Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005077

Physical Location & Seq

Genomic Coordinates Reverse (-)

55919690 .. 55923951

Gene Structure 4262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCGTTGCGGAGCCTGACGGTGCCTCTGCCCGCCGTAATTCCACCAACCTCCTCTTCTTCTTCTTCTTCTCCTCGCCGGTATAGTCTTACACAAAACAACCAGTACAATTCCCCTTGCTATGTAACTCTCCGCCGCACCCCTACCTTCGTCGTTCACAGCCTTCGGATGCGACGGCATGTCGTTCGGATGGCTCCCGAGGAGGAAAGGTTGACCCGTCGCTCCCCTCTCGATTTCCCCATCGAATGGGAAAGACCAAAACCTGGGAGGAGACCAGATATATTTCCCCAGTTTAGCCCTATGAAAACACCTTTACCAACTCCAATGCCAGCAGATCCTCCCGAAGAAGATGAAGAAGAGGAAGAAAAGAAAGAGGATGACGAAGAAGGAGAAGACAATCCTGACAAGGAGAACCCAGGAATCCCAGAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.62

Weight (kDa)

5.01

Isoelectric Point (pI)

103.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17240 AT3G24506
fragaria_vesca	FvH4_6g31380
malus_domestica	MD02G1047200.v1.1 MD09G1211800.v1.1
prunus_persica	Prupe.3G069800_v2.0.a1 Prupe.7G230800_v2.0.a1
pyrus_communis	pycom02g03940 pycom09g12900
rosa_chinensis	RchiOBHm_Chr2g0090481 RchiOBHm_Chr2g0138141
rosa_laevigata	RLG00000016117 RLG00000019726
rosa_multiflora	Rmu_sc0004514.1_g000023 Rmu_sc0004514.1_g000024 Rmu_sc0004576.1_g000027
rosa_roxburghii	Rroxscaffold_2G00106440 Rroxscaffold_2G00151100
rosa_rugosa	Rorug02G0008400 Rorug02G0349900
rosa_samantha	Rh2AG053800 Rh2AG396500 Rh2BG053300 Rh2BG409900 Rh2CG055400 Rh2CG383000 Rh2DG054000 Rh2DG418200
rosa_wichuraiana	Rw2G004320 Rw2G032420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AccB7I	CCANNNNNTGG	2 cut(s)	246, 263
AciI	CCGC	4 cut(s)	10, 33, 133, 136
AclWI	GGATC	1 cut(s)	329
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	246, 263
AhdI	GACNNNNNGTC	1 cut(s)	179
AjnI	CCWGG	2 cut(s)	262, 415
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
Alw26I	GTCTC	1 cut(s)	265
AlwI	GGATC	1 cut(s)	329
Ama87I	CYCGRG	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	197
BanI	GGYRCC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	399
BccI	CCATC	2 cut(s)	184, 248
BceAI	ACGGC	2 cut(s)	20, 191
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BciT130I	CCWGG	2 cut(s)	264, 417
BcoDI	GTCTC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	2 cut(s)	264, 417
BmeRI	GACNNNNNGTC	1 cut(s)	179
BmeT110I	CYCGRG	1 cut(s)	197
BmiI	GGNNCC	3 cut(s)	14, 24, 195
BmrFI	CCNGG	2 cut(s)	264, 417
BmrI	ACTGGG	1 cut(s)	283
BmsI	GCATC	1 cut(s)	159
BmuI	ACTGGG	1 cut(s)	283
BpiI	GAAGAC	1 cut(s)	399
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	3 cut(s)	198, 263, 415
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	246, 263
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	2 cut(s)	103, 289
BseBI	CCWGG	2 cut(s)	264, 417
BseDI	CCNNGG	3 cut(s)	198, 263, 415
BseGI	GGATG	3 cut(s)	174, 195, 382
BseLI	CCNNNNNNNGG	2 cut(s)	246, 263
BseNI	ACTGG	2 cut(s)	103, 289
BseRI	GAGGAG	4 cut(s)	43, 63, 215, 283
BshNI	GGYRCC	1 cut(s)	22
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	246, 263
BsmAI	GTCTC	1 cut(s)	265
Bso31I	GGTCTC	1 cut(s)	265
BsoBI	CYCGRG	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	334
BspACI	CCGC	4 cut(s)	10, 33, 133, 136
