Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012673

Physical Location & Seq

Genomic Coordinates Reverse (-)

32250056 .. 32258432

Gene Structure 8377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00310330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTCCAACAATTGTATTGCCGCACCAGTGAGTCCCGCATCTCCACGGCAAGAAAGGTTCAATCTTTATGAGTTTTATTCAATTTTTGCTTCACAATGGCTTCCGCTCACACTGAAATTAATAGTGCAAGATGTTGCTGAGTTACTTGGCATGATGGTTGAAGACCACAAGCGGTTGCAGCCTAATGTGAAAACCTATGCGATTTTGAGCAGAAAGTATCAAACACTGGTGAGCTCAAGGGTTGAACCTTTGCAAGAGGAAGCTGAACTTGGACATGAGATTGATTACATGGCCAGCGGAGCGAGGAAGCAGAACGGAGCTTCGCCGGAAAATCCGGAAAAATTCCGAGTTACGAGTTTCGGGGGTGTTGGGGATCATGGGTTCCAAGGATCCTGCTCGGTGGTTGACAAGGTGAATGGGGCAACACAGCTCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

145

Amino Acids

16.13

Weight (kDa)

6.29

Isoelectric Point (pI)

60.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012673)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330901 RchiOBHm_Chr2g0171521
rosa_multiflora	Rmu_sc0000133.1_g000010 Rmu_sc0001356.1_g000013 Rmu_sc0004924.1_g000011
rosa_roxburghii	Rroxscaffold_4G00310330 Rroxscaffold_5G00342300
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh1BG054600 Rh1CG048000 Rh1CG199700 Rh2CG281400 Rh6BG289700 Rh6DG077300 Rh6DG266000 Rh7AG375700 Rh7AG405000
rosa_wichuraiana	Rw7G009430 Rw7G021360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	106
AccIII	TCCGGA	1 cut(s)	334
AciI	CCGC	5 cut(s)	21, 36, 104, 172, 297
AclWI	GGATC	3 cut(s)	381, 384, 397
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	1 cut(s)	341
AgsI	TTSAA	4 cut(s)	61, 81, 161, 245
AjuI	GAANNNNNNNTTGG	2 cut(s)	252, 284
AloI	GAACNNNNNNTCC	2 cut(s)	365, 397
AluBI	AGCT	4 cut(s)	234, 263, 320, 430
AluI	AGCT	4 cut(s)	234, 263, 320, 430
Alw21I	GWGCWC	1 cut(s)	236
AlwI	GGATC	3 cut(s)	381, 384, 397
Aor13HI	TCCGGA	1 cut(s)	334
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	341
AseI	ATTAAT	1 cut(s)	119
AsuHPI	GGTGA	2 cut(s)	241, 424
BalI	TGGCCA	1 cut(s)	293
BamHI	GGATCC	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	1 cut(s)	148
BceAI	ACGGC	1 cut(s)	62
BisI	GCNGC	2 cut(s)	21, 179
BlsI	GCNGC	2 cut(s)	22, 180
BmiI	GGNNCC	2 cut(s)	383, 391
BmsI	GCATC	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	220
BsaJI	CCNNGG	2 cut(s)	44, 385
BsaWI	WCCGGW	2 cut(s)	334, 432
Bse1I	ACTGG	2 cut(s)	26, 231
BseAI	TCCGGA	1 cut(s)	334
BseDI	CCNNGG	2 cut(s)	44, 385
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	2 cut(s)	26, 231
BseXI	GCAGC	1 cut(s)	190
BshFI	GGCC	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	236
BsiSI	CCGG	3 cut(s)	326, 335, 433
BslFI	GGGAC	1 cut(s)	18
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp13I	TCCGGA	1 cut(s)	334
Bsp143I	GATC	2 cut(s)	373, 389
BspACI	CCGC	5 cut(s)	21, 36, 104, 172, 297
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	130
BspEI	TCCGGA	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	383, 391
BspPI	GGATC	3 cut(s)	381, 384, 397
BsrBI	CCGCTC	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	26, 231
BssECI	CCNNGG	2 cut(s)	44, 385
BssMI	GATC	2 cut(s)	373, 389
BssT1I	CCWWGG	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	44
BstKTI	GATC	2 cut(s)	376, 392
BstMBI	GATC	2 cut(s)	373, 389
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 299
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	293
