Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008890

Physical Location & Seq

Genomic Coordinates Forward (+)

36624338 .. 36625522

Gene Structure 1185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24671

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCTTGGAACTATGGCAACTGCATCATCCCACATTACGCAAAAGTTTGAAGAGTGGATGGCAAAGCATAACCGCGTCTACTCCAATAATTTAGAAAAGGAGAGGCGTTACAAAATTTTCAAGGAAAACTTTAAGCAAAGGCGAGCCAGGTATAACACTGAACCTAAGCTGAATATATTTGGTGATCAAACCGATGATGAACTCCCCAAAGGCTGCGTGAGACTACCCTTAGAACCACTGGAGATTTCCTACAATCCTATTTTCTATGATGAATTTGCTCCTGACAACAAAAATTGGGCATATGAAGGAGTTGTCACTGAAGTTAGACGCCAGCAGGGCGATACTTGTTGGGCTTTTACAGCAGCAGCTGCAATCGAAGGAATTGTAAAAATTAAAAAAGGCGAATTAGTTACATTGTCTCCTCAACAAATTGTAGACTGTACTCTGGCCCGAGAAAAGTATAGAGAGCACTACGGACTCAAGGGCACAATTGGCGGTGGTCACCCAGAAGCGGGGTTTGAATATGCAGCGGACTATGGAATCAACCGAGAGATCACTTATCCATTCATCGGGCGGGACCAACCATGCAACGCCAAATTGGAAAGATATCCTTATACAAAGATAAGTGGTTACTTAGGCATACCTCCAAATGTTGAAAATCTTATGAAGAAATATGTGGCTAGCCAACCGATTGCAGCCGTAATGGAAATCACTAGGACATTCCATCGTTACATAGATGGTGTATACCAAGATGAATTTGGGGAATGTGGAAGGTTACCAATGAGAAACCGTAGCTATCACGCTGTTACAGTTGTTGGGTACGGGACAGATGAAGATGACATGGACTACTGGTTAGTGAAGAATTCTTGGGGCCCGGATTGGGGTGAAGAAGATGGATATTTTCGAATTCAAAGAAATGTGTATCGGCGATTTATAATGTGGTCTTACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04210 ko04612 ko04621 ko04924 map04140 map04142 map04210 map04612 map04621 map04924

Pfam Domains

Protein Families

Granulin Inhibitor_I29 Peptidase_C1

Protein Analysis

317

Amino Acids

36.93

Weight (kDa)

6.35

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	16 - 68	1.4e-07	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	94 - 308	8.5e-49	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008890)

