RchiOBHm_Chr2g0172251

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005842
Physical Location & Seq
Forward (+)
85712128 .. 85713044
917 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 642 bp
ATGGGTCACCAGAGCCGGACTCCTCCGGTGCCACGTAAACACCACTCACCGGATTCGAGTTCATCGGACGGTGGAGCCGCCGCAATCACCAGAGCGAAGAAGAGCCGCTACCCAGTAGACGACGACGACGACGACGGCGCCGGCGGTGATTGGGTCGAGTGCTCCGGCAAGTACTGCCGGTCATGCAGCGCCGGCATGATCGCCGATTGCGTGGCGCTGTGCTGCTGCCCCTGCGCGCTGGTCAACCTGTTGACTCTGGCCTTCGTGAAAGTGCCGTGGATGGTTGGGAGGAAGTGCTTGGGGTTAGGCGAGAACAAGAAGAAGAAGAAGGAAAACCAGAGCCAGGGGCAGAATCGGAAATCCAAAAAAAAGTGCAGGAGCAAGAAGAAGCAGGCTAGTAGTAGTCATCGGCATCAACGTTGCGCGGCGGAGGAGGAATTGCCGGCGCAGATATCGTGCTACGTGTACGGTTTTGATGATCAGGAGGAGGAAGGGGAAGAAGGGGAGGATTGTGTGAGTAGTGCAGAGAGGGTATGGCTGGAATTGTACCAGGTGGGACATTTGGGTTTTGGGAGGGTTTCGTTTAGTGGGGGTGGAGTTCAGTCCGTGCAGGGGAAGGGCAATTTGGGAAACATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.11

Weight (kDa)

8.38

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 28, 137
AccI GTMKAC 1 cut(s) 117
AccII CGCG 2 cut(s) 236, 425
AciI CCGC 6 cut(s) 78, 81, 106, 144, 425, 428
AclI AACGTT 1 cut(s) 418
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 3 cut(s) 173, 467, 548
AfiI CCNNNNNNNGG 3 cut(s) 49, 343, 612
AflIII ACRYGT 1 cut(s) 462
AjnI CCWGG 2 cut(s) 342, 549
AjuI GAANNNNNNNTTGG 2 cut(s) 608, 640
Alw21I GWGCWC 1 cut(s) 164
AoxI GGCC 1 cut(s) 258
ApeKI GCWGC 3 cut(s) 186, 222, 225
AspLEI GCGC 7 cut(s) 140, 191, 217, 236, 238, 425, 448
AsuHPI GGTGA 3 cut(s) 39, 79, 158
BanI GGYRCC 2 cut(s) 28, 137
BarI GAAGNNNNNNTAC 2 cut(s) 92, 124
Bbv12I GWGCWC 1 cut(s) 164
BbvI GCAGC 3 cut(s) 198, 209, 212
BccI CCATC 1 cut(s) 274
BceAI ACGGC 2 cut(s) 151, 259
BciT130I CCWGG 2 cut(s) 344, 551
BclI TGATCA 1 cut(s) 478
BfaI CTAG 1 cut(s) 396
BfoI RGCGCY 3 cut(s) 141, 192, 218
BisI GCNGC 7 cut(s) 78, 81, 106, 187, 223, 226, 426
BlsI GCNGC 7 cut(s) 79, 82, 107, 188, 224, 227, 427
BmcAI AGTACT 1 cut(s) 173
Bme1390I CCNGG 2 cut(s) 344, 551
BmiI GGNNCC 3 cut(s) 30, 76, 139
BmrFI CCNGG 2 cut(s) 344, 551
BmrI ACTGGG 1 cut(s) 107
BmsI GCATC 1 cut(s) 421
BmuI ACTGGG 1 cut(s) 107
BplI GAGNNNNNCTC 1 cut(s) 36
BsaAI YACGTR 2 cut(s) 35, 463
BsaHI GRCGYC 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 275, 343
BsaWI WCCGGW 2 cut(s) 25, 49
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 343, 612
