Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008890

Physical Location & Seq

Genomic Coordinates Forward (+)

20091173 .. 20092462

Gene Structure 1290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23745

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCTATTGTTCGAAAGAAAATAGTAATGTTGGTCATCACCATCATGCTCGGGACTTTGACAATTGCATCATCCCGAGTACTACCATCTGAAAAATACAAGAAATCTACTATCAATATCACGCAAAAGTTTGAAGAGTGGATGGTCGAGCATAACCGTGTCTACCCCAATAATTCAGAAAAGGTGAGGCGTTACAAAATTTTCAAGAAAAACTATGAGCAAATGCGAGCCAAGTATAACAATATTGAACCTGAGCTGAATATATTTGGTGATCAAACCGAGGATGAACTCCCCAAAGTTTGCATGAGATTACCAGAAGAATTGGAGATTTCTTACAGTCCTACTTCATTTGATTGGTTTGTTCCTGACTACAAAAATTGGGTATATGAAGGAGCTGTCACTGGAATTAGAGAGCAACGGGGCGATACTTGTTGGGCTTTTACAGCAGCAGCAGCAATCGAAGGAATTGTAAAAATTGAAAAAGGTGAATTAGTTACATTGTCTCCTCAACAAATTGTAGACTGTACTAGACCTCGACGGAAGTATAGAGAGCTATGGGGACTCAATGGCACATATGGCGGTGGTCACCCAGAAGGCGCGTTTGAATATGTATCGGACTACGGAATCAACAGGGAGATCACTTACCCATTCATCGGTAGGGACCAACCATGCAACGCCAAATTGGAAAAAAATCCTTATGCGCTTATAGCAGGTTACTCAGGCCTACCTGCGAATGATGAAAGTCTTATGAAGAAATTTGTGGCAAGACAACCGATCGCAGCCGGAATGGAGGTCACCGATGAATTCATTCATTACAAAGGTGGTGTATACAAAGATCCGCTTAGAGAATGTGGAAGATTACCAATGGTAAACCGTAGCCTTCACGCTGTTACAATTGTTGGGTACGGGACAGATGAAGATGACACAGACTACTGGTTAGTGAAGAATTCTTGGGGCACGGACTGGGGTAGAGAAGGTGGATATTTCCGAATTCAAAGAAACGTGAATAAGCCAGGTGGTTTATGTAACATTGCAACATGGCCTTCCTACCCGTTTATCTCTCGCGATCACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005788 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0070013 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

358

Amino Acids

41.14

Weight (kDa)

