RchiOBHm_Chr2g0107421

Acyl CoA binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003519
Physical Location & Seq
Reverse (-)
18716916 .. 18720383
3468 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1527 bp
ATGGACTTTATTTCAGATTTTGTATTGACGATTGCTCTGTGTTTCCTGGTACCTTTCTTGCTTTGCTTCCTTTTGCCTGTGATTGTTGCTGTGTGTCCGAGCAGGGATGACCATGTGGGAAAAAGACGGGTTCTTTATGAGTGCAAGCCCAAAACTCATGAGTGGGAGAGTGAGGTAGGTAGTGGGTTTGTTGAGAAAGCTGTGGAAGGTGATGAGTTTTTGGGTGAGCCCAAGAAGGAAAGTTTGGTTCTTGAGGAGTTTGTGGATGAGGGTTTGGATGAAAATGAAGTTTTGAGAGGTGATGGAGTTGGTTGTTGGAAGGAGAAGAGTGTTGAGGAAGAAAGGTTTGATGGTTTGTGTGAGTGTGAATGTGTAGAGAACGTTTTTGATGAAAGTTCAGAGAGGTGTGAATTTGGGGGAGTTGAGTTTGATTTGGGGAAAAATGAAGTGGGGGTCGTTTTGGGGGTTGTTTGTTTGCCGGAGAAGAATGTTGAAGAAGAACACTTTGATGGGCGTGTTGGGGTATGTGGGTATGTAGATTACTTGGTTGATGAAAGTTCTGAGAGGCATGAAAATGAAAATGGCGGGCTTGAGTTTGATTTGGACCAAGCAGGAGTTGTTACTTTGCCTGAGAAGAATGTTGAACAAGAAAGCTGTGATGGGGATGGTGGTGTGTGTCGGTGTGGAGAGAACTTGGTTGATGAAAGTTCCGAGAGGCATGAATTTGGAGAAATTGAGTCTGATTTGGCAAGAAATGAAGTGCGGGTTGTTTGTTTGCTGGAGAAGTATGTTGAGGAAGAATGCTCTGCTGGGGATGTTGGTATATGTGGCTGCGTGGAGAACTCGGTTGGTGCAAGTTCCGAGAAGCATGGATTTGGCGAAATTGAGTTTGGTTTGGCAAGAATCCAAGTGGGACTTCCGGAAAGTGAAGAGATCAACGTGTCAAAGTGTGATGGAAATGATGGAACTGATGAAGCCAAGAACAATGTAGTTGATGGTGAAGTTAATGAGGGGTTCTTCAGTGAGGATAATGATTGGGAGGCTATAGAAAGAACTGAATTGGAGAGGCTCTTTGGTGCTGCAGTGGTGTTTGTCGGGTCTAAGAGTAATGCTGATAGAGTTTCAAGTCTTGGGAGTGATGTGAAGATGAGGTTGGATGGGCTTCACAAGATTGCTACTCGAGGACCTTGCTTGGAACGCCAGCCTATGGCATTCAAGGTCTCGGCAAGAGCAAAATGGAATGCTTGGCAGCAGCTTGGCAACATGAGTGCAGAGGTAGCAATGGAGCAGTACATCACCCTTCTTTCAGAAAGTGTTCCTGGGTGGATGCAAGATGTCCATGGTGACTTTGCAAATCCCCAAGTATATGAGACGGTAACTGCTGATCTGAACATGTTGATTCAAAACCAATCAGAAGCTGCAGGTGTAAGAGAAGAAGAAGAACTAAAGCCTGATGCTAAAGGTTTAGATGAGATTGGGGTGGGGGGTCGTAACTTGTTGAGCAAGGTTTTTGCCAATTGTTCATAA

Protein Analysis

508

Amino Acids

55.95

Weight (kDa)

4.29

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ACBP PF00887 356 - 435 1.7e-20 Acyl CoA binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1412
Acc36I ACCTGC 1 cut(s) 1412
Acc65I GGTACC 1 cut(s) 49
AccB1I GGYRCC 1 cut(s) 49
AccB7I CCANNNNNTGG 1 cut(s) 1207
AccIII TCCGGA 1 cut(s) 919
AciI CCGC 2 cut(s) 585, 763
