Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008890

Physical Location & Seq

Genomic Coordinates Reverse (-)

4428959 .. 4430413

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0057500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAGAGCCATTTGAAGATGGTGTTAGTGGTTTTCTTTGTATTGGTTTTAGGGATTAGCACTAGAACAGTTGATGGTGCAGTTTCTCAAAGTACCATGAAAAAGATTGATAGGATGAATAGGAAAGGCCCGTACTTGGGTATTATAGTACCAAATTCCTTTGAGCTCACCCCTCTTCTTCAATCGGCAAGCTTTGTGACTGATCAGAAGCATCCCAGTTTGGATTTTTCAGGAAGAAGGTTTCGATTTGGTAGATTGGATAATCAAAGTGTTGTAATTGCTATGACAGGGTTGAGCATGCTTAATGCAGGTGTAACAACTCAATTATTGCTAACCCTATTCAAGGTGAAAGGGGTTGTGCACTATGGAATTGCAGGAAATGCAGATCCTCAACTCCAAATTGGAGATGTCACTATCCCTCAGTGTTGGGCTCATACAGGCCTTTGGAATTGGCAGAGGTTTGGGGATGGTCCTGATAATTTGTTATCCTTGGAGTCATTCGGAGACTACACTAGGGATGTTGGTTACATAAAATTTTCCGAATTCAACAACAAAACAGAAACTGAGAAGTCTGTTGACAATTTTCTGAACAATGCATGGTACCAACCGGAAGAGATCTTCCCAGTTTATGGCACTCCTGAAGTTCGGCAGCATGCCTTTTGGGTCCCCGTAAACAAAAAATATTTTGCACTAGCTCAACAACTACTGGATTTGAAGTTAGAGAGTTGCGTGAATACTACTTGTTTACCAAGAGCACCAATAGTGGTGAGAGTGCAAAGGGGGATCAGTGCCAATGTGTTTGTGGACAATAGTGCATATAGACAATTCTTGAACTCCAAGTTTAATGCCACTGCAATTGACATGGAAAGTGCTGCAGTAGCTCTGGTCTGTGAACAGCAAAAGACACCTTTCATTGTGATTAGGGCGCTATCAGATTTGGCCGGGGGAGGCTCCTCTGTGTCGAATGAAGCCTCTATTTTCGCATCATTGGCAGCTCAAAATGCAGTCACCGTTGTGCTCAAATTCATCTCCTTGTTGTCTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

348

Amino Acids

38.49

Weight (kDa)

8.27

Isoelectric Point (pI)