BspLI	GGNNCC	3 cut(s)	14, 24, 195
BspPI	GGATC	1 cut(s)	329
BspT107I	GGYRCC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	265
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	103, 289
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	3 cut(s)	198, 263, 415
BssMI	GATC	1 cut(s)	334
Bst2UI	CCWGG	2 cut(s)	264, 417
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	3 cut(s)	61, 351, 423
BstC8I	GCNNGC	2 cut(s)	33, 330
BstF5I	GGATG	3 cut(s)	174, 195, 382
BstKTI	GATC	1 cut(s)	337
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	334
BstNI	CCWGG	2 cut(s)	264, 417
BstNSI	RCATGY	1 cut(s)	182
BstSCI	CCNGG	2 cut(s)	262, 415
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BtsCI	GGATG	3 cut(s)	174, 195, 382
Cac8I	GCNNGC	2 cut(s)	33, 330
Cfr10I	RCCGGY	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	4 cut(s)	15, 162, 194, 297
CviKI_1	RGCY	4 cut(s)	15, 162, 194, 297
CviQI	GTAC	1 cut(s)	106
DpnI	GATC	1 cut(s)	336
DpnII	GATC	1 cut(s)	334
DriI	GACNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	3 cut(s)	61, 351, 423
Eam1105I	GACNNNNNGTC	1 cut(s)	179
EarI	CTCTTC	3 cut(s)	61, 351, 423
EciI	GGCGGA	1 cut(s)	122
Eco31I	GGTCTC	1 cut(s)	265
Eco88I	CYCGRG	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	262, 415
FaeI	CATG	1 cut(s)	182
FaiI	YATR	5 cut(s)	84, 123, 180, 281, 302
FatI	CATG	1 cut(s)	178
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	3 cut(s)	181, 202, 389
Fsp4HI	GCNGC	1 cut(s)	136
GluI	GCNGC	1 cut(s)	136
HapII	CCGG	1 cut(s)	79
Hin1II	CATG	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	1 cut(s)	420
HpaII	CCGG	1 cut(s)	79
Hpy166II	GTNNAC	2 cut(s)	157, 213
Hpy188I	TCNGA	2 cut(s)	168, 189
Hpy188III	TCNNGA	4 cut(s)	197, 230, 341, 401
Hpy8I	GTNNAC	2 cut(s)	157, 213
Hpy99I	CGWCG	3 cut(s)	155, 177, 222
HpyAV	CCTTC	3 cut(s)	157, 173, 380
HpyCH4III	ACNGT	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	182
Kzo9I	GATC	1 cut(s)	334
LmnI	GCTCC	3 cut(s)	12, 199, 227
LweI	GCATC	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	336
MboI	GATC	1 cut(s)	334
MflI	RGATCY	1 cut(s)	334
MluCI	AATT	2 cut(s)	39, 109
MspI	CCGG	1 cut(s)	79
MspR9I	CCNGG	2 cut(s)	264, 417
MvaI	CCWGG	2 cut(s)	264, 417
NdeII	GATC	1 cut(s)	334
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	3 cut(s)	14, 24, 195
NspI	RCATGY	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	420
PflMI	CCANNNNNTGG	2 cut(s)	246, 263
PkrI	GCNGC	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	262, 415
PspGI	CCWGG	2 cut(s)	262, 415
PspN4I	GGNNCC	3 cut(s)	14, 24, 195
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	1 cut(s)	334
ScrFI	CCNGG	2 cut(s)	264, 417
SetI	ASST	5 cut(s)	53, 149, 212, 265, 313
SfaNI	GCATC	1 cut(s)	159
Sse9I	AATT	2 cut(s)	39, 109
SsiI	CCGC	4 cut(s)	10, 33, 133, 136
StyD4I	CCNGG	2 cut(s)	262, 415
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	231, 243
TasI	AATT	2 cut(s)	39, 109
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	420
TspDTI	ATGAA	2 cut(s)	317, 366
Van91I	CCANNNNNTGG	2 cut(s)	246, 263
XceI	RCATGY	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.