Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0012673

Physical Location & Seq

Genomic Coordinates Forward (+)

45775474 .. 45776239

Gene Structure 766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG266000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCTCCATGGAGTTTTAAGACAGACCCAAATTCCACCGCGAGCCAGGATTTTGAGCAGAAAGTATCAAACACTGGTGAGCTCAAGGGTTGAACCTTTGCAAGAGGAAGTTGAACTTGGACATGAGATTGATTATATGGCCAGGTACGTTGCAGAGGGAGGGCTTACTGGTGAACGCAAGCGATGGGTGCCTCAAAGAGGGAATACTTCACAGAAATACGTAGTTATAGCTGGGTCAAATTGTACAGTATATCTACATAAATACGTAGTTGTAGCTGGGTCAATTTTTTTTTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

99

Amino Acids

11.37

Weight (kDa)

9.66

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0012673)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330901 RchiOBHm_Chr2g0171521
rosa_multiflora	Rmu_sc0000133.1_g000010 Rmu_sc0001356.1_g000013 Rmu_sc0004924.1_g000011
rosa_roxburghii	Rroxscaffold_4G00310330 Rroxscaffold_5G00342300
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh1BG054600 Rh1CG048000 Rh1CG199700 Rh2CG281400 Rh6BG289700 Rh6DG077300 Rh6DG266000 Rh7AG375700 Rh7AG405000
rosa_wichuraiana	Rw7G009430 Rw7G021360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	187
AccII	CGCG	1 cut(s)	40
AciI	CCGC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	30
AfaI	GTAC	2 cut(s)	146, 244
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	92, 113
AjnI	CCWGG	2 cut(s)	44, 140
AjuI	GAANNNNNNNTTGG	2 cut(s)	99, 131
AluBI	AGCT	3 cut(s)	81, 230, 275
AluI	AGCT	3 cut(s)	81, 230, 275
Alw21I	GWGCWC	1 cut(s)	83
AoxI	GGCC	1 cut(s)	138
ApoI	RAATTY	1 cut(s)	30
AsuHPI	GGTGA	2 cut(s)	88, 182
BalI	TGGCCA	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	187
BanII	GRGCYC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	83
BccI	CCATC	1 cut(s)	177
BciT130I	CCWGG	2 cut(s)	46, 142
Bme1390I	CCNGG	2 cut(s)	46, 142
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	2 cut(s)	46, 142
BpuEI	CTTGAG	1 cut(s)	67
BsaAI	YACGTR	2 cut(s)	220, 265
BsaJI	CCNNGG	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	2 cut(s)	78, 172
BseBI	CCWGG	2 cut(s)	46, 142
BseDI	CCNNGG	1 cut(s)	7
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseNI	ACTGG	2 cut(s)	78, 172
BseYI	CCCAGC	2 cut(s)	230, 275
Bsh1236I	CGCG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	140
BshNI	GGYRCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	197
BsnI	GGCC	1 cut(s)	140
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp1407I	TGTACA	1 cut(s)	242
Bsp19I	CCATGG	1 cut(s)	7
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	187
BsrGI	TGTACA	1 cut(s)	242
BsrI	ACTGG	2 cut(s)	78, 172
BssECI	CCNNGG	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	7
Bst2UI	CCWGG	2 cut(s)	46, 142
Bst4CI	ACNGT	1 cut(s)	247
BstAUI	TGTACA	1 cut(s)	242
BstBAI	YACGTR	2 cut(s)	220, 265
BstC8I	GCNNGC	2 cut(s)	42, 179
BstDSI	CCRYGG	1 cut(s)	7
BstENI	CCTNNNNNAGG	1 cut(s)	195
BstFNI	CGCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	2 cut(s)	46, 142
