RchiOBHm_Chr1g0329291
ERF Family

Histidine phosphatase superfamily (branch 1)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003894
Physical Location & Seq
Reverse (-)
18768795 .. 18771885
3091 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 690 bp
ATGGGGGAGACGACGTCGTTCATGAGGAACAAATACTGGGTATTGAGGCACGGCAGGAGCATTCCAAATGAGAAAGGCCTCATTGTTTCCTCCATGGAAAATGGTACCCTCCCAGAATATCAACTGGCGCCACAAGGTGTTAATCAGGCTCAATTAGCTGCAGAATTGTTCACAAAGTTACTTGAGGAAAGTTGCATACCACTTGCAGATGTTCGCATTTGCTACTCTCCGTTTTCGAGAACAACTCAGACTGCTCGAATTGTTGCATCTGTCTTGAACATTCAATTTGAGGGTCATCAATGTAAGGTGATGGAAACCCTCCGCGAACGCTTCTTTGGTCCTTCATTTGAGCTTGGGTCTCGTGATGAATACCATGAGATCTATGGCACACTTGATGAGAAAGATCCTCTGATGAGGCCAGAAGGCGGAGAAAGTGTTGATGATGTTGCATCTAGACTTGCAGAAGCTATGGTAACTATGGAGTCTCTATTTCAAGGGTGCACGATCTTAGTTGTTAGTCATGGCGATCCCCTACAAATCTTGCAAGCTATATTGAATGCTACTAAGCTAAACACCGAATCCAGTTATGACGACTTGGCATCAAGAATTCAAAATGTTAGAGCTCCTTCCATCTTGTCACAGCACAGGAAATTTAACCTGCAGACTGGGGAGCTCCGGGCAGTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
His_Phos_1

Protein Analysis

229

Amino Acids

25.67

Weight (kDa)