27.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNP_UDP_1	PF01048	46 - 343	9.4e-30	Phosphorylase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008890)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G113800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0096291 RchiOBHm_Chr6g0264751 RchiOBHm_Chr6g0275001
rosa_laevigata	RLG00000002574 RLG00000016632
rosa_multiflora	Rmu_co8275375.1_g000001 Rmu_co8431381.1_g000001 Rmu_sc0000692.1_g000006 Rmu_sc0005996.1_g000021
rosa_roxburghii	Rroxscaffold_3G00243270
rosa_rugosa	Rorug02G0057500
rosa_samantha	Rh2AG104300 Rh2BG106400 Rh2CG108300 Rh2DG107100 Rh7AG298500 Rh7AG298900 Rh7BG289400 Rh7BG290600 Rh7CG318400 Rh7DG300400
rosa_wichuraiana	Rw7G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	299
Acc65I	GGTACC	1 cut(s)	600
AccB1I	GGYRCC	1 cut(s)	600
AccB7I	CCANNNNNTGG	1 cut(s)	629
AclWI	GGATC	2 cut(s)	380, 791
AcoI	YGGCCR	1 cut(s)	939
AcsI	RAATTY	4 cut(s)	154, 533, 542, 1022
AcuI	CTGAAG	1 cut(s)	660
AfaI	GTAC	4 cut(s)	94, 134, 150, 602
AfiI	CCNNNNNNNGG	4 cut(s)	136, 137, 343, 629
AgsI	TTSAA	6 cut(s)	16, 182, 343, 547, 715, 832
AleI	CACNNNNGTG	1 cut(s)	1013
AluBI	AGCT	5 cut(s)	166, 192, 695, 881, 995
AluI	AGCT	5 cut(s)	166, 192, 695, 881, 995
Alw21I	GWGCWC	4 cut(s)	168, 363, 757, 1020
Alw26I	GTCTC	1 cut(s)	498
Alw44I	GTGCAC	1 cut(s)	359
AlwI	GGATC	2 cut(s)	380, 791
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	3 cut(s)	127, 439, 939
ApaLI	GTGCAC	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	649, 872, 992
ApoI	RAATTY	4 cut(s)	154, 533, 542, 1022
Asp718I	GGTACC	1 cut(s)	600
AspLEI	GCGC	1 cut(s)	928
AspS9I	GGNCC	3 cut(s)	128, 470, 664
AsuC2I	CCSGG	1 cut(s)	943
AsuHPI	GGTGA	4 cut(s)	160, 358, 778, 1000
AvaII	GGWCC	2 cut(s)	470, 664
BaeGI	GKGCMC	1 cut(s)	363
BanI	GGYRCC	1 cut(s)	600
BanII	GRGCYC	2 cut(s)	168, 433
BbsI	GAAGAC	1 cut(s)	1032
Bbv12I	GWGCWC	4 cut(s)	168, 363, 757, 1020
BbvI	GCAGC	3 cut(s)	661, 859, 1004
BccI	CCATC	3 cut(s)	13, 68, 461
BclI	TGATCA	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	943
BcoDI	GTCTC	1 cut(s)	498
BfaI	CTAG	4 cut(s)	63, 513, 692, 1045
BfmI	CTRYAG	1 cut(s)	873
BfoI	RGCGCY	1 cut(s)	929
BfuAI	ACCTGC	1 cut(s)	299
BglII	AGATCT	1 cut(s)	615
BisI	GCNGC	3 cut(s)	650, 873, 993
BlsI	GCNGC	3 cut(s)	651, 874, 994
Bme1390I	CCNGG	1 cut(s)	943
Bme18I	GGWCC	2 cut(s)	470, 664
BmgT120I	GGNCC	3 cut(s)	128, 470, 664
BmiI	GGNNCC	4 cut(s)	602, 665, 666, 952
BmrFI	CCNGG	1 cut(s)	943
BmrI	ACTGGG	2 cut(s)	210, 617
BmsI	GCATC	2 cut(s)	220, 992
BmuI	ACTGGG	2 cut(s)	210, 617
BpiI	GAAGAC	1 cut(s)	1032
BpuMI	CCSGG	1 cut(s)	943
BsaJI	CCNNGG	2 cut(s)	489, 942
BsaWI	WCCGGW	1 cut(s)	607
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 137, 343, 629
Bse1I	ACTGG	3 cut(s)	216, 623, 711
BseDI	CCNNGG	2 cut(s)	489, 942
BseGI	GGATG	4 cut(s)	120, 211, 472, 523
BseLI	CCNNNNNNNGG	4 cut(s)	136, 137, 343, 629
BseMII	CTCAG	2 cut(s)	434, 555
BseNI	ACTGG	3 cut(s)	216, 623, 711
BseRI	GAGGAG	1 cut(s)	943
BseSI	GKGCMC	1 cut(s)	363
BseXI	GCAGC	3 cut(s)	661, 859, 1004
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	129, 441, 941
BshNI	GGYRCC	1 cut(s)	600
BsiHKAI	GWGCWC	4 cut(s)	168, 363, 757, 1020
BsiSI	CCGG	2 cut(s)	608, 942
BslFI	GGGAC	1 cut(s)	650
BslI	CCNNNNNNNGG	4 cut(s)	136, 137, 343, 629
BsmAI	GTCTC	1 cut(s)	498
BsmFI	GGGAC	1 cut(s)	650
