Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012673

Physical Location & Seq

Genomic Coordinates Forward (+)

20635203 .. 20636315

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGATGGTTGAAGACCACAAGCGGTTGCAGCCTAATGTGAAAACCTATGCGATTTTGAGCAGAAAGTATCAAACACTGGTGAGCTCAAGGGTTGAACCTTTGCAAGAGGAAGCCGAACTTGGACATGAGATTGATTACATGGCCAGGTACATTGCAGAGGGAGGGCTTACTGGTGAACGCAAGCGATGGGTGCCTCGAAGAGGGAAAACTTCACAGAAACATGTAGTTGTAGCTGGGTCAAATTGTACAGTATATCTACAGAAATACGTAGTTGTAGCTGGGTCAAATTGTTTTTTTTTTTTAATACATCCCCAAGTTTTGCCACTGATGTTGGTGGCATTGAGAACACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

117

Amino Acids

13.43

Weight (kDa)

9.55

Isoelectric Point (pI)

65.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012673)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330901 RchiOBHm_Chr2g0171521
rosa_multiflora	Rmu_sc0000133.1_g000010 Rmu_sc0001356.1_g000013 Rmu_sc0004924.1_g000011
rosa_roxburghii	Rroxscaffold_4G00310330 Rroxscaffold_5G00342300
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh1BG054600 Rh1CG048000 Rh1CG199700 Rh2CG281400 Rh6BG289700 Rh6DG077300 Rh6DG266000 Rh7AG375700 Rh7AG405000
rosa_wichuraiana	Rw7G009430 Rw7G021360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AciI	CCGC	1 cut(s)	22
AcoI	YGGCCR	1 cut(s)	141
AfaI	GTAC	2 cut(s)	149, 247
AfiI	CCNNNNNNNGG	1 cut(s)	200
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	2 cut(s)	11, 95
AjnI	CCWGG	1 cut(s)	143
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AluBI	AGCT	3 cut(s)	84, 233, 278
AluI	AGCT	3 cut(s)	84, 233, 278
Alw21I	GWGCWC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	91, 185
BalI	TGGCCA	1 cut(s)	143
BanI	GGYRCC	1 cut(s)	190
BanII	GRGCYC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	180
BciT130I	CCWGG	1 cut(s)	145
BfmI	CTRYAG	1 cut(s)	257
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	70
BsaAI	YACGTR	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	81, 175
Bse3DI	GCAATG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	145
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMI	GCAATG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	81, 175
BseXI	GCAGC	1 cut(s)	40
BseYI	CCCAGC	2 cut(s)	233, 278
BshFI	GGCC	1 cut(s)	143
BshNI	GGYRCC	1 cut(s)	190
BsiHKAI	GWGCWC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	200
BsnI	GGCC	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp1407I	TGTACA	1 cut(s)	245
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	192
BspT107I	GGYRCC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	150
BsrGI	TGTACA	1 cut(s)	245
BsrI	ACTGG	2 cut(s)	81, 175
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	250
Bst6I	CTCTTC	1 cut(s)	193
BstAUI	TGTACA	1 cut(s)	245
BstBAI	YACGTR	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	182
BstENI	CCTNNNNNAGG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	307
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 190
BstNI	CCWGG	1 cut(s)	145
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	143
BstSFI	CTRYAG	1 cut(s)	257
BstSNI	TACGTA	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	143
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	3 cut(s)	74, 323, 349
Cac8I	GCNNGC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	148, 246
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	3 cut(s)	125, 139, 221
CviJI	RGCY	7 cut(s)	31, 84, 113, 143, 166, 233, 278
CviKI_1	RGCY	7 cut(s)	31, 84, 113, 143, 166, 233, 278
CviQI	GTAC	2 cut(s)	148, 246
EaeI	YGGCCR	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Ecl136II	GAGCTC	1 cut(s)	84
Eco105I	TACGTA	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	84
EcoNI	CCTNNNNNAGG	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	143
EcoT38I	GRGCYC	1 cut(s)	86
FaeI	CATG	3 cut(s)	128, 142, 224
FaiI	YATR	5 cut(s)	48, 126, 140, 222, 253
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FatI	CATG	3 cut(s)	124, 138, 220
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	1 cut(s)	294
FriOI	GRGCYC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	29
GluI	GCNGC	1 cut(s)	29
GsaI	CCCAGC	2 cut(s)	237, 282
HaeIII	GGCC	1 cut(s)	143
Hin1II	CATG	3 cut(s)	128, 142, 224
HphI	GGTGA	2 cut(s)	91, 185
Hpy166II	GTNNAC	1 cut(s)	176
Hpy8I	GTNNAC	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	3 cut(s)	28, 103, 155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 190
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	3 cut(s)	128, 142, 224
LpnPI	CCDG	6 cut(s)	62, 130, 156, 157, 219, 264
Lsp1109I	GCAGC	1 cut(s)	40
MaeII	ACGT	1 cut(s)	267
MboII	GAAGA	2 cut(s)	23, 210
MhlI	GDGCHC	1 cut(s)	86
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	2 cut(s)	241, 286
MluNI	TGGCCA	1 cut(s)	143
MnlI	CCTC	5 cut(s)	100, 151, 155, 194, 204
Mox20I	TGGCCA	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	143
MspR9I	CCNGG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	2 cut(s)	28, 190
NlaIII	CATG	3 cut(s)	128, 142, 224
NlaIV	GGNNCC	1 cut(s)	192
NspI	RCATGY	1 cut(s)	224
PciI	ACATGT	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	30
Ppu21I	YACGTR	1 cut(s)	268
PscI	ACATGT	1 cut(s)	220
Psp124BI	GAGCTC	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	143
PspFI	CCCAGC	2 cut(s)	233, 278
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	192
RsaI	GTAC	2 cut(s)	149, 247
RsaNI	GTAC	2 cut(s)	148, 246
SacI	GAGCTC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	7 cut(s)	47, 86, 100, 149, 235, 270, 280
SfcI	CTRYAG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
SnaBI	TACGTA	1 cut(s)	268
Sse9I	AATT	2 cut(s)	241, 286
SsiI	CCGC	1 cut(s)	22
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	196
TasI	AATT	2 cut(s)	241, 286
TatI	WGTACW	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	2 cut(s)	81, 330
TseI	GCWGC	1 cut(s)	28
TspRI	CASTG	2 cut(s)	81, 330
XagI	CCTNNNNNAGG	1 cut(s)	198
XceI	RCATGY	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.