Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0330901 RchiOBHm_Chr2g0171521 |
| rosa_multiflora | Rmu_sc0000133.1_g000010 Rmu_sc0001356.1_g000013 Rmu_sc0004924.1_g000011 |
| rosa_roxburghii | Rroxscaffold_4G00310330 Rroxscaffold_5G00342300 |
| rosa_rugosa | Rorug03G0343800 |
| rosa_samantha | Rh1BG054600 Rh1CG048000 Rh1CG199700 Rh2CG281400 Rh6BG289700 Rh6DG077300 Rh6DG266000 Rh7AG375700 Rh7AG405000 |
| rosa_wichuraiana | Rw7G009430 Rw7G021360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 397 |
| AccII | CGCG | 1 cut(s) | 250 |
| AciI | CCGC | 2 cut(s) | 178, 248 |
| AcoI | YGGCCR | 1 cut(s) | 348 |
| AcsI | RAATTY | 1 cut(s) | 240 |
| AfaI | GTAC | 2 cut(s) | 356, 454 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 407 |
| AgsI | TTSAA | 4 cut(s) | 67, 99, 167, 302 |
| AjnI | CCWGG | 2 cut(s) | 254, 350 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 309, 341 |
| AluBI | AGCT | 3 cut(s) | 291, 440, 485 |
| AluI | AGCT | 3 cut(s) | 291, 440, 485 |
| Alw21I | GWGCWC | 1 cut(s) | 293 |
| AoxI | GGCC | 1 cut(s) | 348 |
| ApeKI | GCWGC | 2 cut(s) | 41, 184 |
| ApoI | RAATTY | 1 cut(s) | 240 |
| AsuHPI | GGTGA | 2 cut(s) | 298, 392 |
| BalI | TGGCCA | 1 cut(s) | 350 |
| BanI | GGYRCC | 1 cut(s) | 397 |
| BanII | GRGCYC | 1 cut(s) | 293 |
| BbsI | GAAGAC | 1 cut(s) | 174 |
| Bbv12I | GWGCWC | 1 cut(s) | 293 |
| BbvI | GCAGC | 2 cut(s) | 28, 196 |
| BccI | CCATC | 2 cut(s) | 154, 387 |
| BciT130I | CCWGG | 2 cut(s) | 256, 352 |
| BfmI | CTRYAG | 2 cut(s) | 42, 464 |
| BisI | GCNGC | 2 cut(s) | 42, 185 |
| BlsI | GCNGC | 2 cut(s) | 43, 186 |
| Bme1390I | CCNGG | 2 cut(s) | 256, 352 |
| BmiI | GGNNCC | 1 cut(s) | 399 |
| BmrFI | CCNGG | 2 cut(s) | 256, 352 |
| BpiI | GAAGAC | 1 cut(s) | 174 |
| BpuEI | CTTGAG | 1 cut(s) | 277 |
| BsaAI | YACGTR | 1 cut(s) | 475 |
| BsaJI | CCNNGG | 1 cut(s) | 217 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 407 |
| Bse1I | ACTGG | 2 cut(s) | 288, 382 |
| Bse3DI | GCAATG | 1 cut(s) | 357 |
| BseBI | CCWGG | 2 cut(s) | 256, 352 |
| BseDI | CCNNGG | 1 cut(s) | 217 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 407 |
| BseMI | GCAATG | 1 cut(s) | 357 |
| BseMII | CTCAG | 1 cut(s) | 135 |
| BseNI | ACTGG | 2 cut(s) | 288, 382 |
| BseXI | GCAGC | 2 cut(s) | 28, 196 |
| BseYI | CCCAGC | 2 cut(s) | 440, 485 |
| Bsh1236I | CGCG | 1 cut(s) | 250 |
| BshFI | GGCC | 1 cut(s) | 350 |
| BshNI | GGYRCC | 1 cut(s) | 397 |
| BsiHKAI | GWGCWC | 1 cut(s) | 293 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 407 |
| BsnI | GGCC | 1 cut(s) | 350 |
| Bsp1286I | GDGCHC | 1 cut(s) | 293 |