Bse118I RCCGGY 4 cut(s) 140, 177, 191, 442
Bse1I ACTGG 1 cut(s) 113
BseBI CCWGG 2 cut(s) 344, 551
BseDI CCNNGG 2 cut(s) 275, 343
BseGI GGATG 1 cut(s) 285
BseLI CCNNNNNNNGG 3 cut(s) 49, 343, 612
BseNI ACTGG 1 cut(s) 113
BsePI GCGCGC 1 cut(s) 234
BseRI GAGGAG 3 cut(s) 12, 446, 500
BseXI GCAGC 3 cut(s) 198, 209, 212
BsgI GTGCAG 3 cut(s) 394, 543, 629
Bsh1236I CGCG 2 cut(s) 236, 425
BshFI GGCC 1 cut(s) 260
BshNI GGYRCC 2 cut(s) 28, 137
BsiHKAI GWGCWC 1 cut(s) 164
BsiSI CCGG 8 cut(s) 16, 26, 50, 141, 165, 178, 192, 443
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 3 cut(s) 49, 343, 612
BsmFI GGGAC 1 cut(s) 570
BsnI GGCC 1 cut(s) 260
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 2 cut(s) 198, 478
BspACI CCGC 6 cut(s) 78, 81, 106, 144, 425, 428
BspANI GGCC 1 cut(s) 260
BspFNI CGCG 2 cut(s) 236, 425
BspLI GGNNCC 3 cut(s) 30, 76, 139
BspQI GCTCTTC 1 cut(s) 95
BspT107I GGYRCC 2 cut(s) 28, 137
BsrFI RCCGGY 4 cut(s) 140, 177, 191, 442
BsrI ACTGG 1 cut(s) 113
BssAI RCCGGY 4 cut(s) 140, 177, 191, 442
BssECI CCNNGG 2 cut(s) 275, 343
BssHII GCGCGC 1 cut(s) 234
BssMI GATC 2 cut(s) 198, 478
BssNI GRCGYC 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 344, 551
Bst4CI ACNGT 2 cut(s) 71, 470
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 138
BstAPI GCANNNNNTGC 1 cut(s) 174
BstBAI YACGTR 2 cut(s) 35, 463
BstC8I GCNNGC 5 cut(s) 142, 193, 236, 393, 444
BstDSI CCRYGG 1 cut(s) 275
BstEII GGTNACC 1 cut(s) 5
BstF5I GGATG 1 cut(s) 285
BstFNI CGCG 2 cut(s) 236, 425
BstH2I RGCGCY 3 cut(s) 141, 192, 218
BstHHI GCGC 7 cut(s) 140, 191, 217, 236, 238, 425, 448
BstKTI GATC 2 cut(s) 201, 481
BstMBI GATC 2 cut(s) 198, 478
BstMWI GCNNNNNNNGC 4 cut(s) 174, 183, 192, 231
BstNI CCWGG 2 cut(s) 344, 551
BstPI GGTNACC 1 cut(s) 5
BstSCI CCNGG 2 cut(s) 342, 549
BstUI CGCG 2 cut(s) 236, 425
BstV1I GCAGC 3 cut(s) 198, 209, 212
BsuRI GGCC 1 cut(s) 260
BtgI CCRYGG 1 cut(s) 275
BtsCI GGATG 1 cut(s) 285
Cac8I GCNNGC 5 cut(s) 142, 193, 236, 393, 444
CfoI GCGC 7 cut(s) 140, 191, 217, 236, 238, 425, 448
Cfr10I RCCGGY 4 cut(s) 140, 177, 191, 442
CsiI ACCWGGT 1 cut(s) 549
Csp6I GTAC 3 cut(s) 172, 466, 547
CviAII CATG 3 cut(s) 183, 196, 634
CviJI RGCY 7 cut(s) 15, 77, 105, 260, 342, 395, 538
CviKI_1 RGCY 7 cut(s) 15, 77, 105, 260, 342, 395, 538
CviQI GTAC 3 cut(s) 172, 466, 547
DinI GGCGCC 1 cut(s) 139
DpnI GATC 2 cut(s) 200, 480
