Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000692.1

Orthogroup ID

OG0008890

Physical Location & Seq

Genomic Coordinates Forward (+)

22261 .. 23047

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000692.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgttggtcatcaccatcatgctcgggactttcatgctcgggactttggcaattacatcagaccaagtactaccatctgaaaaatacaagaaatccacgatcaatattacgcaaaagtttgaagagtggatggtcgagcataatcgtgtctactccaataattcagaaaaggagaagcgttacaaaatattcaagaaaaactacgagcgaatgcgagccaagtataataatactgaacctgagctgaacatatttggtgataaaaccgaggatgaactccccaaaggtggcatgaaaataccgaagattccttactgttctttgtttcattattttgttcctgaatacaaaatttcggtatatgaaggagctgtaagaattagacggcaacatggcgggcagatgctttatgtggataagccatatgaagatgacacagacgggactgaggaagatgacatagacttctggttagtgaagaattcttggggcacgacctgcggtagaaaaggtggatacttccgaattaaaagaaatgtggataagccaggtggttttatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

187

Amino Acids

21.99

Weight (kDa)

8.66

Isoelectric Point (pI)

31.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008890)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G113800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0096291 RchiOBHm_Chr6g0264751 RchiOBHm_Chr6g0275001
rosa_laevigata	RLG00000002574 RLG00000016632
rosa_multiflora	Rmu_co8275375.1_g000001 Rmu_co8431381.1_g000001 Rmu_sc0000692.1_g000006 Rmu_sc0005996.1_g000021
rosa_roxburghii	Rroxscaffold_3G00243270
rosa_rugosa	Rorug02G0057500
rosa_samantha	Rh2AG104300 Rh2BG106400 Rh2CG108300 Rh2DG107100 Rh7AG298500 Rh7AG298900 Rh7BG289400 Rh7BG290600 Rh7CG318400 Rh7DG300400
rosa_wichuraiana	Rw7G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	506
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	2 cut(s)	396, 501
AcsI	RAATTY	2 cut(s)	351, 481
AfaI	GTAC	1 cut(s)	69
AfiI	CCNNNNNNNGG	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	122, 193
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	2 cut(s)	244, 371
AluI	AGCT	2 cut(s)	244, 371
Ama87I	CYCGRG	2 cut(s)	23, 38
ApoI	RAATTY	2 cut(s)	351, 481
AsuHPI	GGTGA	2 cut(s)	4, 269
AvaI	CYCGRG	2 cut(s)	23, 38
BaeGI	GKGCMC	1 cut(s)	494
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 328
BccI	CCATC	3 cut(s)	23, 82, 124
BceAI	ACGGC	1 cut(s)	401
BciT130I	CCWGG	1 cut(s)	549
BciVI	GTATCC	1 cut(s)	509
BfuAI	ACCTGC	1 cut(s)	506
BfuI	GTATCC	1 cut(s)	509
BmcAI	AGTACT	1 cut(s)	69
Bme1390I	CCNGG	1 cut(s)	549
BmeT110I	CYCGRG	2 cut(s)	23, 38
BmrFI	CCNGG	1 cut(s)	549
BmsI	GCATC	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	2 cut(s)	135, 277
BseLI	CCNNNNNNNGG	1 cut(s)	287
BseMII	CTCAG	2 cut(s)	231, 438
BseSI	GKGCMC	1 cut(s)	494
BsiHKCI	CYCGRG	2 cut(s)	23, 38
BslFI	GGGAC	3 cut(s)	40, 55, 457
BslI	CCNNNNNNNGG	1 cut(s)	287
BsmFI	GGGAC	3 cut(s)	40, 55, 457
BsmI	GAATGC	1 cut(s)	216
BsoBI	CYCGRG	2 cut(s)	23, 38
Bsp1286I	GDGCHC	1 cut(s)	494
Bsp143I	GATC	1 cut(s)	99
BspACI	CCGC	2 cut(s)	396, 501
BspCNI	CTCAG	2 cut(s)	232, 439
BspMI	ACCTGC	1 cut(s)	506
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	99
