Rroxscaffold_3G00243270

Zingipain-2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008890
Physical Location & Seq
Reverse (-)
35799653 .. 35803187
3535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00243270.1

Sequence Viewer

Length: 750 bp
ATGGATTTGAGGCGGGCGGCGGCGGTGGTTTTGGGGAGGGGGGCTTGGGGTTTAAGAGGTAGAAGCGACGAAGTGAAGGGAAGGGTGAGGAGTGGAAACACTTGTTGGGCTTTTACAGCAGCAGCAGCAATCGAAGGAATTGTAAAAATTGAAAAAGGTGAATTAGTTACATTGTCTCCTCAACAAATTGTAGACTGCACTAGACCTCGACGGAAGTATAGAGAGCTATGGGGACTCAATGGCACATATGGCGGTGGTTACCCAGAAGGCGCGTTTGAATATGTATCGGACTACGGAATCAACCGGGAGATCACTTACCCATTCATCGGTAGGGACCAACCATGCAACGCCAAATTGGAAAAAAATCCTGATGCGCTTATAGCAGGTTACTCAGGCCTACCTGCGAATGATGAAAGTCTTATGAAGAAATTTGTGGCAAGACAACCGATCGCAGCCGGAATGGAGGTCACCGATGAATTCATTCATCACAAAGGTGGTGTATACAAAGATCCGCTTAGAGAATGTGGAAGATTACCAATGGTAAACCGTAGCCTTCACGCTGTTACAATTGTTGGGTACGGGACAGATGAAGATGACACAGACTACTGGTTAGTGAAGAATTCTTGGGGCACGGACTGGGGTAGAGAAGGTGGATATTTCCGAATTCAAAGAAACGTGAATAAGCCAGGTGGTTTATGTAACATTGCAACATGGCCTTCCTACCCGTTTATCTCTCGCGATCACCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

249

Amino Acids

27.78

Weight (kDa)

8.53

Isoelectric Point (pI)