5.31

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 13 - 189 1e-20 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 17
Acc36I ACCTGC 1 cut(s) 666
Acc65I GGTACC 1 cut(s) 104
AccB1I GGYRCC 2 cut(s) 104, 127
AccII CGCG 1 cut(s) 324
AciI CCGC 2 cut(s) 322, 426
AclWI GGATC 2 cut(s) 398, 521
AcsI RAATTY 2 cut(s) 606, 650
AcyI GRCGYC 2 cut(s) 14, 128
AdeI CACNNNGTG 1 cut(s) 137
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 425
AgsI TTSAA 5 cut(s) 277, 284, 494, 556, 611
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 7 cut(s) 158, 352, 467, 548, 568, 623, 673
AluI AGCT 7 cut(s) 158, 352, 467, 548, 568, 623, 673
Alw21I GWGCWC 3 cut(s) 503, 625, 675
Alw26I GTCTC 3 cut(s) 2, 363, 489
Alw44I GTGCAC 1 cut(s) 499
AlwI GGATC 2 cut(s) 398, 521
AoxI GGCC 2 cut(s) 76, 416
ApaLI GTGCAC 1 cut(s) 499
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 2 cut(s) 606, 650
Asp718I GGTACC 1 cut(s) 104
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 338
AsuC2I CCSGG 1 cut(s) 677
AsuHPI GGTGA 1 cut(s) 319
AvaII GGWCC 1 cut(s) 338
BaeGI GKGCMC 1 cut(s) 503
BanI GGYRCC 2 cut(s) 104, 127
BanII GRGCYC 2 cut(s) 625, 675
BauI CACGAG 1 cut(s) 360
Bbv12I GWGCWC 3 cut(s) 503, 625, 675
BbvI GCAGC 1 cut(s) 145
BccI CCATC 2 cut(s) 304, 638
BceAI ACGGC 1 cut(s) 67
BcnI CCSGG 1 cut(s) 677
BcoDI GTCTC 3 cut(s) 2, 363, 489
BfaI CTAG 1 cut(s) 453
BfmI CTRYAG 2 cut(s) 159, 659
BfoI RGCGCY 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 666
BglII AGATCT 1 cut(s) 378
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 677
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 2 cut(s) 106, 129
BmrFI CCNGG 1 cut(s) 677
BmrI ACTGGG 2 cut(s) 46, 675
BmsI GCATC 3 cut(s) 275, 458, 608
BmuI ACTGGG 2 cut(s) 46, 675
BplI GAGNNNNNCTC 2 cut(s) 229, 261
BpuEI CTTGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 677
BsaHI GRCGYC 2 cut(s) 14, 128
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 1 cut(s) 93
BsaXI ACNNNNNCTCC 3 cut(s) 29, 420, 450
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse1I ACTGG 4 cut(s) 41, 129, 582, 670
BseDI CCNNGG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 4 cut(s) 41, 129, 582, 670
BseSI GKGCMC 1 cut(s) 503
BseXI GCAGC 1 cut(s) 145
Bsh1236I CGCG 1 cut(s) 324
BshFI GGCC 2 cut(s) 78, 418
BshNI GGYRCC 2 cut(s) 104, 127
BsiHKAI GWGCWC 3 cut(s) 503, 625, 675
BsiSI CCGG 1 cut(s) 676
BslI CCNNNNNNNGG 1 cut(s) 425
BsmAI GTCTC 3 cut(s) 2, 363, 489
BsmBI CGTCTC 1 cut(s) 2
BsmI GAATGC 2 cut(s) 60, 562
BsnI GGCC 2 cut(s) 78, 418
Bso31I GGTCTC 1 cut(s) 363
Bsp1286I GDGCHC 3 cut(s) 503, 625, 675
Bsp143I GATC 4 cut(s) 378, 403, 504, 526
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 2 cut(s) 322, 426
BspANI GGCC 2 cut(s) 78, 418
BspCNI CTCAG 1 cut(s) 259
BspFNI CGCG 1 cut(s) 324
BspHI TCATGA 1 cut(s) 21
BspLI GGNNCC 2 cut(s) 106, 129
BspMAI CTGCAG 2 cut(s) 163, 663
BspMI ACCTGC 1 cut(s) 666
BspPI GGATC 2 cut(s) 398, 521
BspT107I GGYRCC 2 cut(s) 104, 127
BspTNI GGTCTC 1 cut(s) 363
BsrI ACTGG 4 cut(s) 41, 129, 582, 670
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 4 cut(s) 378, 403, 504, 526
BssNI GRCGYC 2 cut(s) 14, 128
BssSI CACGAG 1 cut(s) 360
BssT1I CCWWGG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 360
BstACI GRCGYC 2 cut(s) 14, 128
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 3 cut(s) 246, 508, 564
BstDSI CCRYGG 1 cut(s) 93
BstFNI CGCG 1 cut(s) 324
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 4 cut(s) 381, 406, 507, 529
BstMAI GTCTC 3 cut(s) 2, 363, 489
BstMBI GATC 4 cut(s) 378, 403, 504, 526
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 675
BstSFI CTRYAG 2 cut(s) 159, 659
BstSLI GKGCMC 1 cut(s) 503
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 1 cut(s) 145
BstX2I RGATCY 2 cut(s) 378, 403
BstYI RGATCY 2 cut(s) 378, 403
BsuRI GGCC 2 cut(s) 78, 418
BtgI CCRYGG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 666
Cac8I GCNNGC 1 cut(s) 546
CciI TCATGA 1 cut(s) 21
CfoI GCGC 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 338
Csp6I GTAC 1 cut(s) 105
CviAII CATG 4 cut(s) 22, 94, 374, 521
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 3 cut(s) 246, 508, 564
DinI GGCGCC 1 cut(s) 129
DpnI GATC 4 cut(s) 380, 405, 506, 528
DpnII GATC 4 cut(s) 378, 403, 504, 526