DpnII GATC 2 cut(s) 198, 478
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EciI GGCGGA 1 cut(s) 443
Eco32I GATATC 1 cut(s) 453
Eco91I GGTNACC 1 cut(s) 5
EcoO65I GGTNACC 1 cut(s) 5
EcoRII CCWGG 2 cut(s) 342, 549
EcoRV GATATC 1 cut(s) 453
EgeI GGCGCC 1 cut(s) 139
EheI GGCGCC 1 cut(s) 139
FaeI CATG 3 cut(s) 186, 199, 637
FaiI YATR 4 cut(s) 184, 197, 535, 635
FaqI GGGAC 1 cut(s) 570
FatI CATG 3 cut(s) 182, 195, 633
FbaI TGATCA 1 cut(s) 478
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 7 cut(s) 78, 81, 106, 187, 223, 226, 426
FokI GGATG 1 cut(s) 292
Fsp4HI GCNGC 7 cut(s) 78, 81, 106, 187, 223, 226, 426
FspBI CTAG 1 cut(s) 396
GlaI GCGC 7 cut(s) 139, 190, 216, 235, 237, 424, 447
GluI GCNGC 7 cut(s) 78, 81, 106, 187, 223, 226, 426
HaeII RGCGCY 3 cut(s) 141, 192, 218
HaeIII GGCC 1 cut(s) 260
HapII CCGG 8 cut(s) 16, 26, 50, 141, 165, 178, 192, 443
HhaI GCGC 7 cut(s) 140, 191, 217, 236, 238, 425, 448
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 3 cut(s) 186, 199, 637
Hin6I GCGC 7 cut(s) 138, 189, 215, 234, 236, 423, 446
HinP1I GCGC 7 cut(s) 138, 189, 215, 234, 236, 423, 446
HincII GTYRAC 2 cut(s) 244, 252
HindII GTYRAC 2 cut(s) 244, 252
HinfI GANTC 4 cut(s) 19, 53, 253, 352
HpaII CCGG 8 cut(s) 16, 26, 50, 141, 165, 178, 192, 443
HphI GGTGA 3 cut(s) 39, 79, 158
Hpy166II GTNNAC 5 cut(s) 38, 118, 244, 252, 466
Hpy188I TCNGA 2 cut(s) 67, 357
Hpy188III TCNNGA 2 cut(s) 265, 482
Hpy8I GTNNAC 5 cut(s) 38, 118, 244, 252, 466
Hpy99I CGWCG 5 cut(s) 125, 128, 131, 134, 137
HpyAV CCTTC 5 cut(s) 271, 322, 485, 494, 610
HpyCH4III ACNGT 2 cut(s) 71, 470
HpyCH4IV ACGT 3 cut(s) 34, 418, 462
HpyCH4V TGCA 4 cut(s) 186, 375, 524, 610
HpyF10VI GCNNNNNNNGC 4 cut(s) 174, 183, 192, 231
HpySE526I ACGT 3 cut(s) 34, 418, 462
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 3 cut(s) 186, 199, 637
HspAI GCGC 7 cut(s) 138, 189, 215, 234, 236, 423, 446
KasI GGCGCC 1 cut(s) 137
KroI GCCGGC 3 cut(s) 140, 191, 442
KroNI GCCGGC 3 cut(s) 142, 193, 444
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 2 cut(s) 198, 478
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 3 cut(s) 74, 167, 378
Lsp1109I GCAGC 3 cut(s) 198, 209, 212
LweI GCATC 1 cut(s) 421
MabI ACCWGGT 1 cut(s) 549
MaeI CTAG 1 cut(s) 396
MaeII ACGT 3 cut(s) 34, 418, 462
MaeIII GTNAC 1 cut(s) 5
MalI GATC 2 cut(s) 200, 480
MboI GATC 2 cut(s) 198, 478
