Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0012673

Physical Location & Seq

Genomic Coordinates Forward (+)

51489145 .. 51493322

Gene Structure 4178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG289700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCTCTTCCCCTTCGATTTCCCTATTCTTGGTTTGAAGAGATTTTTTTCGAATCGGACCGGTGGTTTGTTGAGATCAAGGAGGCTTTGGTGGTCTGTTAGTGGTGGAGTGGCGTATCTGGATTTGTTGTATCATTCTTCGACGCCGACTGTTGTTTGGATATACTCGGTGGTGCATGTAGATGTTAGTAAAGCTATAAAGAGGAGGTTTGGAATCCAAAGAAGAAGGATTTTTAGCAAAGAAAAGCTGCCCAGAAATATTAACTGGCTTCGCAACATCAAAGAAGATCCTGCCAATAATATCAAGAAGATACTGGTGGGGAACAAGGCTGATAAGGACGAGAGCGAAAGGGCTGTGAGCATTGCTGGAGGTCAAGCTCTTTCTAAAGAGTACGACATTGAGTTCTTTGAAACCAGTGCCGAGACGAACATGAATGTAGAAGAGGTCTTCTTTTCAATAGCTAGGGATATCATGCTGGAATCAAATGCTTCCAGGGTCACTCATGAGCCTCAGACATTTGACATTAACCAGCTAAACAAAGGATTTGCACATGATAGATTGGGGAATAAGTTACAGAGAAGCCAGACTTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000166 GO:0001882 GO:0001883 GO:0002790 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006887 GO:0006904 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0009306 GO:0009719 GO:0009723 GO:0009725 GO:0009755 GO:0009873 GO:0009987 GO:0010033 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0017076 GO:0017157 GO:0019001 GO:0022406 GO:0023052 GO:0031090 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032870 GO:0032879 GO:0032940 GO:0033036 GO:0035556 GO:0035639 GO:0036094 GO:0042221 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0050789 GO:0050794 GO:0050896 GO:0051046 GO:0051049 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051716 GO:0060627 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071702 GO:0071705 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:0140029 GO:0140056 GO:1901265 GO:1901363 GO:1903530

KEGG Pathways

Metabolic & Signaling

ko04144 ko04152 ko04530 ko04972 map04144 map04152 map04530 map04972

Pfam Domains

Protein Families

Ras

Protein Analysis

198

Amino Acids

22.83

Weight (kDa)

9.83

Isoelectric Point (pI)

61.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	86 - 158	3e-16	Ras family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012673)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330901 RchiOBHm_Chr2g0171521
rosa_multiflora	Rmu_sc0000133.1_g000010 Rmu_sc0001356.1_g000013 Rmu_sc0004924.1_g000011
rosa_roxburghii	Rroxscaffold_4G00310330 Rroxscaffold_5G00342300
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh1BG054600 Rh1CG048000 Rh1CG199700 Rh2CG281400 Rh6BG289700 Rh6DG077300 Rh6DG266000 Rh7AG375700 Rh7AG405000
rosa_wichuraiana	Rw7G009430 Rw7G021360