BsnI	GGCC	3 cut(s)	129, 441, 941
Bsp1286I	GDGCHC	5 cut(s)	168, 363, 433, 757, 1020
Bsp143I	GATC	4 cut(s)	202, 385, 615, 783
BspANI	GGCC	3 cut(s)	129, 441, 941
BspCNI	CTCAG	2 cut(s)	433, 556
BspLI	GGNNCC	4 cut(s)	602, 665, 666, 952
BspMAI	CTGCAG	1 cut(s)	877
BspMI	ACCTGC	1 cut(s)	299
BspPI	GGATC	2 cut(s)	380, 791
BspT107I	GGYRCC	1 cut(s)	600
BsrI	ACTGG	3 cut(s)	216, 623, 711
BssECI	CCNNGG	2 cut(s)	489, 942
BssMI	GATC	4 cut(s)	202, 385, 615, 783
BssT1I	CCWWGG	1 cut(s)	489
Bst4CI	ACNGT	2 cut(s)	70, 1012
Bst6I	CTCTTC	2 cut(s)	180, 606
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstC8I	GCNNGC	3 cut(s)	190, 299, 654
BstDEI	CTNAG	2 cut(s)	420, 564
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstF5I	GGATG	4 cut(s)	120, 211, 472, 523
BstH2I	RGCGCY	1 cut(s)	929
BstHHI	GCGC	1 cut(s)	928
BstKTI	GATC	4 cut(s)	205, 388, 618, 786
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	4 cut(s)	202, 385, 615, 783
BstMWI	GCNNNNNNNGC	4 cut(s)	380, 878, 989, 1001
BstNSI	RCATGY	2 cut(s)	301, 656
BstSCI	CCNGG	1 cut(s)	941
BstSFI	CTRYAG	1 cut(s)	873
BstSLI	GKGCMC	1 cut(s)	363
BstV1I	GCAGC	3 cut(s)	661, 859, 1004
BstV2I	GAAGAC	1 cut(s)	1032
BstX2I	RGATCY	2 cut(s)	385, 615
BstYI	RGATCY	2 cut(s)	385, 615
BsuRI	GGCC	3 cut(s)	129, 441, 941
BtsCI	GGATG	4 cut(s)	120, 211, 472, 523
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	3 cut(s)	428, 793, 849
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	3 cut(s)	190, 299, 654
CaiI	CAGNNNCTG	1 cut(s)	563
CfoI	GCGC	1 cut(s)	928
Cfr13I	GGNCC	3 cut(s)	128, 470, 664
Csp6I	GTAC	4 cut(s)	93, 133, 149, 601
CspCI	CAANNNNNGTGG	2 cut(s)	838, 873
CviAII	CATG	5 cut(s)	97, 298, 597, 653, 862
CviQI	GTAC	4 cut(s)	93, 133, 149, 601
DdeI	CTNAG	2 cut(s)	420, 564
DpnI	GATC	4 cut(s)	204, 387, 617, 785
DpnII	GATC	4 cut(s)	202, 385, 615, 783
EaeI	YGGCCR	1 cut(s)	939
Eam1104I	CTCTTC	2 cut(s)	180, 606
EarI	CTCTTC	2 cut(s)	180, 606
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	489
Eco147I	AGGCCT	1 cut(s)	441
Eco24I	GRGCYC	2 cut(s)	168, 433
Eco47I	GGWCC	2 cut(s)	470, 664
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	660
EcoICRI	GAGCTC	1 cut(s)	166
EcoNI	CCTNNNNNAGG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	664
EcoRI	GAATTC	1 cut(s)	542
EcoT14I	CCWWGG	1 cut(s)	489
EcoT22I	ATGCAT	1 cut(s)	598
EcoT38I	GRGCYC	2 cut(s)	168, 433
ErhI	CCWWGG	1 cut(s)	489
FaeI	CATG	5 cut(s)	100, 301, 600, 656, 865
FaqI	GGGAC	1 cut(s)	650
FatI	CATG	5 cut(s)	96, 297, 596, 652, 861
FbaI	TGATCA	1 cut(s)	202
Fnu4HI	GCNGC	3 cut(s)	650, 873, 993
FokI	GGATG	4 cut(s)	127, 198, 479, 530
FriOI	GRGCYC	2 cut(s)	168, 433
Fsp4HI	GCNGC	3 cut(s)	650, 873, 993
FspBI	CTAG	4 cut(s)	63, 513, 692, 1045
GlaI	GCGC	1 cut(s)	927
GluI	GCNGC	3 cut(s)	650, 873, 993
HaeII	RGCGCY	1 cut(s)	929
HaeIII	GGCC	3 cut(s)	129, 441, 941
HapII	CCGG	2 cut(s)	608, 942
HhaI	GCGC	1 cut(s)	928
Hin1II	CATG	5 cut(s)	100, 301, 600, 656, 865
Hin6I	GCGC	1 cut(s)	926
HinP1I	GCGC	1 cut(s)	926
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HindIII	AAGCTT	1 cut(s)	190
HinfI	GANTC	1 cut(s)	494
HpaII	CCGG	2 cut(s)	608, 942
HphI	GGTGA	4 cut(s)	160, 358, 778, 1000
Hpy166II	GTNNAC	6 cut(s)	361, 577, 673, 746, 805, 893
Hpy188I	TCNGA	5 cut(s)	207, 503, 541, 588, 934
Hpy188III	TCNNGA	4 cut(s)	231, 473, 638, 829