MboII GAAGA 7 cut(s) 109, 112, 331, 334, 337, 397, 509
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 4 cut(s) 437, 542, 622, 637
Mly113I GGCGCC 1 cut(s) 138
MlyI GAGTC 2 cut(s) 13, 247
MnlI CCTC 9 cut(s) 33, 282, 424, 427, 478, 481, 499, 522, 567
MreI CGCCGGCG 1 cut(s) 140
MroNI GCCGGC 3 cut(s) 140, 191, 442
MspI CCGG 8 cut(s) 16, 26, 50, 141, 165, 178, 192, 443
MspR9I CCNGG 2 cut(s) 344, 551
MvaI CCWGG 2 cut(s) 344, 551
MvnI CGCG 2 cut(s) 236, 425
MwoI GCNNNNNNNGC 4 cut(s) 174, 183, 192, 231
NaeI GCCGGC 3 cut(s) 142, 193, 444
NarI GGCGCC 1 cut(s) 138
NdeII GATC 2 cut(s) 198, 478
NgoMIV GCCGGC 3 cut(s) 140, 191, 442
NlaIII CATG 3 cut(s) 186, 199, 637
NlaIV GGNNCC 3 cut(s) 30, 76, 139
NmuCI GTSAC 1 cut(s) 5
PauI GCGCGC 1 cut(s) 234
PciSI GCTCTTC 1 cut(s) 95
PcsI WCGNNNNNNNCGW 4 cut(s) 126, 129, 207, 415
PdiI GCCGGC 3 cut(s) 142, 193, 444
PfeI GAWTC 2 cut(s) 53, 352
PkrI GCNGC 7 cut(s) 79, 82, 107, 188, 224, 227, 427
PleI GAGTC 2 cut(s) 13, 247
PluTI GGCGCC 1 cut(s) 141
PpsI GAGTC 2 cut(s) 13, 247
Ppu21I YACGTR 2 cut(s) 35, 463
Psp1406I AACGTT 1 cut(s) 418
Psp6I CCWGG 2 cut(s) 342, 549
PspEI GGTNACC 1 cut(s) 5
PspGI CCWGG 2 cut(s) 342, 549
PspN4I GGNNCC 3 cut(s) 30, 76, 139
PteI GCGCGC 1 cut(s) 234
RsaI GTAC 3 cut(s) 173, 467, 548
RsaNI GTAC 3 cut(s) 172, 466, 547
SapI GCTCTTC 1 cut(s) 95
SatI GCNGC 7 cut(s) 78, 81, 106, 187, 223, 226, 426
Sau3AI GATC 2 cut(s) 198, 478
ScaI AGTACT 1 cut(s) 173
SchI GAGTC 2 cut(s) 13, 247
ScrFI CCNGG 2 cut(s) 344, 551
SduI GDGCHC 1 cut(s) 164
SetI ASST 5 cut(s) 37, 249, 421, 465, 555
SexAI ACCWGGT 1 cut(s) 549
SfaNI GCATC 1 cut(s) 421
SfoI GGCGCC 1 cut(s) 139
SgrAI CRCCGGYG 1 cut(s) 140
Sse9I AATT 4 cut(s) 437, 542, 622, 637
SsiI CCGC 6 cut(s) 78, 81, 106, 144, 425, 428
SspDI GGCGCC 1 cut(s) 137
SspMI CTAG 1 cut(s) 396
StyD4I CCNGG 2 cut(s) 342, 549
TaaI ACNGT 2 cut(s) 71, 470
TaiI ACGT 3 cut(s) 37, 421, 465
TaqI TCGA 2 cut(s) 56, 156
TasI AATT 4 cut(s) 437, 542, 622, 637
TatI WGTACW 1 cut(s) 171
TauI GCSGC 4 cut(s) 80, 83, 108, 428
TfiI GAWTC 2 cut(s) 53, 352
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 3 cut(s) 186, 222, 225
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 51
TspGWI ACGGA 1 cut(s) 595
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 1 cut(s) 396
ZrmI AGTACT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.