AclI AACGTT 1 cut(s) 381
AcsI RAATTY 2 cut(s) 410, 722
AcuI CTGAAG 1 cut(s) 1003
AfaI GTAC 2 cut(s) 51, 1292
AfiI CCNNNNNNNGG 1 cut(s) 1207
AflIII ACRYGT 2 cut(s) 939, 1392
AgsI TTSAA 5 cut(s) 494, 644, 1125, 1216, 1403
AjnI CCWGG 2 cut(s) 45, 1318
AjuI GAANNNNNNNTTGG 8 cut(s) 227, 259, 873, 900, 905, 932, 1136, 1168
AluBI AGCT 4 cut(s) 200, 654, 1255, 1418
AluI AGCT 4 cut(s) 200, 654, 1255, 1418
Alw26I GTCTC 2 cut(s) 1225, 1364
AlwNI CAGNNNCTG 1 cut(s) 1418
Ama87I CYCGRG 1 cut(s) 1179
Aor13HI TCCGGA 1 cut(s) 919
ApeKI GCWGC 5 cut(s) 831, 1079, 1249, 1252, 1418
ApoI RAATTY 2 cut(s) 410, 722
Asp700I GAANNNNTTC 1 cut(s) 1314
Asp718I GGTACC 1 cut(s) 49
AspS9I GGNCC 2 cut(s) 604, 1184
AsuHPI GGTGA 6 cut(s) 221, 236, 311, 1010, 1288, 1355
AvaI CYCGRG 1 cut(s) 1179
AvaII GGWCC 2 cut(s) 604, 1184
BanI GGYRCC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 231
BbvI GCAGC 5 cut(s) 818, 1066, 1261, 1264, 1405
BccI CCATC 9 cut(s) 296, 344, 503, 653, 659, 947, 956, 989, 1151
BcgI CGANNNNNNTGC 2 cut(s) 1170, 1204
BciT130I CCWGG 2 cut(s) 47, 1320
BcoDI GTCTC 2 cut(s) 1225, 1364
BfmI CTRYAG 3 cut(s) 1044, 1080, 1419
BfuAI ACCTGC 1 cut(s) 1412
BisI GCNGC 5 cut(s) 832, 1080, 1250, 1253, 1419
BlsI GCNGC 5 cut(s) 833, 1081, 1251, 1254, 1420
Bme1390I CCNGG 2 cut(s) 47, 1320
Bme18I GGWCC 2 cut(s) 604, 1184
BmeT110I CYCGRG 1 cut(s) 1179
BmgT120I GGNCC 2 cut(s) 604, 1184
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 2 cut(s) 47, 1320
BmsI GCATC 2 cut(s) 1317, 1444
BpmI CTGGAG 1 cut(s) 800
BpuEI CTTGAG 2 cut(s) 272, 611
BsaI GGTCTC 1 cut(s) 1225
BsaJI CCNNGG 2 cut(s) 1319, 1339
BsaWI WCCGGW 1 cut(s) 919
Bsc4I CCNNNNNNNGG 1 cut(s) 1207
Bse3DI GCAATG 1 cut(s) 1287
BseAI TCCGGA 1 cut(s) 919
BseBI CCWGG 2 cut(s) 47, 1320
BseDI CCNNGG 2 cut(s) 1319, 1339
BseGI GGATG 7 cut(s) 112, 271, 283, 670, 820, 1162, 1332
BseLI CCNNNNNNNGG 1 cut(s) 1207
BseMI GCAATG 1 cut(s) 1287
BseMII CTCAG 2 cut(s) 552, 621
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 5 cut(s) 818, 1066, 1261, 1264, 1405
BseYI CCCAGC 1 cut(s) 809
BsgI GTGCAG 1 cut(s) 1290
BshNI GGYRCC 1 cut(s) 49
BsiHKCI CYCGRG 1 cut(s) 1179
BsiSI CCGG 2 cut(s) 479, 920