Species	Orthologous Gene IDs
prunus_persica	Prupe.5G113800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0096291 RchiOBHm_Chr6g0264751 RchiOBHm_Chr6g0275001
rosa_laevigata	RLG00000002574 RLG00000016632
rosa_multiflora	Rmu_co8275375.1_g000001 Rmu_co8431381.1_g000001 Rmu_sc0000692.1_g000006 Rmu_sc0005996.1_g000021
rosa_roxburghii	Rroxscaffold_3G00243270
rosa_rugosa	Rorug02G0057500
rosa_samantha	Rh2AG104300 Rh2BG106400 Rh2CG108300 Rh2DG107100 Rh7AG298500 Rh7AG298900 Rh7BG289400 Rh7BG290600 Rh7CG318400 Rh7DG300400
rosa_wichuraiana	Rw7G025390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	935
AccI	GTMKAC	3 cut(s)	78, 435, 744
AccII	CGCG	1 cut(s)	75
AciI	CCGC	5 cut(s)	73, 495, 512, 530, 574
AcsI	RAATTY	5 cut(s)	114, 272, 755, 862, 906
AcuI	CTGAAG	1 cut(s)	339
AcyI	GRCGYC	1 cut(s)	328
AfaI	GTAC	2 cut(s)	442, 821
AfiI	CCNNNNNNNGG	5 cut(s)	511, 512, 569, 880, 881
AgsI	TTSAA	5 cut(s)	50, 121, 521, 656, 911
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	3 cut(s)	169, 368, 795
AluI	AGCT	3 cut(s)	169, 368, 795
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	2 cut(s)	214, 423
AlwNI	CAGNNNCTG	1 cut(s)	368
Ama87I	CYCGRG	1 cut(s)	450
AoxI	GGCC	2 cut(s)	447, 871
ApaI	GGGCCC	1 cut(s)	875
ApeKI	GCWGC	6 cut(s)	213, 362, 365, 368, 527, 695
ApoI	RAATTY	5 cut(s)	114, 272, 755, 862, 906
AspS9I	GGNCC	4 cut(s)	448, 577, 871, 872
AsuC2I	CCSGG	1 cut(s)	875
AsuHPI	GGTGA	3 cut(s)	194, 494, 896
AsuII	TTCGAA	1 cut(s)	904
AsuNHI	GCTAGC	1 cut(s)	680
AvaI	CYCGRG	1 cut(s)	450
AvaII	GGWCC	1 cut(s)	577
BaeGI	GKGCMC	2 cut(s)	488, 875
BanII	GRGCYC	1 cut(s)	875
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	6 cut(s)	200, 355, 374, 377, 539, 707
BccI	CCATC	4 cut(s)	52, 731, 732, 887
BceAI	ACGGC	1 cut(s)	683
BciT130I	CCWGG	1 cut(s)	148
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	875
BcoDI	GTCTC	2 cut(s)	214, 423
BfaI	CTAG	2 cut(s)	681, 714
BglI	GCCNNNNNGGC	1 cut(s)	336
BisI	GCNGC	6 cut(s)	214, 363, 366, 369, 528, 696
BlsI	GCNGC	6 cut(s)	215, 364, 367, 370, 529, 697
Bme1390I	CCNGG	2 cut(s)	148, 875
Bme18I	GGWCC	1 cut(s)	577
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	4 cut(s)	448, 577, 871, 872
BmiI	GGNNCC	3 cut(s)	578, 872, 873
BmrFI	CCNGG	2 cut(s)	148, 875
BmsI	GCATC	1 cut(s)	32
BmtI	GCTAGC	1 cut(s)	684
BpmI	CTGGAG	1 cut(s)	260
Bpu10I	CCTNAGC	1 cut(s)	165
Bpu14I	TTCGAA	1 cut(s)	904
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	1 cut(s)	875
BsaHI	GRCGYC	1 cut(s)	328
BsaXI	ACNNNNNCTCC	2 cut(s)	403, 433
Bsc4I	CCNNNNNNNGG	5 cut(s)	511, 512, 569, 880, 881
Bse1I	ACTGG	2 cut(s)	243, 854
BseBI	CCWGG	1 cut(s)	148
BseGI	GGATG	2 cut(s)	26, 63
BseLI	CCNNNNNNNGG	5 cut(s)	511, 512, 569, 880, 881
BseNI	ACTGG	2 cut(s)	243, 854
BseRI	GAGGAG	1 cut(s)	411
BseSI	GKGCMC	2 cut(s)	488, 875
BseXI	GCAGC	6 cut(s)	200, 355, 374, 377, 539, 707
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	449, 873
BsiHKAI	GWGCWC	1 cut(s)	471
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	1 cut(s)	875
