Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0012673

Physical Location & Seq

Genomic Coordinates Forward (+)

8837238 .. 8838847

Gene Structure 1610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G009430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGATAGTGCAAGATGTTGCTGAGTTACTTGGCATGATGGTTGAAGACCACAAGCGGTTGCAGCCTAATGTGAAAACCTATGCGATTTTGAGCAGAAAGTATCAAACACTGGTGAGCTCAAGGGTTGAACCTTTGCAAGAGGAAGCTGAACTTGGACATGAGATTGATTACATGGCCAGGTACATTGCAGAGGGAGGGCTTACTGGTGAACGCAAGCGATGGGTGCCTCGAAGAGGGAAAACTCCACAGAAATACGTAGATGTAGCTGGGTCAAATTGTTATTTTTTTTTTAATATATCCCCAAGTTTTGCCACTGATGTTGGTGGCATTGAGAACACACTGATACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

116

Amino Acids

13.21

Weight (kDa)

6.11

Isoelectric Point (pI)

68.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012673)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330901 RchiOBHm_Chr2g0171521
rosa_multiflora	Rmu_sc0000133.1_g000010 Rmu_sc0001356.1_g000013 Rmu_sc0004924.1_g000011
rosa_roxburghii	Rroxscaffold_4G00310330 Rroxscaffold_5G00342300
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh1BG054600 Rh1CG048000 Rh1CG199700 Rh2CG281400 Rh6BG289700 Rh6DG077300 Rh6DG266000 Rh7AG375700 Rh7AG405000
rosa_wichuraiana	Rw7G009430 Rw7G021360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AciI	CCGC	1 cut(s)	55
AcoI	YGGCCR	1 cut(s)	174
AfaI	GTAC	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	44, 128
AjnI	CCWGG	1 cut(s)	176
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
AluBI	AGCT	3 cut(s)	117, 146, 266
AluI	AGCT	3 cut(s)	117, 146, 266
Alw21I	GWGCWC	1 cut(s)	119
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	61
AsuHPI	GGTGA	2 cut(s)	124, 218
BalI	TGGCCA	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	2 cut(s)	31, 213
BciT130I	CCWGG	1 cut(s)	178
BisI	GCNGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	63
Bme1390I	CCNGG	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	51
BpuEI	CTTGAG	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	2 cut(s)	114, 208
Bse3DI	GCAATG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	178
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	114, 208
BseXI	GCAGC	1 cut(s)	73
BseYI	CCCAGC	1 cut(s)	266
BshFI	GGCC	1 cut(s)	176
BshNI	GGYRCC	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	233
BsnI	GGCC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	119
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	2 cut(s)	114, 208
Bst2UI	CCWGG	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	226
BstBAI	YACGTR	1 cut(s)	256
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	21
BstENI	CCTNNNNNAGG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 223
BstNI	CCWGG	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	176
BstSNI	TACGTA	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	176
BtgZI	GCGATG	1 cut(s)	232
BtsIMutI	CAGTG	3 cut(s)	107, 312, 338
Cac8I	GCNNGC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	181
CspCI	CAANNNNNGTGG	2 cut(s)	301, 336
CviAII	CATG	3 cut(s)	34, 158, 172
CviJI	RGCY	6 cut(s)	64, 117, 146, 176, 199, 266
CviKI_1	RGCY	6 cut(s)	64, 117, 146, 176, 199, 266
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Ecl136II	GAGCTC	1 cut(s)	117
Eco105I	TACGTA	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	117
EcoICRI	GAGCTC	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	119
FaeI	CATG	3 cut(s)	37, 161, 175
FaiI	YATR	5 cut(s)	35, 81, 159, 173, 296
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FatI	CATG	3 cut(s)	33, 157, 171
Fnu4HI	GCNGC	1 cut(s)	62
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	62
GluI	GCNGC	1 cut(s)	62
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	176
Hin1II	CATG	3 cut(s)	37, 161, 175
HphI	GGTGA	2 cut(s)	124, 218
Hpy166II	GTNNAC	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	4 cut(s)	10, 61, 136, 188
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 223
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	1 cut(s)	255
Hsp92II	CATG	3 cut(s)	37, 161, 175
LpnPI	CCDG	5 cut(s)	95, 163, 189, 190, 252
Lsp1109I	GCAGC	1 cut(s)	73
MaeII	ACGT	1 cut(s)	255
MaeIII	GTNAC	1 cut(s)	24
MboII	GAAGA	2 cut(s)	56, 243
MhlI	GDGCHC	1 cut(s)	119
MlsI	TGGCCA	1 cut(s)	176
MluCI	AATT	1 cut(s)	274
MluNI	TGGCCA	1 cut(s)	176
MnlI	CCTC	5 cut(s)	133, 184, 188, 227, 237
Mox20I	TGGCCA	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	176
MseI	TTAA	1 cut(s)	291
Msp20I	TGGCCA	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	178
MwoI	GCNNNNNNNGC	2 cut(s)	61, 223
NlaIII	CATG	3 cut(s)	37, 161, 175
NlaIV	GGNNCC	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	63
Ppu21I	YACGTR	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	225
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SacI	GAGCTC	1 cut(s)	119
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	7 cut(s)	80, 119, 133, 148, 182, 258, 268
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
SnaBI	TACGTA	1 cut(s)	256
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	1 cut(s)	55
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	176
TaiI	ACGT	1 cut(s)	258
TaqI	TCGA	1 cut(s)	229
TasI	AATT	1 cut(s)	274
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	3 cut(s)	114, 319, 345
TseI	GCWGC	1 cut(s)	61
TspRI	CASTG	3 cut(s)	114, 319, 345
XagI	CCTNNNNNAGG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.