BslFI GGGAC 1 cut(s) 927
BslI CCNNNNNNNGG 1 cut(s) 1207
BsmAI GTCTC 2 cut(s) 1225, 1364
BsmBI CGTCTC 1 cut(s) 1364
BsmFI GGGAC 1 cut(s) 927
BsmI GAATGC 3 cut(s) 806, 1211, 1246
Bso31I GGTCTC 1 cut(s) 1225
BsoBI CYCGRG 1 cut(s) 1179
Bsp1286I GDGCHC 1 cut(s) 231
Bsp13I TCCGGA 1 cut(s) 919
Bsp143I GATC 2 cut(s) 933, 1384
Bsp19I CCATGG 1 cut(s) 1339
BspACI CCGC 2 cut(s) 585, 763
BspCNI CTCAG 2 cut(s) 553, 622
BspEI TCCGGA 1 cut(s) 919
BspHI TCATGA 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 51
BspMAI CTGCAG 2 cut(s) 1084, 1423
BspMI ACCTGC 1 cut(s) 1412
BspT107I GGYRCC 1 cut(s) 49
BspTNI GGTCTC 1 cut(s) 1225
BsrDI GCAATG 1 cut(s) 1287
BssECI CCNNGG 2 cut(s) 1319, 1339
BssMI GATC 2 cut(s) 933, 1384
BssT1I CCWWGG 1 cut(s) 1339
Bst2UI CCWGG 2 cut(s) 47, 1320
Bst4CI ACNGT 1 cut(s) 1375
Bst6I CTCTTC 2 cut(s) 320, 924
BstC8I GCNNGC 3 cut(s) 146, 587, 1202
BstDEI CTNAG 3 cut(s) 561, 630, 1101
BstDSI CCRYGG 1 cut(s) 1339
BstF5I GGATG 7 cut(s) 112, 271, 283, 670, 820, 1162, 1332
BstKTI GATC 2 cut(s) 936, 1387
BstMAI GTCTC 2 cut(s) 1225, 1364
BstMBI GATC 2 cut(s) 933, 1384
BstMWI GCNNNNNNNGC 2 cut(s) 1197, 1277
BstNI CCWGG 2 cut(s) 47, 1320
BstNSI RCATGY 1 cut(s) 1396
BstSCI CCNGG 2 cut(s) 45, 1318
BstSFI CTRYAG 3 cut(s) 1044, 1080, 1419
BstV1I GCAGC 5 cut(s) 818, 1066, 1261, 1264, 1405
BtgI CCRYGG 1 cut(s) 1339
BtsCI GGATG 7 cut(s) 112, 271, 283, 670, 820, 1162, 1332
BtsI GCAGTG 1 cut(s) 1089
BtsIMutI CAGTG 2 cut(s) 1027, 1089
BveI ACCTGC 1 cut(s) 1412
Cac8I GCNNGC 3 cut(s) 146, 587, 1202
CaiI CAGNNNCTG 1 cut(s) 1418
CciI TCATGA 1 cut(s) 157
Cfr13I GGNCC 2 cut(s) 604, 1184
Csp6I GTAC 2 cut(s) 50, 1291
CviAII CATG 8 cut(s) 113, 158, 569, 719, 869, 1264, 1340, 1393
CviQI GTAC 2 cut(s) 50, 1291
DdeI CTNAG 3 cut(s) 561, 630, 1101
DpnI GATC 2 cut(s) 935, 1386
DpnII GATC 2 cut(s) 933, 1384
Eam1104I CTCTTC 2 cut(s) 320, 924
EarI CTCTTC 2 cut(s) 320, 924
Eco130I CCWWGG 1 cut(s) 1339
Eco24I GRGCYC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 1225
Eco47I GGWCC 2 cut(s) 604, 1184
Eco57I CTGAAG 1 cut(s) 1003
Eco88I CYCGRG 1 cut(s) 1179
EcoO109I RGGNCCY 1 cut(s) 1184
EcoRII CCWGG 2 cut(s) 45, 1318
EcoT14I CCWWGG 1 cut(s) 1339