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	1 cut(s)	392
AfiI	CCNNNNNNNGG	1 cut(s)	29
AgeI	ACCGGT	1 cut(s)	59
AgsI	TTSAA	3 cut(s)	37, 410, 456
AjnI	CCWGG	1 cut(s)	491
AluBI	AGCT	5 cut(s)	194, 247, 377, 461, 532
AluI	AGCT	5 cut(s)	194, 247, 377, 461, 532
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	247
ArsI	GACNNNNNNTTYG	2 cut(s)	49, 81
AsiGI	ACCGGT	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	57
AsuII	TTCGAA	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	439
BbvI	GCAGC	1 cut(s)	234
BciT130I	CCWGG	1 cut(s)	493
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	1 cut(s)	462
BisI	GCNGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	249
Bme1390I	CCNGG	1 cut(s)	493
Bme18I	GGWCC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	493
BpiI	GAAGAC	1 cut(s)	439
BpmI	CTGGAG	1 cut(s)	387
Bpu14I	TTCGAA	1 cut(s)	50
BsaHI	GRCGYC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	492
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	29
Bse118I	RCCGGY	1 cut(s)	59
Bse1I	ACTGG	3 cut(s)	269, 318, 414
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	493
BseDI	CCNNGG	1 cut(s)	492
BseLI	CCNNNNNNNGG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	3 cut(s)	269, 318, 414
BseRI	GAGGAG	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	234
BshTI	ACCGGT	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	29
BsmAI	GTCTC	1 cut(s)	416
BsmBI	CGTCTC	1 cut(s)	416
Bsp119I	TTCGAA	1 cut(s)	50
Bsp143I	GATC	2 cut(s)	74, 286
BspCNI	CTCAG	1 cut(s)	523
BspHI	TCATGA	1 cut(s)	502
BspPI	GGATC	1 cut(s)	281
BspQI	GCTCTTC	1 cut(s)	11
BspT104I	TTCGAA	1 cut(s)	50
BsrDI	GCAATG	1 cut(s)	360
BsrFI	RCCGGY	1 cut(s)	59
BsrI	ACTGG	3 cut(s)	269, 318, 414
BssAI	RCCGGY	1 cut(s)	59
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	2 cut(s)	74, 286
BssNI	GRCGYC	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	493
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	3 cut(s)	11, 32, 435
BstACI	GRCGYC	1 cut(s)	143
BstBI	TTCGAA	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	510
BstKTI	GATC	2 cut(s)	77, 289
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	2 cut(s)	74, 286
BstNI	CCWGG	1 cut(s)	493
BstNSI	RCATGY	1 cut(s)	179
BstSCI	CCNGG	1 cut(s)	491
BstV1I	GCAGC	1 cut(s)	234
BstV2I	GAAGAC	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	421
CciI	TCATGA	1 cut(s)	502
Cfr10I	RCCGGY	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	57
CpoI	CGGWCCG	1 cut(s)	57
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	391
CspAI	ACCGGT	1 cut(s)	59
CspI	CGGWCCG	1 cut(s)	57
CviAII	CATG	5 cut(s)	176, 430, 472, 503, 551
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	2 cut(s)	76, 288
DpnII	GATC	2 cut(s)	74, 286
Eam1104I	CTCTTC	3 cut(s)	11, 32, 435
EarI	CTCTTC	3 cut(s)	11, 32, 435
Eco32I	GATATC	1 cut(s)	469
Eco47I	GGWCC	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	491
EcoRV	GATATC	1 cut(s)	469
Esp3I	CGTCTC	1 cut(s)	416
FaeI	CATG	5 cut(s)	179, 433, 475, 506, 554
FaiI	YATR	7 cut(s)	163, 177, 197, 431, 473, 504, 552
FalI	AAGNNNNNCTT	1 cut(s)	571
FatI	CATG	5 cut(s)	175, 429, 471, 502, 550
Fnu4HI	GCNGC	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	248
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	387
HapII	CCGG	1 cut(s)	60
HgaI	GACGC	1 cut(s)	151
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	5 cut(s)	179, 433, 475, 506, 554
HinfI	GANTC	3 cut(s)	52, 213, 479
HpaII	CCGG	1 cut(s)	60
Hpy188I	TCNGA	2 cut(s)	57, 513
Hpy188III	TCNNGA	3 cut(s)	119, 304, 503
Hpy99I	CGWCG	1 cut(s)	145
HpyAV	CCTTC	2 cut(s)	22, 219
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	2 cut(s)	175, 548
HpyF3I	CTNAG	1 cut(s)	510
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	5 cut(s)	179, 433, 475, 506, 554
Kzo9I	GATC	2 cut(s)	74, 286
LguI	GCTCTTC	1 cut(s)	11
Lsp1109I	GCAGC	1 cut(s)	234
MaeI	CTAG	1 cut(s)	462
MaeIII	GTNAC	2 cut(s)	496, 570
MalI	GATC	2 cut(s)	76, 288
MboI	GATC	2 cut(s)	74, 286
MboII	GAAGA	7 cut(s)	49, 129, 234, 296, 319, 439, 452
MflI	RGATCY	1 cut(s)	286
MnlI	CCTC	6 cut(s)	75, 195, 198, 362, 436, 519
MseI	TTAA	3 cut(s)	261, 525, 595
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	493
NdeII	GATC	2 cut(s)	74, 286
NlaIII	CATG	5 cut(s)	179, 433, 475, 506, 554
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	496
NspI	RCATGY	1 cut(s)	179
NspV	TTCGAA	1 cut(s)	50
PagI	TCATGA	1 cut(s)	502
PciSI	GCTCTTC	1 cut(s)	11
PfeI	GAWTC	3 cut(s)	52, 213, 479
PinAI	ACCGGT	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	491
PspGI	CCWGG	1 cut(s)	491
PspPI	GGNCC	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	1 cut(s)	180
Rsr2I	CGGWCCG	1 cut(s)	57
RsrII	CGGWCCG	1 cut(s)	57
SapI	GCTCTTC	1 cut(s)	11
SaqAI	TTAA	3 cut(s)	261, 525, 595
SatI	GCNGC	1 cut(s)	248
Sau3AI	GATC	2 cut(s)	74, 286
Sau96I	GGNCC	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	493
SetI	ASST	8 cut(s)	196, 209, 249, 373, 379, 447, 463, 534
SfuI	TTCGAA	1 cut(s)	50
SinI	GGWCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	180
SspI	AATATT	1 cut(s)	259
SspMI	CTAG	1 cut(s)	462
StyD4I	CCNGG	1 cut(s)	491
TaaI	ACNGT	1 cut(s)	151
TaqI	TCGA	3 cut(s)	15, 50, 140
TfiI	GAWTC	3 cut(s)	52, 213, 479
Tru1I	TTAA	3 cut(s)	261, 525, 595
Tru9I	TTAA	3 cut(s)	261, 525, 595
TscAI	CASTG	1 cut(s)	421
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	1 cut(s)	446
TspRI	CASTG	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	57
XceI	RCATGY	1 cut(s)	179
XspI	CTAG	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.