BslFI	GGGAC	2 cut(s)	590, 838
BslI	CCNNNNNNNGG	5 cut(s)	511, 512, 569, 880, 881
BsmAI	GTCTC	2 cut(s)	214, 423
BsmFI	GGGAC	2 cut(s)	590, 838
BsnI	GGCC	2 cut(s)	449, 873
BsoBI	CYCGRG	1 cut(s)	450
Bsp119I	TTCGAA	1 cut(s)	904
Bsp120I	GGGCCC	1 cut(s)	871
Bsp1286I	GDGCHC	3 cut(s)	471, 488, 875
Bsp143I	GATC	2 cut(s)	184, 552
BspACI	CCGC	5 cut(s)	73, 495, 512, 530, 574
BspANI	GGCC	2 cut(s)	449, 873
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	3 cut(s)	578, 872, 873
BspOI	GCTAGC	1 cut(s)	684
BspT104I	TTCGAA	1 cut(s)	904
BsrI	ACTGG	2 cut(s)	243, 854
BssMI	GATC	2 cut(s)	184, 552
BssNAI	GTATAC	1 cut(s)	745
BssNI	GRCGYC	1 cut(s)	328
Bst1107I	GTATAC	1 cut(s)	745
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	3 cut(s)	440, 791, 811
Bst6I	CTCTTC	1 cut(s)	45
BstACI	GRCGYC	1 cut(s)	328
BstAPI	GCANNNNNTGC	1 cut(s)	368
BstBI	TTCGAA	1 cut(s)	904
BstC8I	GCNNGC	3 cut(s)	144, 332, 682
BstDEI	CTNAG	3 cut(s)	165, 229, 634
BstEII	GGTNACC	2 cut(s)	500, 774
BstF5I	GGATG	2 cut(s)	26, 63
BstFNI	CGCG	1 cut(s)	75
BstKTI	GATC	2 cut(s)	187, 555
BstMAI	GTCTC	2 cut(s)	214, 423
BstMBI	GATC	2 cut(s)	184, 552
BstMWI	GCNNNNNNNGC	4 cut(s)	336, 359, 368, 492
BstNI	CCWGG	1 cut(s)	148
BstPI	GGTNACC	2 cut(s)	500, 774
BstSCI	CCNGG	2 cut(s)	146, 873
BstSLI	GKGCMC	2 cut(s)	488, 875
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	6 cut(s)	200, 355, 374, 377, 539, 707
BstZ17I	GTATAC	1 cut(s)	745
BsuRI	GGCC	2 cut(s)	449, 873
BtsCI	GGATG	2 cut(s)	26, 63
BtsIMutI	CAGTG	3 cut(s)	156, 236, 315
Cac8I	GCNNGC	3 cut(s)	144, 332, 682
CaiI	CAGNNNCTG	1 cut(s)	368
Cfr13I	GGNCC	4 cut(s)	448, 577, 871, 872
CseI	GACGC	2 cut(s)	64, 336
Csp6I	GTAC	2 cut(s)	441, 820
CviAII	CATG	2 cut(s)	585, 841
CviQI	GTAC	2 cut(s)	441, 820
DdeI	CTNAG	3 cut(s)	165, 229, 634
DpnI	GATC	2 cut(s)	186, 554
DpnII	GATC	2 cut(s)	184, 552
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	875
Eco32I	GATATC	1 cut(s)	608
Eco47I	GGWCC	1 cut(s)	577
Eco57I	CTGAAG	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	450
Eco91I	GGTNACC	2 cut(s)	500, 774
EcoO109I	RGGNCCY	1 cut(s)	871
EcoO65I	GGTNACC	2 cut(s)	500, 774
EcoRI	GAATTC	2 cut(s)	862, 906
EcoRII	CCWGG	1 cut(s)	146
EcoRV	GATATC	1 cut(s)	608
EcoT38I	GRGCYC	1 cut(s)	875
FaeI	CATG	2 cut(s)	588, 844
FalI	AAGNNNNNCTT	4 cut(s)	113, 145, 595, 627
FaqI	GGGAC	2 cut(s)	590, 838
FatI	CATG	2 cut(s)	584, 840
FauI	CCCGC	2 cut(s)	505, 567
FauNDI	CATATG	1 cut(s)	301
FbaI	TGATCA	1 cut(s)	184
FblI	GTMKAC	3 cut(s)	78, 435, 744
Fnu4HI	GCNGC	6 cut(s)	214, 363, 366, 369, 528, 696
FokI	GGATG	2 cut(s)	13, 70
FriOI	GRGCYC	1 cut(s)	875
Fsp4HI	GCNGC	6 cut(s)	214, 363, 366, 369, 528, 696
FspBI	CTAG	2 cut(s)	681, 714
GluI	GCNGC	6 cut(s)	214, 363, 366, 369, 528, 696
GsuI	CTGGAG	1 cut(s)	260
HaeIII	GGCC	2 cut(s)	449, 873
HapII	CCGG	1 cut(s)	875
HgaI	GACGC	2 cut(s)	64, 336
Hin1I	GRCGYC	1 cut(s)	328
Hin1II	CATG	2 cut(s)	588, 844
HinfI	GANTC	2 cut(s)	477, 540
HpaII	CCGG	1 cut(s)	875
HphI	GGTGA	3 cut(s)	194, 494, 896
Hpy166II	GTNNAC	3 cut(s)	79, 436, 745
