Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0012673

Physical Location & Seq

Genomic Coordinates Forward (+)

24772602 .. 24773386

Gene Structure 785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G021360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGATGGTTGAAGACCACAAGCGGTTGCAGCCTAATGTGAAAACCTATGCTACATCAGTCCTTGGAGTTTTAAGACAGACCCAAATTCCACCGCAAGCCAGGATTTTGAGCAGAAAGTATCAAACACTGGTGAGCTCAAGGGTTGAACCTTTACAAGAGGAAGCCGAACTTGGACATGAGATTGATTACATGGCCAGGTACATTGCAGAGGGAGGGCTTACTGGTGAACGCAAGCGATGGGTGCCTCGAAGAGGGAAAACTTCACAGAAATATGTAGTTGTAGCTAGGTCAAATTGTACAGTATATCTACAGAAATACGTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

108

Amino Acids

12.49

Weight (kDa)

9.88

Isoelectric Point (pI)

75.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012673)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330901 RchiOBHm_Chr2g0171521
rosa_multiflora	Rmu_sc0000133.1_g000010 Rmu_sc0001356.1_g000013 Rmu_sc0004924.1_g000011
rosa_roxburghii	Rroxscaffold_4G00310330 Rroxscaffold_5G00342300
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh1BG054600 Rh1CG048000 Rh1CG199700 Rh2CG281400 Rh6BG289700 Rh6DG077300 Rh6DG266000 Rh7AG375700 Rh7AG405000
rosa_wichuraiana	Rw7G009430 Rw7G021360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AciI	CCGC	2 cut(s)	22, 92
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	84
AfaI	GTAC	2 cut(s)	200, 298
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	11, 146
AjnI	CCWGG	2 cut(s)	98, 194
AjuI	GAANNNNNNNTTGG	2 cut(s)	153, 185
AluBI	AGCT	2 cut(s)	135, 284
AluI	AGCT	2 cut(s)	135, 284
Alw21I	GWGCWC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	84
AsuHPI	GGTGA	2 cut(s)	142, 236
BalI	TGGCCA	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	1 cut(s)	231
BciT130I	CCWGG	2 cut(s)	100, 196
BfaI	CTAG	1 cut(s)	285
BfmI	CTRYAG	1 cut(s)	308
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	2 cut(s)	100, 196
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	2 cut(s)	100, 196
BpiI	GAAGAC	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	121
BsaAI	YACGTR	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	132, 226
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	2 cut(s)	100, 196
BseDI	CCNNGG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	201
BseNI	ACTGG	2 cut(s)	132, 226
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	251
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	137
Bsp1407I	TGTACA	1 cut(s)	296
BspACI	CCGC	2 cut(s)	22, 92
BspANI	GGCC	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	243
BspT107I	GGYRCC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	201
BsrGI	TGTACA	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	132, 226
BssECI	CCNNGG	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	61
Bst2UI	CCWGG	2 cut(s)	100, 196
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	1 cut(s)	244
BstAUI	TGTACA	1 cut(s)	296
BstBAI	YACGTR	1 cut(s)	319
BstC8I	GCNNGC	2 cut(s)	96, 233
BstENI	CCTNNNNNAGG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 241
BstNI	CCWGG	2 cut(s)	100, 196
BstSCI	CCNGG	2 cut(s)	98, 194
BstSFI	CTRYAG	1 cut(s)	308
BstSNI	TACGTA	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	194
BtgZI	GCGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	125
Cac8I	GCNNGC	2 cut(s)	96, 233
Csp6I	GTAC	2 cut(s)	199, 297
CviAII	CATG	2 cut(s)	176, 190
CviJI	RGCY	7 cut(s)	31, 98, 135, 164, 194, 217, 284
CviKI_1	RGCY	7 cut(s)	31, 98, 135, 164, 194, 217, 284
CviQI	GTAC	2 cut(s)	199, 297
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
Ecl136II	GAGCTC	1 cut(s)	135
Eco105I	TACGTA	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	137
Eco53kI	GAGCTC	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	135
EcoNI	CCTNNNNNAGG	1 cut(s)	249
EcoRII	CCWGG	2 cut(s)	98, 194
EcoT14I	CCWWGG	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	2 cut(s)	179, 193
FaiI	YATR	5 cut(s)	48, 177, 191, 273, 304
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	2 cut(s)	175, 189
Fnu4HI	GCNGC	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	194
Hin1II	CATG	2 cut(s)	179, 193
HphI	GGTGA	2 cut(s)	142, 236
Hpy166II	GTNNAC	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	227
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	2 cut(s)	28, 206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 241
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	179, 193
LpnPI	CCDG	6 cut(s)	85, 112, 113, 181, 207, 208
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	318
MboII	GAAGA	2 cut(s)	23, 261
MhlI	GDGCHC	1 cut(s)	137
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	2 cut(s)	84, 292
MluNI	TGGCCA	1 cut(s)	194
MnlI	CCTC	5 cut(s)	151, 202, 206, 245, 255
Mox20I	TGGCCA	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	1 cut(s)	71
Msp20I	TGGCCA	1 cut(s)	194
MspR9I	CCNGG	2 cut(s)	100, 196
MvaI	CCWGG	2 cut(s)	100, 196
MwoI	GCNNNNNNNGC	2 cut(s)	28, 241
NlaIII	CATG	2 cut(s)	179, 193
NlaIV	GGNNCC	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	30
Ppu21I	YACGTR	1 cut(s)	319
Psp124BI	GAGCTC	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	98, 194
PspGI	CCWGG	2 cut(s)	98, 194
PspN4I	GGNNCC	1 cut(s)	243
RsaI	GTAC	2 cut(s)	200, 298
RsaNI	GTAC	2 cut(s)	199, 297
SacI	GAGCTC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	100, 196
SduI	GDGCHC	1 cut(s)	137
SetI	ASST	7 cut(s)	47, 137, 151, 200, 286, 290, 321
SfcI	CTRYAG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	136
SmoI	CTYRAG	1 cut(s)	136
SnaBI	TACGTA	1 cut(s)	319
Sse9I	AATT	2 cut(s)	84, 292
SsiI	CCGC	2 cut(s)	22, 92
SspMI	CTAG	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	137
StyD4I	CCNGG	2 cut(s)	98, 194
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	247
TasI	AATT	2 cut(s)	84, 292
TatI	WGTACW	1 cut(s)	296
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	1 cut(s)	132
TseI	GCWGC	1 cut(s)	28
TspRI	CASTG	1 cut(s)	132
XagI	CCTNNNNNAGG	1 cut(s)	249
XapI	RAATTY	1 cut(s)	84
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.