36.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 33 - 242 2.1e-50 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 374, 409
AccI GTMKAC 2 cut(s) 192, 501
AccII CGCG 2 cut(s) 272, 738
AciI CCGC 6 cut(s) 13, 17, 20, 23, 252, 512
AclWI GGATC 1 cut(s) 503
AcsI RAATTY 4 cut(s) 428, 476, 619, 663
AfaI GTAC 1 cut(s) 578
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 3 cut(s) 152, 278, 668
AjnI CCWGG 1 cut(s) 685
AjuI GAANNNNNNNTTGG 2 cut(s) 88, 120
AleI CACNNNNGTG 1 cut(s) 492
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 1 cut(s) 503
AoxI GGCC 2 cut(s) 394, 713
ApeKI GCWGC 4 cut(s) 119, 122, 125, 452
ApoI RAATTY 4 cut(s) 428, 476, 619, 663
Asp700I GAANNNNTTC 1 cut(s) 480
AspLEI GCGC 2 cut(s) 272, 376
AspS9I GGNCC 1 cut(s) 334
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 4 cut(s) 97, 170, 460, 734
AvaII GGWCC 1 cut(s) 334
BaeGI GKGCMC 1 cut(s) 632
BbvI GCAGC 4 cut(s) 131, 134, 137, 464
BciT130I CCWGG 1 cut(s) 687
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 1 cut(s) 201
BfuAI ACCTGC 2 cut(s) 374, 409
BisI GCNGC 6 cut(s) 18, 21, 120, 123, 126, 453
BlsI GCNGC 6 cut(s) 19, 22, 121, 124, 127, 454
Bme1390I CCNGG 2 cut(s) 305, 687
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 334
BmiI GGNNCC 1 cut(s) 335
BmrFI CCNGG 2 cut(s) 305, 687
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 1 cut(s) 361
BmuI ACTGGG 1 cut(s) 646
BpuMI CCSGG 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 2 cut(s) 611, 641
Bse3DI GCAATG 1 cut(s) 702
BseBI CCWGG 1 cut(s) 687
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMI GCAATG 1 cut(s) 702
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 2 cut(s) 611, 641
BseRI GAGGAG 2 cut(s) 103, 168
BseSI GKGCMC 1 cut(s) 632
BseXI GCAGC 4 cut(s) 131, 134, 137, 464
BsgI GTGCAG 1 cut(s) 181
Bsh1236I CGCG 2 cut(s) 272, 738
Bsh1285I CGRYCG 1 cut(s) 450
BshFI GGCC 2 cut(s) 396, 715
BsiEI CGRYCG 1 cut(s) 450
BsiSI CCGG 2 cut(s) 304, 456
BslFI GGGAC 3 cut(s) 246, 347, 595
BslI CCNNNNNNNGG 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 3 cut(s) 246, 347, 595
BsnI GGCC 2 cut(s) 396, 715
Bsp1286I GDGCHC 1 cut(s) 632
Bsp143I GATC 4 cut(s) 309, 447, 508, 739
Bsp68I TCGCGA 1 cut(s) 738
BspACI CCGC 6 cut(s) 13, 17, 20, 23, 252, 512
BspANI GGCC 2 cut(s) 396, 715
BspCNI CTCAG 1 cut(s) 404
BspFNI CGCG 2 cut(s) 272, 738
BspLI GGNNCC 1 cut(s) 335
BspMI ACCTGC 2 cut(s) 374, 409
BspPI GGATC 1 cut(s) 503
BsrDI GCAATG 1 cut(s) 702
BsrI ACTGG 2 cut(s) 611, 641
BssMI GATC 4 cut(s) 309, 447, 508, 739
BssNAI GTATAC 1 cut(s) 502
Bst1107I GTATAC 1 cut(s) 502
Bst2UI CCWGG 1 cut(s) 687
Bst4CI ACNGT 1 cut(s) 548
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 2 cut(s) 391, 515
BstEII GGTNACC 2 cut(s) 257, 466
BstFNI CGCG 2 cut(s) 272, 738
BstHHI GCGC 2 cut(s) 272, 376
BstKTI GATC 4 cut(s) 312, 450, 511, 742
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 4 cut(s) 309, 447, 508, 739
BstMCI CGRYCG 1 cut(s) 450
BstMWI GCNNNNNNNGC 4 cut(s) 116, 125, 249, 380
BstNI CCWGG 1 cut(s) 687
BstPI GGTNACC 2 cut(s) 257, 466
BstSCI CCNGG 2 cut(s) 303, 685
BstSLI GKGCMC 1 cut(s) 632
BstUI CGCG 2 cut(s) 272, 738
BstV1I GCAGC 4 cut(s) 131, 134, 137, 464
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
BstZ17I GTATAC 1 cut(s) 502
BsuRI GGCC 2 cut(s) 396, 715
BtuMI TCGCGA 1 cut(s) 738
BveI ACCTGC 2 cut(s) 374, 409
Cac8I GCNNGC 1 cut(s) 15
CfoI GCGC 2 cut(s) 272, 376
Cfr13I GGNCC 1 cut(s) 334
Csp6I GTAC 1 cut(s) 577
CviAII CATG 2 cut(s) 342, 711
CviJI RGCY 8 cut(s) 44, 110, 226, 396, 455, 552, 685, 715
CviKI_1 RGCY 8 cut(s) 44, 110, 226, 396, 455, 552, 685, 715
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 2 cut(s) 391, 515
DpnI GATC 4 cut(s) 311, 449, 510, 741
DpnII GATC 4 cut(s) 309, 447, 508, 739
Eco147I AGGCCT 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 334