| Bsp1407I | TGTACA | 1 cut(s) | 452 |
| BspACI | CCGC | 2 cut(s) | 178, 248 |
| BspANI | GGCC | 1 cut(s) | 350 |
| BspCNI | CTCAG | 1 cut(s) | 136 |
| BspFNI | CGCG | 1 cut(s) | 250 |
| BspLI | GGNNCC | 1 cut(s) | 399 |
| BspMAI | CTGCAG | 1 cut(s) | 46 |
| BspT107I | GGYRCC | 1 cut(s) | 397 |
| BsrDI | GCAATG | 1 cut(s) | 357 |
| BsrGI | TGTACA | 1 cut(s) | 452 |
| BsrI | ACTGG | 2 cut(s) | 288, 382 |
| BssECI | CCNNGG | 1 cut(s) | 217 |
| BssT1I | CCWWGG | 1 cut(s) | 217 |
| Bst2UI | CCWGG | 2 cut(s) | 256, 352 |
| Bst4CI | ACNGT | 1 cut(s) | 457 |
| Bst6I | CTCTTC | 1 cut(s) | 400 |
| BstAUI | TGTACA | 1 cut(s) | 452 |
| BstBAI | YACGTR | 1 cut(s) | 475 |
| BstC8I | GCNNGC | 2 cut(s) | 39, 252 |
| BstDEI | CTNAG | 1 cut(s) | 144 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 405 |
| BstFNI | CGCG | 1 cut(s) | 250 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 184, 397 |
| BstNI | CCWGG | 2 cut(s) | 256, 352 |
| BstSCI | CCNGG | 2 cut(s) | 254, 350 |
| BstSFI | CTRYAG | 2 cut(s) | 42, 464 |
| BstSNI | TACGTA | 1 cut(s) | 475 |
| BstUI | CGCG | 1 cut(s) | 250 |
| BstV1I | GCAGC | 2 cut(s) | 28, 196 |
| BstV2I | GAAGAC | 1 cut(s) | 174 |
| BsuRI | GGCC | 1 cut(s) | 350 |
| BtgZI | GCGATG | 1 cut(s) | 406 |
| BtsIMutI | CAGTG | 1 cut(s) | 281 |
| Cac8I | GCNNGC | 2 cut(s) | 39, 252 |
| Csp6I | GTAC | 2 cut(s) | 355, 453 |
| CviAII | CATG | 3 cut(s) | 157, 332, 346 |
| CviQI | GTAC | 2 cut(s) | 355, 453 |
| DdeI | CTNAG | 1 cut(s) | 144 |
| EaeI | YGGCCR | 1 cut(s) | 348 |
| Eam1104I | CTCTTC | 1 cut(s) | 400 |
| EarI | CTCTTC | 1 cut(s) | 400 |
| Ecl136II | GAGCTC | 1 cut(s) | 291 |
| Eco105I | TACGTA | 1 cut(s) | 475 |
| Eco130I | CCWWGG | 1 cut(s) | 217 |
| Eco24I | GRGCYC | 1 cut(s) | 293 |
| Eco53kI | GAGCTC | 1 cut(s) | 291 |
| EcoICRI | GAGCTC | 1 cut(s) | 291 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 405 |
| EcoRII | CCWGG | 2 cut(s) | 254, 350 |
| EcoT14I | CCWWGG | 1 cut(s) | 217 |
| EcoT38I | GRGCYC | 1 cut(s) | 293 |
| ErhI | CCWWGG | 1 cut(s) | 217 |
| FaeI | CATG | 3 cut(s) | 160, 335, 349 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 309, 341 |
| FatI | CATG | 3 cut(s) | 156, 331, 345 |
| Fnu4HI | GCNGC | 2 cut(s) | 42, 185 |
| FriOI | GRGCYC | 1 cut(s) | 293 |
| Fsp4HI | GCNGC | 2 cut(s) | 42, 185 |
| GluI | GCNGC | 2 cut(s) | 42, 185 |
| GsaI | CCCAGC | 2 cut(s) | 444, 489 |
| HaeIII | GGCC | 1 cut(s) | 350 |
| Hin1II | CATG | 3 cut(s) | 160, 335, 349 |
| HinfI | GANTC | 1 cut(s) | 116 |
| HphI | GGTGA | 2 cut(s) | 298, 392 |
| Hpy166II | GTNNAC | 1 cut(s) | 383 |
| Hpy8I | GTNNAC | 1 cut(s) | 383 |
