Rh2BG106400

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0008890
Physical Location & Seq
Reverse (-)
8923858 .. 8925139
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG106400.1

Sequence Viewer

Length: 468 bp
ATGGCTCTCATTGTTTCAGAGAAACCTCTTGACATAGGAATGTCGGTCATCACCATCATGCTCGGGACTTGGCAGTATATATGTATGGCGTTGGGGAGCCAGGGCACAATCGGGGGTGGTTATCCAAATCGGGGGTTTGAATATGCAGCGGAGCACGCAATCAACCGGGAGAACAGTTACCCAATCATCGGTAGGAACCAACCATGCAAAGGCAAATTGGAAAGAAATCCTTATGTGCAGATAAGTGGTTACATGAACATACCACCAAATAATGAAAAATATTGTATTTTTGTGGCTGAACAACCGACTGTAGCCGGAATGGAGGTCATCGAGACATTTTATATTGATTACAAATATGGTATCTACACCGATAAAAATAGAGAATGTGGAATATTACCGATGGATAACCGTACCTACCATGCTGTTACAATCGTAGGGAATCGGACAGAAGATGACACAAACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

155

Amino Acids

17.5

Weight (kDa)

5.15

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 38 - 155 3.6e-13 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 149
AfaI GTAC 1 cut(s) 412
AfiI CCNNNNNNNGG 3 cut(s) 131, 188, 209
AgsI TTSAA 1 cut(s) 140
AjnI CCWGG 1 cut(s) 99
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 1 cut(s) 326
Ama87I CYCGRG 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 146
AsuC2I CCSGG 1 cut(s) 167
AsuHPI GGTGA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 62
BaeGI GKGCMC 1 cut(s) 107
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 158
BccI CCATC 2 cut(s) 62, 394
BciT130I CCWGG 1 cut(s) 101
BcnI CCSGG 1 cut(s) 167
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 1 cut(s) 466
BfmI CTRYAG 1 cut(s) 309
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 2 cut(s) 101, 167
BmeT110I CYCGRG 1 cut(s) 62
BmiI GGNNCC 2 cut(s) 98, 197
BmrFI CCNGG 2 cut(s) 101, 167
BpuMI CCSGG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 188, 209
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 100
BseLI CCNNNNNNNGG 3 cut(s) 131, 188, 209
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 1 cut(s) 158
BsgI GTGCAG 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 156
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 2 cut(s) 166, 315
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 3 cut(s) 131, 188, 209
BsmAI GTCTC 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 107, 156
BspACI CCGC 1 cut(s) 149
BspLI GGNNCC 2 cut(s) 98, 197
BssECI CCNNGG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 3 cut(s) 176, 310, 410
BstC8I GCNNGC 1 cut(s) 156
BstMAI GTCTC 1 cut(s) 326
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 2 cut(s) 99, 165
BstSFI CTRYAG 1 cut(s) 309
BstSLI GKGCMC 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 411
CviAII CATG 4 cut(s) 58, 204, 253, 419
CviJI RGCY 4 cut(s) 5, 99, 296, 314
CviKI_1 RGCY 4 cut(s) 5, 99, 296, 314
CviQI GTAC 1 cut(s) 411
Eco88I CYCGRG 1 cut(s) 62
EcoRII CCWGG 1 cut(s) 99
FaeI CATG 4 cut(s) 61, 207, 256, 422
FalI AAGNNNNNCTT 2 cut(s) 214, 246
FaqI GGGAC 1 cut(s) 79
FatI CATG 4 cut(s) 57, 203, 252, 418
Fnu4HI GCNGC 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 1 cut(s) 466
GluI GCNGC 1 cut(s) 147
HapII CCGG 2 cut(s) 166, 315
Hin1II CATG 4 cut(s) 61, 207, 256, 422
HinfI GANTC 1 cut(s) 439
HpaII CCGG 2 cut(s) 166, 315
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 19, 444
Hpy188III TCNNGA 3 cut(s) 29, 64, 331
HpyCH4III ACNGT 3 cut(s) 176, 310, 410
HpyCH4V TGCA 3 cut(s) 146, 207, 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
Hsp92II CATG 4 cut(s) 61, 207, 256, 422
LmnI GCTCC 2 cut(s) 96, 151
LpnPI CCDG 4 cut(s) 86, 113, 179, 328
Lsp1109I GCAGC 1 cut(s) 158
MaeI CTAG 1 cut(s) 466
MaeIII GTNAC 3 cut(s) 176, 248, 424
MboII GAAGA 1 cut(s) 461
MhlI GDGCHC 2 cut(s) 107, 156
MluCI AATT 1 cut(s) 215
MnlI CCTC 2 cut(s) 36, 316
MslI CAYNNNNRTG 2 cut(s) 38, 56
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 2 cut(s) 166, 315
MspR9I CCNGG 2 cut(s) 101, 167
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 155
NciI CCSGG 1 cut(s) 167
NlaIII CATG 4 cut(s) 61, 207, 256, 422
NlaIV GGNNCC 2 cut(s) 98, 197
PfeI GAWTC 1 cut(s) 439
PkrI GCNGC 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 98, 197
RsaI GTAC 1 cut(s) 412
RsaNI GTAC 1 cut(s) 411
RseI CAYNNNNRTG 2 cut(s) 38, 56
SatI GCNGC 1 cut(s) 147
ScrFI CCNGG 2 cut(s) 101, 167
SduI GDGCHC 2 cut(s) 107, 156
SetI ASST 3 cut(s) 28, 327, 416
SfcI CTRYAG 1 cut(s) 309
SmiMI CAYNNNNRTG 2 cut(s) 38, 56
Sse9I AATT 1 cut(s) 215
SsiI CCGC 1 cut(s) 149
SspI AATATT 2 cut(s) 281, 393
SspMI CTAG 1 cut(s) 466
StyD4I CCNGG 2 cut(s) 99, 165
TaaI ACNGT 3 cut(s) 176, 310, 410
TaqI TCGA 1 cut(s) 330
TaqII GACCGA 1 cut(s) 34
TasI AATT 1 cut(s) 215
TfiI GAWTC 1 cut(s) 439
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 2 cut(s) 269, 288
XspI CTAG 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.