CCGG	1 cut(s)	314
MunI	CAATTG	1 cut(s)	63
NdeII	GATC	2 cut(s)	111, 271
NlaIII	CATG	3 cut(s)	49, 307, 386
NmuCI	GTSAC	1 cut(s)	358
NspV	TTCGAA	1 cut(s)	13
PsiI	TTATAA	1 cut(s)	399
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
RseI	CAYNNNNRTG	2 cut(s)	44, 156
SaqAI	TTAA	1 cut(s)	423
Sau3AI	GATC	2 cut(s)	111, 271
ScaI	AGTACT	1 cut(s)	81
SetI	ASST	5 cut(s)	253, 258, 301, 358, 408
SfaNI	GCATC	1 cut(s)	77
SfcI	CTRYAG	1 cut(s)	414
SfuI	TTCGAA	1 cut(s)	13
SmiMI	CAYNNNNRTG	2 cut(s)	44, 156
Sse9I	AATT	6 cut(s)	63, 172, 198, 369, 394, 400
SsiI	CCGC	1 cut(s)	387
SspI	AATATT	1 cut(s)	118
SspMI	CTAG	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	329, 418
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	1 cut(s)	13
TasI	AATT	6 cut(s)	63, 172, 198, 369, 394, 400
TatI	WGTACW	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	1 cut(s)	423
TseFI	GTSAC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	3 cut(s)	300, 320, 363
TspRI	CASTG	1 cut(s)	423
XapI	RAATTY	1 cut(s)	198
XmiI	GTMKAC	1 cut(s)	162
XspI	CTAG	1 cut(s)	363
ZrmI	AGTACT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.