| HpyCH4III | ACNGT | 1 cut(s) | 457 |
| HpyCH4IV | ACGT | 1 cut(s) | 474 |
| HpyCH4V | TGCA | 4 cut(s) | 44, 133, 184, 362 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 184, 397 |
| HpyF3I | CTNAG | 1 cut(s) | 144 |
| HpySE526I | ACGT | 1 cut(s) | 474 |
| Hsp92II | CATG | 3 cut(s) | 160, 335, 349 |
| Lsp1109I | GCAGC | 2 cut(s) | 28, 196 |
| MaeII | ACGT | 1 cut(s) | 474 |
| MaeIII | GTNAC | 2 cut(s) | 3, 147 |
| MboII | GAAGA | 4 cut(s) | 55, 87, 179, 417 |
| MhlI | GDGCHC | 1 cut(s) | 293 |
| MlsI | TGGCCA | 1 cut(s) | 350 |
| MluCI | AATT | 3 cut(s) | 240, 448, 493 |
| MluNI | TGGCCA | 1 cut(s) | 350 |
| MnlI | CCTC | 5 cut(s) | 307, 358, 362, 401, 411 |
| Mox20I | TGGCCA | 1 cut(s) | 350 |
| MscI | TGGCCA | 1 cut(s) | 350 |
| MseI | TTAA | 2 cut(s) | 227, 511 |
| Msp20I | TGGCCA | 1 cut(s) | 350 |
| MspR9I | CCNGG | 2 cut(s) | 256, 352 |
| MvaI | CCWGG | 2 cut(s) | 256, 352 |
| MvnI | CGCG | 1 cut(s) | 250 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 184, 397 |
| NlaIII | CATG | 3 cut(s) | 160, 335, 349 |
| NlaIV | GGNNCC | 1 cut(s) | 399 |
| PfeI | GAWTC | 1 cut(s) | 116 |
| PkrI | GCNGC | 2 cut(s) | 43, 186 |
| Ppu21I | YACGTR | 1 cut(s) | 475 |
| Psp124BI | GAGCTC | 1 cut(s) | 293 |
| Psp6I | CCWGG | 2 cut(s) | 254, 350 |
| PspFI | CCCAGC | 2 cut(s) | 440, 485 |
| PspGI | CCWGG | 2 cut(s) | 254, 350 |
| PspN4I | GGNNCC | 1 cut(s) | 399 |
| PstI | CTGCAG | 1 cut(s) | 46 |
| RsaI | GTAC | 2 cut(s) | 356, 454 |
| RsaNI | GTAC | 2 cut(s) | 355, 453 |
| SacI | GAGCTC | 1 cut(s) | 293 |
| SaqAI | TTAA | 2 cut(s) | 227, 511 |
| SatI | GCNGC | 2 cut(s) | 42, 185 |
| ScrFI | CCNGG | 2 cut(s) | 256, 352 |
| SduI | GDGCHC | 1 cut(s) | 293 |
| SetI | ASST | 7 cut(s) | 203, 293, 307, 356, 442, 477, 487 |
| SfcI | CTRYAG | 2 cut(s) | 42, 464 |
| SmlI | CTYRAG | 1 cut(s) | 292 |
| SmoI | CTYRAG | 1 cut(s) | 292 |
| SnaBI | TACGTA | 1 cut(s) | 475 |
| Sse9I | AATT | 3 cut(s) | 240, 448, 493 |
| SsiI | CCGC | 2 cut(s) | 178, 248 |
| SstI | GAGCTC | 1 cut(s) | 293 |
| StyD4I | CCNGG | 2 cut(s) | 254, 350 |
| StyI | CCWWGG | 1 cut(s) | 217 |
| TaaI | ACNGT | 1 cut(s) | 457 |
| TaiI | ACGT | 1 cut(s) | 477 |
| TaqI | TCGA | 1 cut(s) | 403 |
| TasI | AATT | 3 cut(s) | 240, 448, 493 |
| TatI | WGTACW | 1 cut(s) | 452 |
| TfiI | GAWTC | 1 cut(s) | 116 |
| Tru1I | TTAA | 2 cut(s) | 227, 511 |
| Tru9I | TTAA | 2 cut(s) | 227, 511 |
| TscAI | CASTG | 1 cut(s) | 288 |
| TseI | GCWGC | 2 cut(s) | 41, 184 |
| TspRI | CASTG | 1 cut(s) | 288 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 405 |
| XapI | RAATTY | 1 cut(s) | 240 |