7.56

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	44 - 97	3.9e-09	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	122 - 351	3.6e-53	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008890)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G113800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0096291 RchiOBHm_Chr6g0264751 RchiOBHm_Chr6g0275001
rosa_laevigata	RLG00000002574 RLG00000016632
rosa_multiflora	Rmu_co8275375.1_g000001 Rmu_co8431381.1_g000001 Rmu_sc0000692.1_g000006 Rmu_sc0005996.1_g000021
rosa_roxburghii	Rroxscaffold_3G00243270
rosa_rugosa	Rorug02G0057500
rosa_samantha	Rh2AG104300 Rh2BG106400 Rh2CG108300 Rh2DG107100 Rh7AG298500 Rh7AG298900 Rh7BG289400 Rh7BG290600 Rh7CG318400 Rh7DG300400
rosa_wichuraiana	Rw7G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	701, 736
AccI	GTMKAC	3 cut(s)	162, 519, 828
AccII	CGCG	2 cut(s)	599, 1065
AciI	CCGC	2 cut(s)	579, 839
AclWI	GGATC	1 cut(s)	830
AcsI	RAATTY	5 cut(s)	198, 755, 803, 946, 990
AfaI	GTAC	3 cut(s)	81, 526, 905
AfiI	CCNNNNNNNGG	1 cut(s)	653
AgsI	TTSAA	6 cut(s)	134, 205, 248, 479, 605, 995
AjnI	CCWGG	1 cut(s)	1012
AluBI	AGCT	3 cut(s)	256, 395, 553
AluI	AGCT	3 cut(s)	256, 395, 553
Alw26I	GTCTC	1 cut(s)	507
AlwI	GGATC	1 cut(s)	830
Ama87I	CYCGRG	2 cut(s)	50, 75
AoxI	GGCC	2 cut(s)	721, 1040
ApeKI	GCWGC	4 cut(s)	446, 449, 452, 779
ApoI	RAATTY	5 cut(s)	198, 755, 803, 946, 990
Asp700I	GAANNNNTTC	1 cut(s)	807
AspLEI	GCGC	2 cut(s)	599, 703
AspS9I	GGNCC	1 cut(s)	661
AsuHPI	GGTGA	7 cut(s)	31, 196, 281, 497, 578, 787, 1061
AsuII	TTCGAA	1 cut(s)	13
AvaI	CYCGRG	2 cut(s)	50, 75
AvaII	GGWCC	1 cut(s)	661
BaeGI	GKGCMC	1 cut(s)	959
BbvI	GCAGC	4 cut(s)	458, 461, 464, 791
BccI	CCATC	3 cut(s)	50, 94, 136
BciT130I	CCWGG	1 cut(s)	1014
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	507
BfaI	CTAG	1 cut(s)	528
BfuAI	ACCTGC	2 cut(s)	701, 736
BisI	GCNGC	4 cut(s)	447, 450, 453, 780
BlsI	GCNGC	4 cut(s)	448, 451, 454, 781
BmcAI	AGTACT	1 cut(s)	81
Bme1390I	CCNGG	1 cut(s)	1014
Bme18I	GGWCC	1 cut(s)	661
BmeT110I	CYCGRG	2 cut(s)	50, 75
BmgT120I	GGNCC	1 cut(s)	661
BmiI	GGNNCC	1 cut(s)	662
BmrFI	CCNGG	1 cut(s)	1014
BmrI	ACTGGG	1 cut(s)	973
BmsI	GCATC	1 cut(s)	77
BmuI	ACTGGG	1 cut(s)	973
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	1 cut(s)	653
Bse1I	ACTGG	3 cut(s)	406, 938, 968
Bse3DI	GCAATG	1 cut(s)	1029
BseBI	CCWGG	1 cut(s)	1014
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	3 cut(s)	71, 147, 289
BseLI	CCNNNNNNNGG	1 cut(s)	653
BseMI	GCAATG	1 cut(s)	1029
BseMII	CTCAG	2 cut(s)	243, 732
BseNI	ACTGG	3 cut(s)	406, 938, 968
BseRI	GAGGAG	1 cut(s)	495
BseSI	GKGCMC	1 cut(s)	959
BseXI	GCAGC	4 cut(s)	458, 461, 464, 791
Bsh1236I	CGCG	2 cut(s)	599, 1065
Bsh1285I	CGRYCG	1 cut(s)	777
BshFI	GGCC	2 cut(s)	723, 1042
BsiEI	CGRYCG	1 cut(s)	777
BsiHKCI	CYCGRG	2 cut(s)	50, 75
BsiSI	CCGG	1 cut(s)	783
BslFI	GGGAC	4 cut(s)	67, 573, 674, 922
BslI	CCNNNNNNNGG	1 cut(s)	653
BsmAI	GTCTC	1 cut(s)	507
BsmFI	GGGAC	4 cut(s)	67, 573, 674, 922
BsnI	GGCC	2 cut(s)	723, 1042
BsoBI	CYCGRG	2 cut(s)	50, 75
