Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000133.1

Orthogroup ID

OG0012673

Physical Location & Seq

Genomic Coordinates Forward (+)

36735 .. 39372

Gene Structure 2638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000133.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgaccaagccctctcttcatgctcttcctcttcgatttccctgttcttggtttgaagatatttttttttcgaatcagactggcggtctgttgagatcaaggaggctttggtggtctgttagcggtggagtggcgtatctggatttgttgtatcattctccgactccgacggttgtttggatatactcggtggtgcaggcagatgttaataaggctataaagaggaggtgtggaatccaaagaagaaggatttttagcaaagaaaagctgcccagaaatatagtgcaagatgttgctgagttacttggcatgatggttgaagaccacaagcggttgcagcctaatgtgaaaacctatgctacatcagtccttggagttttaagacagacccaaattccaccgcaagctaggattttgagcagaaagtatcaaacactggtgagctcaagggttgaacctttacaagaggaagccgaacttggacatgagattgattacatggccaggtacattgcagagggagggcttactggtgaacgcaagcgatgggtgcctcgaagagggaaaacttcacagaaatatgtagttgtagctagtatggattgtcccaatagcacctctaatagaggggactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

211

Amino Acids

24.19

Weight (kDa)

9.96

Isoelectric Point (pI)

66.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012673)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330901 RchiOBHm_Chr2g0171521
rosa_multiflora	Rmu_sc0000133.1_g000010 Rmu_sc0001356.1_g000013 Rmu_sc0004924.1_g000011
rosa_roxburghii	Rroxscaffold_4G00310330 Rroxscaffold_5G00342300
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh1BG054600 Rh1CG048000 Rh1CG199700 Rh2CG281400 Rh6BG289700 Rh6DG077300 Rh6DG266000 Rh7AG375700 Rh7AG405000
rosa_wichuraiana	Rw7G009430 Rw7G021360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	550
AciI	CCGC	4 cut(s)	84, 123, 331, 401
AcoI	YGGCCR	1 cut(s)	501
AcsI	RAATTY	1 cut(s)	393
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	2 cut(s)	48, 560
AgsI	TTSAA	3 cut(s)	56, 320, 455
AhdI	GACNNNNNGTC	1 cut(s)	84
AjnI	CCWGG	1 cut(s)	503
AjuI	GAANNNNNNNTTGG	2 cut(s)	462, 494
AluBI	AGCT	4 cut(s)	268, 407, 444, 593
AluI	AGCT	4 cut(s)	268, 407, 444, 593
Alw21I	GWGCWC	1 cut(s)	446
AoxI	GGCC	1 cut(s)	501
ApeKI	GCWGC	2 cut(s)	268, 337
ApoI	RAATTY	1 cut(s)	393
AsuHPI	GGTGA	2 cut(s)	451, 545
AsuII	TTCGAA	1 cut(s)	71
BalI	TGGCCA	1 cut(s)	503
BanI	GGYRCC	1 cut(s)	550
BanII	GRGCYC	1 cut(s)	446
BbsI	GAAGAC	1 cut(s)	327
Bbv12I	GWGCWC	1 cut(s)	446
BbvI	GCAGC	2 cut(s)	255, 349
BccI	CCATC	2 cut(s)	307, 540
BciT130I	CCWGG	1 cut(s)	505
BfaI	CTAG	2 cut(s)	408, 594
BisI	GCNGC	2 cut(s)	269, 338
BlsI	GCNGC	2 cut(s)	270, 339
Bme1390I	CCNGG	1 cut(s)	505
BmeRI	GACNNNNNGTC	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	552
BmrFI	CCNGG	1 cut(s)	505
BpiI	GAAGAC	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	430
BsaJI	CCNNGG	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 560
Bse1I	ACTGG	3 cut(s)	85, 441, 535
Bse3DI	GCAATG	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	1 cut(s)	370
BseLI	CCNNNNNNNGG	2 cut(s)	48, 560
BseMI	GCAATG	1 cut(s)	510
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	3 cut(s)	85, 441, 535
BseRI	GAGGAG	1 cut(s)	238
BseXI	GCAGC	2 cut(s)	255, 349
BsgI	GTGCAG	1 cut(s)	215
BshFI	GGCC	1 cut(s)	503
BshNI	GGYRCC	1 cut(s)	550
BsiHKAI	GWGCWC	1 cut(s)	446
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	2 cut(s)	48, 560
BsmFI	GGGAC	1 cut(s)	591
BsnI	GGCC	1 cut(s)	503
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp143I	GATC	1 cut(s)	95
BspACI	CCGC	4 cut(s)	84, 123, 331, 401
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	1 cut(s)	552
BspQI	GCTCTTC	1 cut(s)	30
BspT104I	TTCGAA	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	550
BsrDI	GCAATG	1 cut(s)	510
BsrI	ACTGG	3 cut(s)	85, 441, 535
BssECI	CCNNGG	1 cut(s)	370
BssMI	GATC	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	370
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	1 cut(s)	172
Bst6I	CTCTTC	4 cut(s)	21, 30, 36, 553