BtgI	CCRYGG	1 cut(s)	44
BtsIMutI	CAGTG	3 cut(s)	33, 110, 224
Cac8I	GCNNGC	1 cut(s)	295
CviAII	CATG	4 cut(s)	151, 275, 289, 377
CviJI	RGCY	7 cut(s)	100, 181, 234, 263, 293, 320, 430
CviKI_1	RGCY	7 cut(s)	100, 181, 234, 263, 293, 320, 430
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	2 cut(s)	375, 391
DpnII	GATC	2 cut(s)	373, 389
EaeI	YGGCCR	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	236
Eco53kI	GAGCTC	1 cut(s)	234
EcoICRI	GAGCTC	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	236
ErhI	CCWWGG	1 cut(s)	385
FaeI	CATG	4 cut(s)	154, 278, 292, 380
FaiI	YATR	6 cut(s)	69, 152, 198, 276, 290, 378
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	4 cut(s)	150, 274, 288, 376
FauI	CCCGC	1 cut(s)	43
Fnu4HI	GCNGC	2 cut(s)	21, 179
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	2 cut(s)	21, 179
GluI	GCNGC	2 cut(s)	21, 179
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	3 cut(s)	326, 335, 433
Hin1II	CATG	4 cut(s)	154, 278, 292, 380
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	3 cut(s)	326, 335, 433
HphI	GGTGA	2 cut(s)	241, 424
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	1 cut(s)	347
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	1 cut(s)	406
HpyCH4V	TGCA	3 cut(s)	127, 178, 253
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 299
HpyF3I	CTNAG	1 cut(s)	138
Hsp92II	CATG	4 cut(s)	154, 278, 292, 380
Kpn2I	TCCGGA	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	373, 389
LmnI	GCTCC	3 cut(s)	299, 317, 435
LpnPI	CCDG	6 cut(s)	39, 212, 307, 339, 348, 406
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	141, 349
MalI	GATC	2 cut(s)	375, 391
MbiI	CCGCTC	1 cut(s)	106
MboI	GATC	2 cut(s)	373, 389
MboII	GAAGA	1 cut(s)	173
MfeI	CAATTG	1 cut(s)	10
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	1 cut(s)	236
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	4 cut(s)	10, 81, 116, 341
MluNI	TGGCCA	1 cut(s)	293
MlyI	GAGTC	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	2 cut(s)	250, 297
Mox20I	TGGCCA	1 cut(s)	293
MroI	TCCGGA	1 cut(s)	334
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	1 cut(s)	119
Msp20I	TGGCCA	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	297
MspI	CCGG	3 cut(s)	326, 335, 433
MunI	CAATTG	1 cut(s)	10
MwoI	GCNNNNNNNGC	2 cut(s)	178, 299
NdeII	GATC	2 cut(s)	373, 389
NlaIII	CATG	4 cut(s)	154, 278, 292, 380
NlaIV	GGNNCC	2 cut(s)	383, 391
PkrI	GCNGC	2 cut(s)	22, 180
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PshBI	ATTAAT	1 cut(s)	119
Psp124BI	GAGCTC	1 cut(s)	236
PspN4I	GGNNCC	2 cut(s)	383, 391
PsuI	RGATCY	1 cut(s)	389
SacI	GAGCTC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	2 cut(s)	21, 179
Sau3AI	GATC	2 cut(s)	373, 389
SchI	GAGTC	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	236
SetI	ASST	8 cut(s)	59, 197, 236, 250, 265, 322, 414, 432
SfaNI	GCATC	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	4 cut(s)	10, 81, 116, 341
SsiI	CCGC	5 cut(s)	21, 36, 104, 172, 297
SstI	GAGCTC	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	385
TasI	AATT	4 cut(s)	10, 81, 116, 341
TauI	GCSGC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	3 cut(s)	33, 117, 231
TseI	GCWGC	1 cut(s)	178
TspGWI	ACGGA	1 cut(s)	330
TspRI	CASTG	3 cut(s)	33, 117, 231
VspI	ATTAAT	1 cut(s)	119
XapI	RAATTY	1 cut(s)	341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.