Bsp119I	TTCGAA	1 cut(s)	13
Bsp1286I	GDGCHC	1 cut(s)	959
Bsp143I	GATC	5 cut(s)	271, 636, 774, 835, 1066
Bsp68I	TCGCGA	1 cut(s)	1065
BspACI	CCGC	2 cut(s)	579, 839
BspANI	GGCC	2 cut(s)	723, 1042
BspCNI	CTCAG	2 cut(s)	244, 731
BspFNI	CGCG	2 cut(s)	599, 1065
BspLI	GGNNCC	1 cut(s)	662
BspMI	ACCTGC	2 cut(s)	701, 736
BspPI	GGATC	1 cut(s)	830
BspT104I	TTCGAA	1 cut(s)	13
BsrDI	GCAATG	1 cut(s)	1029
BsrI	ACTGG	3 cut(s)	406, 938, 968
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	5 cut(s)	271, 636, 774, 835, 1066
BssNAI	GTATAC	1 cut(s)	829
Bst1107I	GTATAC	1 cut(s)	829
Bst2UI	CCWGG	1 cut(s)	1014
Bst4CI	ACNGT	4 cut(s)	158, 338, 524, 875
Bst6I	CTCTTC	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	3 cut(s)	252, 718, 842
BstEII	GGTNACC	2 cut(s)	584, 793
BstF5I	GGATG	3 cut(s)	71, 147, 289
BstFNI	CGCG	2 cut(s)	599, 1065
BstHHI	GCGC	2 cut(s)	599, 703
BstKTI	GATC	5 cut(s)	274, 639, 777, 838, 1069
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	5 cut(s)	271, 636, 774, 835, 1066
BstMCI	CGRYCG	1 cut(s)	777
BstMWI	GCNNNNNNNGC	4 cut(s)	443, 452, 576, 707
BstNI	CCWGG	1 cut(s)	1014
BstPI	GGTNACC	2 cut(s)	584, 793
BstSCI	CCNGG	1 cut(s)	1012
BstSLI	GKGCMC	1 cut(s)	959
BstUI	CGCG	2 cut(s)	599, 1065
BstV1I	GCAGC	4 cut(s)	458, 461, 464, 791
BstX2I	RGATCY	1 cut(s)	835
BstYI	RGATCY	1 cut(s)	835
BstZ17I	GTATAC	1 cut(s)	829
BsuRI	GGCC	2 cut(s)	723, 1042
BtsCI	GGATG	3 cut(s)	71, 147, 289
BtsIMutI	CAGTG	1 cut(s)	399
BtuMI	TCGCGA	1 cut(s)	1065
BveI	ACCTGC	2 cut(s)	701, 736
Cac8I	GCNNGC	1 cut(s)	228
CfoI	GCGC	2 cut(s)	599, 703
Cfr13I	GGNCC	1 cut(s)	661
Csp6I	GTAC	3 cut(s)	80, 525, 904
CviAII	CATG	4 cut(s)	46, 304, 669, 1038
CviQI	GTAC	3 cut(s)	80, 525, 904
DdeI	CTNAG	3 cut(s)	252, 718, 842
DpnI	GATC	5 cut(s)	273, 638, 776, 837, 1068
DpnII	GATC	5 cut(s)	271, 636, 774, 835, 1066
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Eco147I	AGGCCT	1 cut(s)	723
Eco47I	GGWCC	1 cut(s)	661
Eco88I	CYCGRG	2 cut(s)	50, 75
Eco91I	GGTNACC	2 cut(s)	584, 793
EcoO65I	GGTNACC	2 cut(s)	584, 793
EcoRI	GAATTC	3 cut(s)	803, 946, 990
EcoRII	CCWGG	1 cut(s)	1012
FaeI	CATG	4 cut(s)	49, 307, 672, 1041
FalI	AAGNNNNNCTT	2 cut(s)	825, 857
FaqI	GGGAC	4 cut(s)	67, 573, 674, 922
FatI	CATG	4 cut(s)	45, 303, 668, 1037
FauNDI	CATATG	1 cut(s)	574
FbaI	TGATCA	1 cut(s)	271
FblI	GTMKAC	3 cut(s)	162, 519, 828
Fnu4HI	GCNGC	4 cut(s)	447, 450, 453, 780
FokI	GGATG	3 cut(s)	58, 154, 296
Fsp4HI	GCNGC	4 cut(s)	447, 450, 453, 780
FspBI	CTAG	1 cut(s)	528
GlaI	GCGC	2 cut(s)	598, 702
GluI	GCNGC	4 cut(s)	447, 450, 453, 780
HaeIII	GGCC	2 cut(s)	723, 1042
HapII	CCGG	1 cut(s)	783
HhaI	GCGC	2 cut(s)	599, 703
Hin1II	CATG	4 cut(s)	49, 307, 672, 1041
Hin6I	GCGC	2 cut(s)	597, 701
HinP1I	GCGC	2 cut(s)	597, 701
HinfI	GANTC	2 cut(s)	561, 624
HpaII	CCGG	1 cut(s)	783
HphI	GGTGA	7 cut(s)	31, 196, 281, 497, 578, 787, 1061
Hpy166II	GTNNAC	4 cut(s)	163, 520, 829, 871
Hpy188I	TCNGA	5 cut(s)	91, 178, 616, 989, 1076
Hpy188III	TCNNGA	5 cut(s)	52, 75, 205, 365, 1064
Hpy8I	GTNNAC	4 cut(s)	163, 520, 829, 871