DraIII CACNNNGTG 1 cut(s) 137
EciI GGCGGA 1 cut(s) 441
Ecl136II GAGCTC 2 cut(s) 623, 673
Eco130I CCWWGG 1 cut(s) 93
Eco147I AGGCCT 1 cut(s) 78
Eco24I GRGCYC 2 cut(s) 625, 675
Eco31I GGTCTC 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 338
Eco53kI GAGCTC 2 cut(s) 623, 673
EcoICRI GAGCTC 2 cut(s) 623, 673
EcoRI GAATTC 1 cut(s) 606
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 2 cut(s) 625, 675
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 4 cut(s) 25, 97, 377, 524
FatI CATG 4 cut(s) 21, 93, 373, 520
Fnu4HI GCNGC 1 cut(s) 159
FriOI GRGCYC 2 cut(s) 625, 675
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 453
GlaI GCGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 159
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 2 cut(s) 78, 418
HapII CCGG 1 cut(s) 676
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 2 cut(s) 14, 128
Hin1II CATG 4 cut(s) 25, 97, 377, 524
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HinfI GANTC 2 cut(s) 482, 578
HpaII CCGG 1 cut(s) 676
HphI GGTGA 1 cut(s) 319
Hpy166II GTNNAC 2 cut(s) 171, 501
Hpy188I TCNGA 2 cut(s) 249, 411
Hpy188III TCNNGA 6 cut(s) 22, 237, 274, 362, 453, 603
Hpy8I GTNNAC 2 cut(s) 171, 501
Hpy99I CGWCG 2 cut(s) 16, 19
HpyAV CCTTC 3 cut(s) 351, 416, 636
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 9 cut(s) 161, 195, 206, 266, 449, 461, 501, 544, 661
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 3 cut(s) 246, 508, 564
HpySE526I ACGT 1 cut(s) 14
Hsp92I GRCGYC 2 cut(s) 14, 128
Hsp92II CATG 4 cut(s) 25, 97, 377, 524
HspAI GCGC 1 cut(s) 128
KasI GGCGCC 1 cut(s) 127
KpnI GGTACC 1 cut(s) 108
Kzo9I GATC 4 cut(s) 378, 403, 504, 526
LmnI GCTCC 4 cut(s) 57, 628, 670, 678
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 3 cut(s) 275, 458, 608
MaeI CTAG 1 cut(s) 453
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 3 cut(s) 177, 472, 636
MalI GATC 4 cut(s) 380, 405, 506, 528
MboI GATC 4 cut(s) 378, 403, 504, 526
MflI RGATCY 2 cut(s) 378, 403
MhlI GDGCHC 3 cut(s) 503, 625, 675
MluCI AATT 6 cut(s) 152, 164, 258, 284, 606, 650
Mly113I GGCGCC 1 cut(s) 128
MlyI GAGTC 1 cut(s) 491
MseI TTAA 2 cut(s) 141, 654
MspI CCGG 1 cut(s) 676
MspR9I CCNGG 1 cut(s) 677
Mva1269I GAATGC 2 cut(s) 60, 562
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 155
NarI GGCGCC 1 cut(s) 128
NciI CCSGG 1 cut(s) 677
NcoI CCATGG 1 cut(s) 93
NdeII GATC 4 cut(s) 378, 403, 504, 526
NlaIII CATG 4 cut(s) 25, 97, 377, 524
NlaIV GGNNCC 2 cut(s) 106, 129
NmuCI GTSAC 1 cut(s) 636
PagI TCATGA 1 cut(s) 21
PceI AGGCCT 1 cut(s) 78
PctI GAATGC 2 cut(s) 60, 562
PfeI GAWTC 1 cut(s) 578
PflFI GACNNNGTC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 1 cut(s) 490
PluTI GGCGCC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 490
Psp124BI GAGCTC 2 cut(s) 625, 675
PspN4I GGNNCC 2 cut(s) 106, 129
PspPI GGNCC 1 cut(s) 338
PstI CTGCAG 2 cut(s) 163, 663
PsuI RGATCY 2 cut(s) 378, 403
PsyI GACNNNGTC 1 cut(s) 13
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SacI GAGCTC 2 cut(s) 625, 675
SaqAI TTAA 2 cut(s) 141, 654
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 4 cut(s) 378, 403, 504, 526
Sau96I GGNCC 1 cut(s) 338
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 677
SduI GDGCHC 3 cut(s) 503, 625, 675
SfaNI GCATC 3 cut(s) 275, 458, 608
SfcI CTRYAG 2 cut(s) 159, 659
SfoI GGCGCC 1 cut(s) 129
SinI GGWCC 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 6 cut(s) 152, 164, 258, 284, 606, 650
SseBI AGGCCT 1 cut(s) 78
SsiI CCGC 2 cut(s) 322, 426
SspDI GGCGCC 1 cut(s) 127
SspMI CTAG 1 cut(s) 453
SstI GAGCTC 2 cut(s) 625, 675
StuI AGGCCT 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 675
StyI CCWWGG 1 cut(s) 93
TaiI ACGT 1 cut(s) 17
TaqI TCGA 2 cut(s) 236, 256
TasI AATT 6 cut(s) 152, 164, 258, 284, 606, 650
TfiI GAWTC 1 cut(s) 578
Tru1I TTAA 2 cut(s) 141, 654
Tru9I TTAA 2 cut(s) 141, 654
TseFI GTSAC 1 cut(s) 636
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 636
TspDTI ATGAA 3 cut(s) 10, 333, 381
TspGWI ACGGA 1 cut(s) 219
Tth111I GACNNNGTC 1 cut(s) 13
VneI GTGCAC 1 cut(s) 499
VpaK11BI GGWCC 1 cut(s) 338
XapI RAATTY 2 cut(s) 606, 650
XbaI TCTAGA 1 cut(s) 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 380
XspI CTAG 1 cut(s) 453
ZraI GACGTC 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.