Eco91I GGTNACC 2 cut(s) 257, 466
EcoO65I GGTNACC 2 cut(s) 257, 466
EcoRI GAATTC 3 cut(s) 476, 619, 663
EcoRII CCWGG 1 cut(s) 685
FaeI CATG 2 cut(s) 345, 714
FalI AAGNNNNNCTT 2 cut(s) 498, 530
FaqI GGGAC 3 cut(s) 246, 347, 595
FatI CATG 2 cut(s) 341, 710
FauI CCCGC 1 cut(s) 6
FauNDI CATATG 1 cut(s) 247
FblI GTMKAC 2 cut(s) 192, 501
Fnu4HI GCNGC 6 cut(s) 18, 21, 120, 123, 126, 453
Fsp4HI GCNGC 6 cut(s) 18, 21, 120, 123, 126, 453
FspBI CTAG 1 cut(s) 201
GlaI GCGC 2 cut(s) 271, 375
GluI GCNGC 6 cut(s) 18, 21, 120, 123, 126, 453
HaeIII GGCC 2 cut(s) 396, 715
HapII CCGG 2 cut(s) 304, 456
HhaI GCGC 2 cut(s) 272, 376
Hin1II CATG 2 cut(s) 345, 714
Hin6I GCGC 2 cut(s) 270, 374
HinP1I GCGC 2 cut(s) 270, 374
HinfI GANTC 2 cut(s) 234, 297
HpaII CCGG 2 cut(s) 304, 456
HphI GGTGA 4 cut(s) 97, 170, 460, 734
Hpy166II GTNNAC 3 cut(s) 193, 502, 544
Hpy188I TCNGA 3 cut(s) 289, 662, 749
Hpy188III TCNNGA 2 cut(s) 368, 737
Hpy8I GTNNAC 3 cut(s) 193, 502, 544
Hpy99I CGWCG 2 cut(s) 71, 213
HpyAV CCTTC 7 cut(s) 70, 75, 128, 260, 563, 641, 726
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4IV ACGT 1 cut(s) 675
HpyCH4V TGCA 3 cut(s) 198, 345, 707
HpyF10VI GCNNNNNNNGC 4 cut(s) 116, 125, 249, 380
HpyF3I CTNAG 2 cut(s) 391, 515
HpySE526I ACGT 1 cut(s) 675
Hsp92II CATG 2 cut(s) 345, 714
HspAI GCGC 2 cut(s) 270, 374
Kzo9I GATC 4 cut(s) 309, 447, 508, 739
Lsp1109I GCAGC 4 cut(s) 131, 134, 137, 464
LweI GCATC 1 cut(s) 361
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 675
MaeIII GTNAC 6 cut(s) 166, 257, 386, 466, 562, 698
MalI GATC 4 cut(s) 311, 449, 510, 741
MboI GATC 4 cut(s) 309, 447, 508, 739
MboII GAAGA 4 cut(s) 436, 540, 602, 628
MfeI CAATTG 1 cut(s) 567
MflI RGATCY 1 cut(s) 508
MhlI GDGCHC 1 cut(s) 632
MlyI GAGTC 1 cut(s) 228
MnlI CCTC 7 cut(s) 3, 30, 50, 81, 189, 216, 457
MroXI GAANNNNTTC 1 cut(s) 480
MseI TTAA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 492
MspI CCGG 2 cut(s) 304, 456
MspR9I CCNGG 2 cut(s) 305, 687
MunI CAATTG 1 cut(s) 567
MvaI CCWGG 1 cut(s) 687
MvnI CGCG 2 cut(s) 272, 738
MwoI GCNNNNNNNGC 4 cut(s) 116, 125, 249, 380
NciI CCSGG 1 cut(s) 305
NdeI CATATG 1 cut(s) 247
NdeII GATC 4 cut(s) 309, 447, 508, 739
NlaIII CATG 2 cut(s) 345, 714
NlaIV GGNNCC 1 cut(s) 335
NmuCI GTSAC 1 cut(s) 466
NruI TCGCGA 1 cut(s) 738
OliI CACNNNNGTG 1 cut(s) 492
PceI AGGCCT 1 cut(s) 396
PdmI GAANNNNTTC 1 cut(s) 480
PfeI GAWTC 1 cut(s) 297
PkrI GCNGC 6 cut(s) 19, 22, 121, 124, 127, 454
Ple19I CGATCG 1 cut(s) 450
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 685
PspEI GGTNACC 2 cut(s) 257, 466
PspGI CCWGG 1 cut(s) 685
PspN4I GGNNCC 1 cut(s) 335
PspPI GGNCC 1 cut(s) 334
PsuI RGATCY 1 cut(s) 508
PvuI CGATCG 1 cut(s) 450
RruI TCGCGA 1 cut(s) 738
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
RseI CAYNNNNRTG 1 cut(s) 492
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 6 cut(s) 18, 21, 120, 123, 126, 453
Sau3AI GATC 4 cut(s) 309, 447, 508, 739
Sau96I GGNCC 1 cut(s) 334
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 2 cut(s) 305, 687
SduI GDGCHC 1 cut(s) 632
SfaNI GCATC 1 cut(s) 361
SinI GGWCC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 492
SseBI AGGCCT 1 cut(s) 396
SsiI CCGC 6 cut(s) 13, 17, 20, 23, 252, 512
SspMI CTAG 1 cut(s) 201
StuI AGGCCT 1 cut(s) 396
StyD4I CCNGG 2 cut(s) 303, 685
TaaI ACNGT 1 cut(s) 548
TaiI ACGT 1 cut(s) 678
TaqI TCGA 2 cut(s) 132, 208
TauI GCSGC 2 cut(s) 20, 23
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 4 cut(s) 119, 122, 125, 452
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 7 cut(s) 313, 426, 437, 469, 473, 489, 603
TspGWI ACGGA 3 cut(s) 226, 309, 647
VpaK11BI GGWCC 1 cut(s) 334
XapI RAATTY 4 cut(s) 428, 476, 619, 663
XmiI GTMKAC 2 cut(s) 192, 501
XmnI GAANNNNTTC 1 cut(s) 480
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.