Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0012673

Physical Location & Seq

Genomic Coordinates Forward (+)

8780838 .. 8782583

Gene Structure 1746 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG077300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAGTATGGAGAAGCATATTCCAGAGCTGAATCTTATGATAGAGTGCAAGATGTTGCTGAGTTACTTGGCATGATGGTTGAAGACCACAAGCGGTTGCAGCCTAATGTGAAAACCTATGCGATTTTGAGCAGAAAGTATCAAACACTGGTGAGCTCAAGGGTTGAACCTTTGCAAGAGGAAGCTGAACTTGGACATGAGATTGATTACATGGCCAGGTACATTGCAGAGGGAGGGCTTACTGGTGAACGCAAGCGATGGGTGCCTCGAAGAGGGAAAACTCCACAGAAATACGTAGATCCTCAAATCCAAGTACATTGCAGAGGGAGGGCTTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

113

Amino Acids

13.28

Weight (kDa)

7.85

Isoelectric Point (pI)

61.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012673)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330901 RchiOBHm_Chr2g0171521
rosa_multiflora	Rmu_sc0000133.1_g000010 Rmu_sc0001356.1_g000013 Rmu_sc0004924.1_g000011
rosa_roxburghii	Rroxscaffold_4G00310330 Rroxscaffold_5G00342300
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh1BG054600 Rh1CG048000 Rh1CG199700 Rh2CG281400 Rh6BG289700 Rh6DG077300 Rh6DG266000 Rh7AG375700 Rh7AG405000
rosa_wichuraiana	Rw7G009430 Rw7G021360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	262
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	1 cut(s)	293
AcoI	YGGCCR	1 cut(s)	213
AfaI	GTAC	2 cut(s)	221, 315
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	83, 167
AjnI	CCWGG	1 cut(s)	215
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	3 cut(s)	29, 156, 185
AluI	AGCT	3 cut(s)	29, 156, 185
Alw21I	GWGCWC	1 cut(s)	158
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	100
AsuHPI	GGTGA	2 cut(s)	163, 257
BalI	TGGCCA	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	112
BccI	CCATC	2 cut(s)	70, 252
BciT130I	CCWGG	1 cut(s)	217
BisI	GCNGC	1 cut(s)	101
BlsI	GCNGC	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	142
BsaAI	YACGTR	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	3 cut(s)	153, 247, 341
Bse3DI	GCAATG	2 cut(s)	222, 316
BseBI	CCWGG	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMI	GCAATG	2 cut(s)	222, 316
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	3 cut(s)	153, 247, 341
BseXI	GCAGC	1 cut(s)	112
BshFI	GGCC	1 cut(s)	215
BshNI	GGYRCC	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	272
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	293
BspT107I	GGYRCC	1 cut(s)	262
BsrDI	GCAATG	2 cut(s)	222, 316
BsrI	ACTGG	3 cut(s)	153, 247, 341
BssMI	GATC	1 cut(s)	298
Bst2UI	CCWGG	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	265
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstKTI	GATC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	298
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 262
BstNI	CCWGG	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	215
BstSNI	TACGTA	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	112
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	215
BtgZI	GCGATG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	146
Cac8I	GCNNGC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	220, 314
CviAII	CATG	3 cut(s)	73, 197, 211
CviJI	RGCY	7 cut(s)	29, 103, 156, 185, 215, 238, 332
CviKI_1	RGCY	7 cut(s)	29, 103, 156, 185, 215, 238, 332
CviQI	GTAC	2 cut(s)	220, 314
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	265
Ecl136II	GAGCTC	1 cut(s)	156
Eco105I	TACGTA	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	156
EcoICRI	GAGCTC	1 cut(s)	156
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	215
EcoT38I	GRGCYC	1 cut(s)	158
FaeI	CATG	3 cut(s)	76, 200, 214
FaiI	YATR	7 cut(s)	9, 19, 39, 74, 120, 198, 212
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FatI	CATG	3 cut(s)	72, 196, 210
Fnu4HI	GCNGC	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	101
GluI	GCNGC	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	215
Hin1II	CATG	3 cut(s)	76, 200, 214
HinfI	GANTC	1 cut(s)	32
HphI	GGTGA	2 cut(s)	163, 257
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188III	TCNNGA	1 cut(s)	24
Hpy8I	GTNNAC	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	5 cut(s)	49, 100, 175, 227, 321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 262
HpyF3I	CTNAG	1 cut(s)	60
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	76, 200, 214
Kzo9I	GATC	1 cut(s)	298
LpnPI	CCDG	6 cut(s)	37, 134, 202, 228, 229, 322
Lsp1109I	GCAGC	1 cut(s)	112
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	2 cut(s)	95, 282
MflI	RGATCY	1 cut(s)	298
MhlI	GDGCHC	1 cut(s)	158
MlsI	TGGCCA	1 cut(s)	215
MluNI	TGGCCA	1 cut(s)	215
MnlI	CCTC	8 cut(s)	172, 223, 227, 266, 276, 312, 317, 321
Mox20I	TGGCCA	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	215
Msp20I	TGGCCA	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	217
MwoI	GCNNNNNNNGC	2 cut(s)	100, 262
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	3 cut(s)	76, 200, 214
NlaIV	GGNNCC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	102
Ppu21I	YACGTR	1 cut(s)	295
Psp124BI	GAGCTC	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	298
RsaI	GTAC	2 cut(s)	221, 315
RsaNI	GTAC	2 cut(s)	220, 314
SacI	GAGCTC	1 cut(s)	158
SatI	GCNGC	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	7 cut(s)	31, 119, 158, 172, 187, 221, 297
SmlI	CTYRAG	1 cut(s)	157
SmoI	CTYRAG	1 cut(s)	157
SnaBI	TACGTA	1 cut(s)	295
SsiI	CCGC	1 cut(s)	94
SstI	GAGCTC	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	215
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	1 cut(s)	268
TatI	WGTACW	1 cut(s)	313
TfiI	GAWTC	1 cut(s)	32
TscAI	CASTG	1 cut(s)	153
TseI	GCWGC	1 cut(s)	100
TspRI	CASTG	1 cut(s)	153
XagI	CCTNNNNNAGG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.