Hpy8I	GTNNAC	6 cut(s)	361, 577, 673, 746, 805, 893
HpyAV	CCTTC	1 cut(s)	231
HpyCH4III	ACNGT	2 cut(s)	70, 1012
HpyF10VI	GCNNNNNNNGC	4 cut(s)	380, 878, 989, 1001
HpyF3I	CTNAG	2 cut(s)	420, 564
Hsp92II	CATG	5 cut(s)	100, 301, 600, 656, 865
HspAI	GCGC	1 cut(s)	926
KflI	GGGWCCC	1 cut(s)	664
KpnI	GGTACC	1 cut(s)	604
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	4 cut(s)	202, 385, 615, 783
LmnI	GCTCC	1 cut(s)	956
Lsp1109I	GCAGC	3 cut(s)	661, 859, 1004
LweI	GCATC	2 cut(s)	220, 992
MaeI	CTAG	4 cut(s)	63, 513, 692, 1045
MaeIII	GTNAC	5 cut(s)	196, 313, 409, 524, 1006
MalI	GATC	4 cut(s)	204, 387, 617, 785
MboI	GATC	4 cut(s)	202, 385, 615, 783
MboII	GAAGA	7 cut(s)	28, 167, 170, 246, 610, 623, 1032
MfeI	CAATTG	1 cut(s)	855
MflI	RGATCY	2 cut(s)	385, 615
MhlI	GDGCHC	5 cut(s)	168, 363, 433, 757, 1020
MlyI	GAGTC	1 cut(s)	503
MnlI	CCTC	7 cut(s)	183, 399, 429, 450, 941, 964, 982
Mph1103I	ATGCAT	1 cut(s)	598
MseI	TTAA	2 cut(s)	303, 843
MslI	CAYNNNNRTG	1 cut(s)	1013
MspI	CCGG	2 cut(s)	608, 942
MspR9I	CCNGG	1 cut(s)	943
MunI	CAATTG	1 cut(s)	855
MwoI	GCNNNNNNNGC	4 cut(s)	380, 878, 989, 1001
NciI	CCSGG	1 cut(s)	943
NdeII	GATC	4 cut(s)	202, 385, 615, 783
NlaIII	CATG	5 cut(s)	100, 301, 600, 656, 865
NlaIV	GGNNCC	4 cut(s)	602, 665, 666, 952
NmuCI	GTSAC	3 cut(s)	196, 409, 1006
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	2 cut(s)	301, 656
OliI	CACNNNNGTG	1 cut(s)	1013
PaeI	GCATGC	2 cut(s)	301, 656
PaqCI	CACCTGC	1 cut(s)	299
PceI	AGGCCT	1 cut(s)	441
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	3 cut(s)	651, 874, 994
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
PpuMI	RGGWCCY	1 cut(s)	664
Psp124BI	GAGCTC	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	664
PspN4I	GGNNCC	4 cut(s)	602, 665, 666, 952
PspPI	GGNCC	3 cut(s)	128, 470, 664
PspPPI	RGGWCCY	1 cut(s)	664
PstI	CTGCAG	1 cut(s)	877
PstNI	CAGNNNCTG	1 cut(s)	563
PsuI	RGATCY	2 cut(s)	385, 615
RsaI	GTAC	4 cut(s)	94, 134, 150, 602
RsaNI	GTAC	4 cut(s)	93, 133, 149, 601
RseI	CAYNNNNRTG	1 cut(s)	1013
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	303, 843
SatI	GCNGC	3 cut(s)	650, 873, 993
Sau3AI	GATC	4 cut(s)	202, 385, 615, 783
Sau96I	GGNCC	3 cut(s)	128, 470, 664
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	1 cut(s)	943
SduI	GDGCHC	5 cut(s)	168, 363, 433, 757, 1020
SfaNI	GCATC	2 cut(s)	220, 992
SfcI	CTRYAG	1 cut(s)	873
SinI	GGWCC	2 cut(s)	470, 664
SmiMI	CAYNNNNRTG	1 cut(s)	1013
SphI	GCATGC	2 cut(s)	301, 656
SseBI	AGGCCT	1 cut(s)	441
SspI	AATATT	1 cut(s)	683
SspMI	CTAG	4 cut(s)	63, 513, 692, 1045
SstI	GAGCTC	1 cut(s)	168
StuI	AGGCCT	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	941
StyI	CCWWGG	1 cut(s)	489
TaaI	ACNGT	2 cut(s)	70, 1012
TaqI	TCGA	2 cut(s)	244, 962
Tru1I	TTAA	2 cut(s)	303, 843
Tru9I	TTAA	2 cut(s)	303, 843
TscAI	CASTG	3 cut(s)	428, 793, 856
TseFI	GTSAC	3 cut(s)	196, 409, 1006
TseI	GCWGC	3 cut(s)	649, 872, 992
Tsp45I	GTSAC	3 cut(s)	196, 409, 1006
TspDTI	ATGAA	5 cut(s)	113, 131, 901, 981, 1015
TspRI	CASTG	3 cut(s)	428, 793, 856
Van91I	CCANNNNNTGG	1 cut(s)	629
VneI	GTGCAC	1 cut(s)	359
VpaK11BI	GGWCC	2 cut(s)	470, 664
XagI	CCTNNNNNAGG	1 cut(s)	341
XapI	RAATTY	4 cut(s)	154, 533, 542, 1022
XceI	RCATGY	2 cut(s)	301, 656
XcmI	CCANNNNNNNNNTGG	1 cut(s)	799
XspI	CTAG	4 cut(s)	63, 513, 692, 1045
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.