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	117
BstAPI	GCANNNNNTGC	1 cut(s)	498
BstC8I	GCNNGC	2 cut(s)	216, 398
BstDEI	CTNAG	2 cut(s)	240, 447
BstF5I	GGATG	2 cut(s)	135, 277
BstKTI	GATC	1 cut(s)	102
BstMBI	GATC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	498
BstNI	CCWGG	1 cut(s)	549
BstSCI	CCNGG	1 cut(s)	547
BstSLI	GKGCMC	1 cut(s)	494
BsuI	GTATCC	1 cut(s)	509
BtsCI	GGATG	2 cut(s)	135, 277
BveI	ACCTGC	1 cut(s)	506
Cac8I	GCNNGC	2 cut(s)	216, 398
Csp6I	GTAC	1 cut(s)	68
CviAII	CATG	4 cut(s)	19, 34, 292, 392
CviJI	RGCY	5 cut(s)	218, 244, 371, 421, 547
CviKI_1	RGCY	5 cut(s)	218, 244, 371, 421, 547
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	2 cut(s)	240, 447
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco88I	CYCGRG	2 cut(s)	23, 38
EcoRI	GAATTC	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	547
FaeI	CATG	4 cut(s)	22, 37, 295, 395
FaqI	GGGAC	3 cut(s)	40, 55, 457
FatI	CATG	4 cut(s)	18, 33, 291, 391
FauI	CCCGC	1 cut(s)	389
FauNDI	CATATG	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	150
FokI	GGATG	2 cut(s)	142, 284
Hin1II	CATG	4 cut(s)	22, 37, 295, 395
HinfI	GANTC	1 cut(s)	307
HphI	GGTGA	2 cut(s)	4, 269
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	4 cut(s)	61, 79, 166, 524
Hpy188III	TCNNGA	4 cut(s)	25, 40, 193, 341
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	359
HpyCH4III	ACNGT	1 cut(s)	317
HpyF10VI	GCNNNNNNNGC	1 cut(s)	498
HpyF3I	CTNAG	2 cut(s)	240, 447
Hsp92II	CATG	4 cut(s)	22, 37, 295, 395
Kzo9I	GATC	1 cut(s)	99
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	5 cut(s)	252, 354, 454, 511, 534
LweI	GCATC	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	1 cut(s)	101
MboI	GATC	1 cut(s)	99
MboII	GAAGA	5 cut(s)	134, 316, 440, 464, 490
MhlI	GDGCHC	1 cut(s)	494
MluCI	AATT	6 cut(s)	51, 160, 351, 378, 481, 525
MnlI	CCTC	2 cut(s)	262, 442
MseI	TTAA	1 cut(s)	528
MslI	CAYNNNNRTG	2 cut(s)	17, 144
MspR9I	CCNGG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	1 cut(s)	498
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	1 cut(s)	99
NlaIII	CATG	4 cut(s)	22, 37, 295, 395
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
RseI	CAYNNNNRTG	2 cut(s)	17, 144
SaqAI	TTAA	1 cut(s)	528
Sau3AI	GATC	1 cut(s)	99
ScaI	AGTACT	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	549
SduI	GDGCHC	1 cut(s)	494
SetI	ASST	7 cut(s)	241, 246, 289, 373, 500, 514, 553
SfaNI	GCATC	1 cut(s)	393
SmiMI	CAYNNNNRTG	2 cut(s)	17, 144
Sse9I	AATT	6 cut(s)	51, 160, 351, 378, 481, 525
SsiI	CCGC	2 cut(s)	396, 501
SspI	AATATT	2 cut(s)	106, 189
StyD4I	CCNGG	1 cut(s)	547
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	1 cut(s)	135
TasI	AATT	6 cut(s)	51, 160, 351, 378, 481, 525
TatI	WGTACW	1 cut(s)	67
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TspDTI	ATGAA	6 cut(s)	22, 288, 308, 317, 378, 441
XapI	RAATTY	2 cut(s)	351, 481
XmiI	GTMKAC	1 cut(s)	150
ZrmI	AGTACT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.