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 1339
Esp3I CGTCTC 1 cut(s) 1364
FaeI CATG 8 cut(s) 116, 161, 572, 722, 872, 1267, 1343, 1396
FalI AAGNNNNNCTT 2 cut(s) 900, 932
FaqI GGGAC 1 cut(s) 927
FatI CATG 8 cut(s) 112, 157, 568, 718, 868, 1263, 1339, 1392
FauI CCCGC 2 cut(s) 578, 756
Fnu4HI GCNGC 5 cut(s) 832, 1080, 1250, 1253, 1419
FokI GGATG 7 cut(s) 119, 278, 290, 677, 827, 1169, 1339
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 5 cut(s) 832, 1080, 1250, 1253, 1419
GluI GCNGC 5 cut(s) 832, 1080, 1250, 1253, 1419
GsaI CCCAGC 1 cut(s) 813
GsuI CTGGAG 1 cut(s) 800
HapII CCGG 2 cut(s) 479, 920
Hin1II CATG 8 cut(s) 116, 161, 572, 722, 872, 1267, 1343, 1396
HinfI GANTC 3 cut(s) 737, 903, 1399
HpaII CCGG 2 cut(s) 479, 920
HphI GGTGA 6 cut(s) 221, 236, 311, 1010, 1288, 1355
Hpy188III TCNNGA 3 cut(s) 158, 251, 920
HpyAV CCTTC 4 cut(s) 200, 229, 313, 1310
HpyCH4III ACNGT 1 cut(s) 1375
HpyCH4IV ACGT 2 cut(s) 381, 939
HpyCH4V TGCA 7 cut(s) 144, 854, 1082, 1271, 1330, 1352, 1421
HpyF10VI GCNNNNNNNGC 2 cut(s) 1197, 1277
HpyF3I CTNAG 3 cut(s) 561, 630, 1101
HpySE526I ACGT 2 cut(s) 381, 939
Hsp92II CATG 8 cut(s) 116, 161, 572, 722, 872, 1267, 1343, 1396
Kpn2I TCCGGA 1 cut(s) 919
KpnI GGTACC 1 cut(s) 53
Kzo9I GATC 2 cut(s) 933, 1384
LmnI GCTCC 1 cut(s) 1285
Lsp1109I GCAGC 5 cut(s) 818, 1066, 1261, 1264, 1405
LweI GCATC 2 cut(s) 1317, 1444
MaeII ACGT 2 cut(s) 381, 939
MaeIII GTNAC 4 cut(s) 619, 1343, 1375, 1490
MalI GATC 2 cut(s) 935, 1386
MboI GATC 2 cut(s) 933, 1384
MfeI CAATTG 1 cut(s) 1516
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 6 cut(s) 410, 722, 732, 882, 1058, 1516
MlyI GAGTC 1 cut(s) 746
MmeI TCCRAC 2 cut(s) 296, 1134
MroI TCCGGA 1 cut(s) 919
MroXI GAANNNNTTC 1 cut(s) 1314
MseI TTAA 1 cut(s) 1005
MslI CAYNNNNRTG 2 cut(s) 507, 573
MspI CCGG 2 cut(s) 479, 920
MspR9I CCNGG 2 cut(s) 47, 1320
MunI CAATTG 1 cut(s) 1516
Mva1269I GAATGC 3 cut(s) 806, 1211, 1246
MvaI CCWGG 2 cut(s) 47, 1320
MwoI GCNNNNNNNGC 2 cut(s) 1197, 1277
NcoI CCATGG 1 cut(s) 1339
NdeII GATC 2 cut(s) 933, 1384
NlaIII CATG 8 cut(s) 116, 161, 572, 722, 872, 1267, 1343, 1396
NlaIV GGNNCC 1 cut(s) 51