BstSCI	CCNGG	2 cut(s)	44, 140
BstSNI	TACGTA	2 cut(s)	220, 265
BstUI	CGCG	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	140
BtgI	CCRYGG	1 cut(s)	7
BtgZI	GCGATG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	71
Cac8I	GCNNGC	2 cut(s)	42, 179
Csp6I	GTAC	2 cut(s)	145, 243
CviAII	CATG	2 cut(s)	8, 122
CviJI	RGCY	6 cut(s)	44, 81, 140, 163, 230, 275
CviKI_1	RGCY	6 cut(s)	44, 81, 140, 163, 230, 275
CviQI	GTAC	2 cut(s)	145, 243
EaeI	YGGCCR	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	81
Eco105I	TACGTA	2 cut(s)	220, 265
Eco130I	CCWWGG	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	83
Eco53kI	GAGCTC	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	81
EcoNI	CCTNNNNNAGG	1 cut(s)	195
EcoRII	CCWGG	2 cut(s)	44, 140
EcoT14I	CCWWGG	1 cut(s)	7
EcoT38I	GRGCYC	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	7
FaeI	CATG	2 cut(s)	11, 125
FaiI	YATR	7 cut(s)	9, 123, 135, 137, 227, 250, 258
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FatI	CATG	2 cut(s)	7, 121
FriOI	GRGCYC	1 cut(s)	83
GsaI	CCCAGC	2 cut(s)	234, 279
HaeIII	GGCC	1 cut(s)	140
Hin1II	CATG	2 cut(s)	11, 125
HphI	GGTGA	2 cut(s)	88, 182
Hpy166II	GTNNAC	1 cut(s)	173
Hpy8I	GTNNAC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	3 cut(s)	147, 219, 264
HpyCH4V	TGCA	2 cut(s)	100, 152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpySE526I	ACGT	3 cut(s)	147, 219, 264
Hsp92II	CATG	2 cut(s)	11, 125
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	8 cut(s)	31, 58, 59, 127, 153, 154, 216, 261
MaeII	ACGT	3 cut(s)	147, 219, 264
MhlI	GDGCHC	1 cut(s)	83
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	3 cut(s)	30, 238, 282
MluNI	TGGCCA	1 cut(s)	140
MnlI	CCTC	5 cut(s)	97, 148, 152, 191, 201
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	2 cut(s)	17, 298
Msp20I	TGGCCA	1 cut(s)	140
MspR9I	CCNGG	2 cut(s)	46, 142
MvaI	CCWGG	2 cut(s)	46, 142
MvnI	CGCG	1 cut(s)	40
MwoI	GCNNNNNNNGC	1 cut(s)	187
NcoI	CCATGG	1 cut(s)	7
NlaIII	CATG	2 cut(s)	11, 125
NlaIV	GGNNCC	1 cut(s)	189
Ppu21I	YACGTR	2 cut(s)	220, 265
Psp124BI	GAGCTC	1 cut(s)	83
Psp6I	CCWGG	2 cut(s)	44, 140
PspFI	CCCAGC	2 cut(s)	230, 275
PspGI	CCWGG	2 cut(s)	44, 140
PspN4I	GGNNCC	1 cut(s)	189
RsaI	GTAC	2 cut(s)	146, 244
RsaNI	GTAC	2 cut(s)	145, 243
SacI	GAGCTC	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	17, 298
ScrFI	CCNGG	2 cut(s)	46, 142
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	8 cut(s)	83, 97, 146, 150, 222, 232, 267, 277
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
SnaBI	TACGTA	2 cut(s)	220, 265
Sse9I	AATT	3 cut(s)	30, 238, 282
SsiI	CCGC	1 cut(s)	38
SstI	GAGCTC	1 cut(s)	83
StyD4I	CCNGG	2 cut(s)	44, 140
StyI	CCWWGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	3 cut(s)	150, 222, 267
TasI	AATT	3 cut(s)	30, 238, 282
TatI	WGTACW	1 cut(s)	242
Tru1I	TTAA	2 cut(s)	17, 298
Tru9I	TTAA	2 cut(s)	17, 298
TscAI	CASTG	1 cut(s)	78
TspRI	CASTG	1 cut(s)	78
XagI	CCTNNNNNAGG	1 cut(s)	195
XapI	RAATTY	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.