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	3 cut(s)	79, 436, 745
HpyAV	CCTTC	3 cut(s)	299, 371, 765
HpyCH4III	ACNGT	3 cut(s)	440, 791, 811
HpyCH4V	TGCA	5 cut(s)	23, 371, 527, 588, 695
HpyF10VI	GCNNNNNNNGC	4 cut(s)	336, 359, 368, 492
HpyF3I	CTNAG	3 cut(s)	165, 229, 634
Hsp92I	GRCGYC	1 cut(s)	328
Hsp92II	CATG	2 cut(s)	588, 844
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	184, 552
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	6 cut(s)	200, 355, 374, 377, 539, 707
LweI	GCATC	1 cut(s)	32
MaeI	CTAG	2 cut(s)	681, 714
MaeIII	GTNAC	8 cut(s)	107, 313, 409, 500, 629, 728, 774, 805
MalI	GATC	2 cut(s)	186, 554
MboI	GATC	2 cut(s)	184, 552
MboII	GAAGA	6 cut(s)	62, 679, 845, 871, 899, 902
MfeI	CAATTG	1 cut(s)	489
MhlI	GDGCHC	3 cut(s)	471, 488, 875
MlyI	GAGTC	1 cut(s)	471
MnlI	CCTC	3 cut(s)	96, 432, 654
MseI	TTAA	2 cut(s)	132, 393
MspA1I	CMGCKG	2 cut(s)	368, 530
MspI	CCGG	1 cut(s)	875
MspR9I	CCNGG	2 cut(s)	148, 875
MunI	CAATTG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	4 cut(s)	336, 359, 368, 492
NciI	CCSGG	1 cut(s)	875
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	2 cut(s)	184, 552
NheI	GCTAGC	1 cut(s)	680
NlaIII	CATG	2 cut(s)	588, 844
NlaIV	GGNNCC	3 cut(s)	578, 872, 873
NmuCI	GTSAC	2 cut(s)	313, 500
NspV	TTCGAA	1 cut(s)	904
PfeI	GAWTC	1 cut(s)	540
PkrI	GCNGC	6 cut(s)	215, 364, 367, 370, 529, 697
PleI	GAGTC	1 cut(s)	471
PpsI	GAGTC	1 cut(s)	471
PsiI	TTATAA	1 cut(s)	935
Psp6I	CCWGG	1 cut(s)	146
PspEI	GGTNACC	2 cut(s)	500, 774
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	3 cut(s)	578, 872, 873
PspOMI	GGGCCC	1 cut(s)	871
PspPI	GGNCC	4 cut(s)	448, 577, 871, 872
PstNI	CAGNNNCTG	1 cut(s)	368
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	2 cut(s)	442, 821
RsaNI	GTAC	2 cut(s)	441, 820
SaqAI	TTAA	2 cut(s)	132, 393
SatI	GCNGC	6 cut(s)	214, 363, 366, 369, 528, 696
Sau3AI	GATC	2 cut(s)	184, 552
Sau96I	GGNCC	4 cut(s)	448, 577, 871, 872
SchI	GAGTC	1 cut(s)	471
ScrFI	CCNGG	2 cut(s)	148, 875
SduI	GDGCHC	3 cut(s)	471, 488, 875
SetI	ASST	7 cut(s)	152, 166, 171, 370, 646, 776, 797
SfaNI	GCATC	1 cut(s)	32
SfuI	TTCGAA	1 cut(s)	904
SinI	GGWCC	1 cut(s)	577
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
SsiI	CCGC	5 cut(s)	73, 495, 512, 530, 574
SspMI	CTAG	2 cut(s)	681, 714
StyD4I	CCNGG	2 cut(s)	146, 873
TaaI	ACNGT	3 cut(s)	440, 791, 811
TaqI	TCGA	2 cut(s)	375, 904
TatI	WGTACW	1 cut(s)	440
TfiI	GAWTC	1 cut(s)	540
Tru1I	TTAA	2 cut(s)	132, 393
Tru9I	TTAA	2 cut(s)	132, 393
TscAI	CASTG	3 cut(s)	163, 243, 322
TseFI	GTSAC	2 cut(s)	313, 500
TseI	GCWGC	6 cut(s)	213, 362, 365, 368, 527, 695
Tsp45I	GTSAC	2 cut(s)	313, 500
TspDTI	ATGAA	7 cut(s)	213, 285, 318, 556, 680, 768, 846
TspGWI	ACGGA	1 cut(s)	489
TspRI	CASTG	3 cut(s)	163, 243, 322
VpaK11BI	GGWCC	1 cut(s)	577
XapI	RAATTY	5 cut(s)	114, 272, 755, 862, 906
XcmI	CCANNNNNNNNNTGG	1 cut(s)	755
XmiI	GTMKAC	3 cut(s)	78, 435, 744
XspI	CTAG	2 cut(s)	681, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.