Hpy99I	CGWCG	1 cut(s)	540
HpyAV	CCTTC	6 cut(s)	383, 455, 587, 890, 968, 1053
HpyCH4III	ACNGT	4 cut(s)	158, 338, 524, 875
HpyCH4IV	ACGT	1 cut(s)	1002
HpyCH4V	TGCA	4 cut(s)	68, 303, 672, 1034
HpyF10VI	GCNNNNNNNGC	4 cut(s)	443, 452, 576, 707
HpyF3I	CTNAG	3 cut(s)	252, 718, 842
HpySE526I	ACGT	1 cut(s)	1002
Hsp92II	CATG	4 cut(s)	49, 307, 672, 1041
HspAI	GCGC	2 cut(s)	597, 701
Ksp22I	TGATCA	1 cut(s)	271
Kzo9I	GATC	5 cut(s)	271, 636, 774, 835, 1066
LmnI	GCTCC	1 cut(s)	392
Lsp1109I	GCAGC	4 cut(s)	458, 461, 464, 791
LweI	GCATC	1 cut(s)	77
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	1002
MaeIII	GTNAC	8 cut(s)	191, 397, 493, 584, 713, 793, 889, 1025
MalI	GATC	5 cut(s)	273, 638, 776, 837, 1068
MboI	GATC	5 cut(s)	271, 636, 774, 835, 1066
MboII	GAAGA	6 cut(s)	146, 329, 763, 867, 929, 955
MfeI	CAATTG	2 cut(s)	63, 894
MflI	RGATCY	1 cut(s)	835
MhlI	GDGCHC	1 cut(s)	959
MlyI	GAGTC	1 cut(s)	555
MnlI	CCTC	5 cut(s)	180, 274, 516, 543, 784
MroXI	GAANNNNTTC	1 cut(s)	807
MslI	CAYNNNNRTG	2 cut(s)	44, 156
MspI	CCGG	1 cut(s)	783
MspR9I	CCNGG	1 cut(s)	1014
MunI	CAATTG	2 cut(s)	63, 894
MvaI	CCWGG	1 cut(s)	1014
MvnI	CGCG	2 cut(s)	599, 1065
MwoI	GCNNNNNNNGC	4 cut(s)	443, 452, 576, 707
NdeI	CATATG	1 cut(s)	574
NdeII	GATC	5 cut(s)	271, 636, 774, 835, 1066
NlaIII	CATG	4 cut(s)	49, 307, 672, 1041
NlaIV	GGNNCC	1 cut(s)	662
NmuCI	GTSAC	3 cut(s)	397, 584, 793
NruI	TCGCGA	1 cut(s)	1065
NspV	TTCGAA	1 cut(s)	13
PceI	AGGCCT	1 cut(s)	723
PdmI	GAANNNNTTC	1 cut(s)	807
PfeI	GAWTC	1 cut(s)	624
PkrI	GCNGC	4 cut(s)	448, 451, 454, 781
Ple19I	CGATCG	1 cut(s)	777
PleI	GAGTC	1 cut(s)	555
PpsI	GAGTC	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	1012
PspEI	GGTNACC	2 cut(s)	584, 793
PspGI	CCWGG	1 cut(s)	1012
PspN4I	GGNNCC	1 cut(s)	662
PspPI	GGNCC	1 cut(s)	661
PsuI	RGATCY	1 cut(s)	835
PvuI	CGATCG	1 cut(s)	777
RruI	TCGCGA	1 cut(s)	1065
RsaI	GTAC	3 cut(s)	81, 526, 905
RsaNI	GTAC	3 cut(s)	80, 525, 904
RseI	CAYNNNNRTG	2 cut(s)	44, 156
SatI	GCNGC	4 cut(s)	447, 450, 453, 780
Sau3AI	GATC	5 cut(s)	271, 636, 774, 835, 1066
Sau96I	GGNCC	1 cut(s)	661
ScaI	AGTACT	1 cut(s)	81
SchI	GAGTC	1 cut(s)	555
ScrFI	CCNGG	1 cut(s)	1014
SduI	GDGCHC	1 cut(s)	959
SfaNI	GCATC	1 cut(s)	77
SfuI	TTCGAA	1 cut(s)	13
SinI	GGWCC	1 cut(s)	661
SmiMI	CAYNNNNRTG	2 cut(s)	44, 156
SseBI	AGGCCT	1 cut(s)	723
SsiI	CCGC	2 cut(s)	579, 839
SspI	AATATT	1 cut(s)	244
SspMI	CTAG	1 cut(s)	528
StuI	AGGCCT	1 cut(s)	723
StyD4I	CCNGG	1 cut(s)	1012
TaaI	ACNGT	4 cut(s)	158, 338, 524, 875
TaiI	ACGT	1 cut(s)	1005
TaqI	TCGA	4 cut(s)	13, 147, 459, 535
TatI	WGTACW	2 cut(s)	79, 524
TfiI	GAWTC	1 cut(s)	624
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	3 cut(s)	397, 584, 793
TseI	GCWGC	4 cut(s)	446, 449, 452, 779
Tsp45I	GTSAC	3 cut(s)	397, 584, 793
TspGWI	ACGGA	3 cut(s)	553, 636, 974
TspRI	CASTG	1 cut(s)	406
VpaK11BI	GGWCC	1 cut(s)	661
XapI	RAATTY	5 cut(s)	198, 755, 803, 946, 990
XmiI	GTMKAC	3 cut(s)	162, 519, 828
XmnI	GAANNNNTTC	1 cut(s)	807
XspI	CTAG	1 cut(s)	528
ZrmI	AGTACT	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.