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	3 cut(s)	198, 405, 542
BstDEI	CTNAG	1 cut(s)	297
BstENI	CCTNNNNNAGG	1 cut(s)	558
BstKTI	GATC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	95
BstMWI	GCNNNNNNNGC	2 cut(s)	337, 550
BstNI	CCWGG	1 cut(s)	505
BstSCI	CCNGG	1 cut(s)	503
BstV1I	GCAGC	2 cut(s)	255, 349
BstV2I	GAAGAC	1 cut(s)	327
BsuRI	GGCC	1 cut(s)	503
BtgZI	GCGATG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	434
Cac8I	GCNNGC	3 cut(s)	198, 405, 542
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	4 cut(s)	20, 310, 485, 499
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	1 cut(s)	297
DpnI	GATC	1 cut(s)	97
DpnII	GATC	1 cut(s)	95
DriI	GACNNNNNGTC	1 cut(s)	84
EaeI	YGGCCR	1 cut(s)	501
Eam1104I	CTCTTC	4 cut(s)	21, 30, 36, 553
Eam1105I	GACNNNNNGTC	1 cut(s)	84
EarI	CTCTTC	4 cut(s)	21, 30, 36, 553
Ecl136II	GAGCTC	1 cut(s)	444
Eco130I	CCWWGG	1 cut(s)	370
Eco24I	GRGCYC	1 cut(s)	446
Eco53kI	GAGCTC	1 cut(s)	444
EcoICRI	GAGCTC	1 cut(s)	444
EcoNI	CCTNNNNNAGG	1 cut(s)	558
EcoRII	CCWGG	1 cut(s)	503
EcoT14I	CCWWGG	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	446
ErhI	CCWWGG	1 cut(s)	370
FaeI	CATG	4 cut(s)	23, 313, 488, 502
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	4 cut(s)	19, 309, 484, 498
Fnu4HI	GCNGC	2 cut(s)	269, 338
FriOI	GRGCYC	1 cut(s)	446
Fsp4HI	GCNGC	2 cut(s)	269, 338
FspBI	CTAG	2 cut(s)	408, 594
GluI	GCNGC	2 cut(s)	269, 338
HaeIII	GGCC	1 cut(s)	503
Hin1II	CATG	4 cut(s)	23, 313, 488, 502
HinfI	GANTC	3 cut(s)	73, 163, 234
HphI	GGTGA	2 cut(s)	451, 545
Hpy166II	GTNNAC	1 cut(s)	536
Hpy188I	TCNGA	3 cut(s)	78, 162, 168
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	536
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	4 cut(s)	196, 286, 337, 515
HpyF10VI	GCNNNNNNNGC	2 cut(s)	337, 550
HpyF3I	CTNAG	1 cut(s)	297
Hsp92II	CATG	4 cut(s)	23, 313, 488, 502
Kzo9I	GATC	1 cut(s)	95
LguI	GCTCTTC	1 cut(s)	30
LpnPI	CCDG	9 cut(s)	55, 66, 125, 182, 286, 422, 490, 516, 517
Lsp1109I	GCAGC	2 cut(s)	255, 349
MaeI	CTAG	2 cut(s)	408, 594
MaeIII	GTNAC	1 cut(s)	300
MalI	GATC	1 cut(s)	97
MboI	GATC	1 cut(s)	95
MboII	GAAGA	7 cut(s)	8, 17, 23, 68, 255, 332, 570
MhlI	GDGCHC	1 cut(s)	446
MlsI	TGGCCA	1 cut(s)	503
MluCI	AATT	1 cut(s)	393
MluNI	TGGCCA	1 cut(s)	503
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	2 cut(s)	185, 191
Mox20I	TGGCCA	1 cut(s)	503
MscI	TGGCCA	1 cut(s)	503
MseI	TTAA	2 cut(s)	207, 380
Msp20I	TGGCCA	1 cut(s)	503
MspR9I	CCNGG	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	505
MwoI	GCNNNNNNNGC	2 cut(s)	337, 550
NdeII	GATC	1 cut(s)	95
NlaIII	CATG	4 cut(s)	23, 313, 488, 502
NlaIV	GGNNCC	1 cut(s)	552
NspV	TTCGAA	1 cut(s)	71
PciSI	GCTCTTC	1 cut(s)	30
PfeI	GAWTC	2 cut(s)	73, 234
PkrI	GCNGC	2 cut(s)	270, 339
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp124BI	GAGCTC	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	503
PspN4I	GGNNCC	1 cut(s)	552
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
SacI	GAGCTC	1 cut(s)	446
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	2 cut(s)	207, 380
SatI	GCNGC	2 cut(s)	269, 338
Sau3AI	GATC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	505
SduI	GDGCHC	1 cut(s)	446
SetI	ASST	9 cut(s)	230, 270, 356, 409, 446, 460, 509, 595, 620
SfuI	TTCGAA	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	1 cut(s)	393
SsiI	CCGC	4 cut(s)	84, 123, 331, 401
SspMI	CTAG	2 cut(s)	408, 594
SstI	GAGCTC	1 cut(s)	446
StyD4I	CCNGG	1 cut(s)	503
StyI	CCWWGG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	3 cut(s)	34, 71, 556
TasI	AATT	1 cut(s)	393
TfiI	GAWTC	2 cut(s)	73, 234
Tru1I	TTAA	2 cut(s)	207, 380
Tru9I	TTAA	2 cut(s)	207, 380
TscAI	CASTG	1 cut(s)	441
TseI	GCWGC	2 cut(s)	268, 337
TspDTI	ATGAA	1 cut(s)	8
TspRI	CASTG	1 cut(s)	441
XagI	CCTNNNNNAGG	1 cut(s)	558
XapI	RAATTY	1 cut(s)	393
XspI	CTAG	2 cut(s)	408, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.