NmeAIII GCCGAG 1 cut(s) 1202
NmuCI GTSAC 1 cut(s) 1343
NspI RCATGY 1 cut(s) 1396
PaeR7I CTCGAG 1 cut(s) 1179
PagI TCATGA 1 cut(s) 157
PaqCI CACCTGC 1 cut(s) 1412
PciI ACATGT 1 cut(s) 1392
PctI GAATGC 3 cut(s) 806, 1211, 1246
PdmI GAANNNNTTC 1 cut(s) 1314
PfeI GAWTC 2 cut(s) 903, 1399
PflMI CCANNNNNTGG 1 cut(s) 1207
PkrI GCNGC 5 cut(s) 833, 1081, 1251, 1254, 1420
PleI GAGTC 1 cut(s) 745
PpsI GAGTC 1 cut(s) 745
PpuMI RGGWCCY 1 cut(s) 1184
PscI ACATGT 1 cut(s) 1392
Psp1406I AACGTT 1 cut(s) 381
Psp5II RGGWCCY 1 cut(s) 1184
Psp6I CCWGG 2 cut(s) 45, 1318
PspFI CCCAGC 1 cut(s) 809
PspGI CCWGG 2 cut(s) 45, 1318
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 2 cut(s) 604, 1184
PspPPI RGGWCCY 1 cut(s) 1184
PspXI VCTCGAGB 1 cut(s) 1179
PstI CTGCAG 2 cut(s) 1084, 1423
PstNI CAGNNNCTG 1 cut(s) 1418
RsaI GTAC 2 cut(s) 51, 1292
RsaNI GTAC 2 cut(s) 50, 1291
RseI CAYNNNNRTG 2 cut(s) 507, 573
SaqAI TTAA 1 cut(s) 1005
SatI GCNGC 5 cut(s) 832, 1080, 1250, 1253, 1419
Sau3AI GATC 2 cut(s) 933, 1384
Sau96I GGNCC 2 cut(s) 604, 1184
SchI GAGTC 1 cut(s) 746
ScrFI CCNGG 2 cut(s) 47, 1320
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 2 cut(s) 1317, 1444
SfcI CTRYAG 3 cut(s) 1044, 1080, 1419
Sfr274I CTCGAG 1 cut(s) 1179
SinI GGWCC 2 cut(s) 604, 1184
SlaI CTCGAG 1 cut(s) 1179
SmiMI CAYNNNNRTG 2 cut(s) 507, 573
SmlI CTYRAG 3 cut(s) 251, 590, 1179
SmoI CTYRAG 3 cut(s) 251, 590, 1179
Sse9I AATT 6 cut(s) 410, 722, 732, 882, 1058, 1516
SsiI CCGC 2 cut(s) 585, 763
StyD4I CCNGG 2 cut(s) 45, 1318
StyI CCWWGG 1 cut(s) 1339
TaaI ACNGT 1 cut(s) 1375
TaiI ACGT 2 cut(s) 384, 942
TaqI TCGA 1 cut(s) 1180
TasI AATT 6 cut(s) 410, 722, 732, 882, 1058, 1516
TatI WGTACW 1 cut(s) 1290
TfiI GAWTC 2 cut(s) 903, 1399
Tru1I TTAA 1 cut(s) 1005
Tru9I TTAA 1 cut(s) 1005
TscAI CASTG 2 cut(s) 1027, 1089
TseFI GTSAC 1 cut(s) 1343
TseI GCWGC 5 cut(s) 831, 1079, 1249, 1252, 1418
Tsp45I GTSAC 1 cut(s) 1343
TspRI CASTG 2 cut(s) 1027, 1089
Van91I CCANNNNNTGG 1 cut(s) 1207
VpaK11BI GGWCC 2 cut(s) 604, 1184
XapI RAATTY 2 cut(s) 410, 722
XceI RCATGY 1 cut(s) 1396
XhoI CTCGAG 1 cut(s) 1179
XmnI GAANNNNTTC 1 cut(s) 1314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.