Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004924.1

Orthogroup ID

OG0012673

Physical Location & Seq

Genomic Coordinates Forward (+)

28956 .. 29728

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004924.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgatatgtagagtgcaagatgttgctgagttacttggcatgatggttgaagaccacaagcggttgcagcctaatgtgaaaacctatgctacatcagtccttggagttttaagacagacccaaattccaccgcaagccaggattttgagcagaaagtatcaaacactggtgagctcaagggttgaacctttacaagaggaagccgaacttggacatgagattgattacatggccaggtatattgcagagggaggacttactggtgaacgcaagcgatggtgcctcgaagagggaaaacttcacagaaatatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

104

Amino Acids

12.01

Weight (kDa)

7.81

Isoelectric Point (pI)

68.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012673)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330901 RchiOBHm_Chr2g0171521
rosa_multiflora	Rmu_sc0000133.1_g000010 Rmu_sc0001356.1_g000013 Rmu_sc0004924.1_g000011
rosa_roxburghii	Rroxscaffold_4G00310330 Rroxscaffold_5G00342300
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh1BG054600 Rh1CG048000 Rh1CG199700 Rh2CG281400 Rh6BG289700 Rh6DG077300 Rh6DG266000 Rh7AG375700 Rh7AG405000
rosa_wichuraiana	Rw7G009430 Rw7G021360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	279
AciI	CCGC	2 cut(s)	61, 131
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	2 cut(s)	50, 185
AjnI	CCWGG	2 cut(s)	137, 233
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
AluBI	AGCT	1 cut(s)	174
AluI	AGCT	1 cut(s)	174
Alw21I	GWGCWC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	1 cut(s)	123
AsuHPI	GGTGA	2 cut(s)	181, 275
BalI	TGGCCA	1 cut(s)	233
BanI	GGYRCC	1 cut(s)	279
BanII	GRGCYC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	2 cut(s)	37, 270
BciT130I	CCWGG	2 cut(s)	139, 235
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	2 cut(s)	139, 235
BmiI	GGNNCC	1 cut(s)	281
BmrFI	CCNGG	2 cut(s)	139, 235
BpiI	GAAGAC	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse1I	ACTGG	2 cut(s)	171, 265
BseBI	CCWGG	2 cut(s)	139, 235
BseDI	CCNNGG	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	2 cut(s)	171, 265
BseXI	GCAGC	1 cut(s)	79
BshFI	GGCC	1 cut(s)	233
BshNI	GGYRCC	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	289
BsnI	GGCC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	176
BspACI	CCGC	2 cut(s)	61, 131
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	279
BsrI	ACTGG	2 cut(s)	171, 265
BssECI	CCNNGG	1 cut(s)	100
BssT1I	CCWWGG	1 cut(s)	100
Bst2UI	CCWGG	2 cut(s)	139, 235
Bst6I	CTCTTC	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	135, 272
BstDEI	CTNAG	1 cut(s)	27
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstNI	CCWGG	2 cut(s)	139, 235
BstSCI	CCNGG	2 cut(s)	137, 233
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	233
BtgZI	GCGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	164
Cac8I	GCNNGC	2 cut(s)	135, 272
CviAII	CATG	3 cut(s)	40, 215, 229
CviJI	RGCY	5 cut(s)	70, 137, 174, 203, 233
CviKI_1	RGCY	5 cut(s)	70, 137, 174, 203, 233
DdeI	CTNAG	1 cut(s)	27
EaeI	YGGCCR	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	176
Eco53kI	GAGCTC	1 cut(s)	174
EcoICRI	GAGCTC	1 cut(s)	174
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoRII	CCWGG	2 cut(s)	137, 233
EcoT14I	CCWWGG	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	3 cut(s)	43, 218, 232
FaiI	YATR	7 cut(s)	7, 41, 87, 216, 230, 240, 311
FalI	AAGNNNNNCTT	2 cut(s)	192, 224
FatI	CATG	3 cut(s)	39, 214, 228
Fnu4HI	GCNGC	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	233
Hin1II	CATG	3 cut(s)	43, 218, 232
HphI	GGTGA	2 cut(s)	181, 275
Hpy166II	GTNNAC	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	266
HpyCH4V	TGCA	3 cut(s)	16, 67, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	43, 218, 232
LpnPI	CCDG	6 cut(s)	124, 151, 152, 220, 246, 247
Lsp1109I	GCAGC	1 cut(s)	79
MaeIII	GTNAC	1 cut(s)	30
MboII	GAAGA	2 cut(s)	62, 299
MhlI	GDGCHC	1 cut(s)	176
MlsI	TGGCCA	1 cut(s)	233
MluCI	AATT	1 cut(s)	123
MluNI	TGGCCA	1 cut(s)	233
MnlI	CCTC	5 cut(s)	190, 241, 245, 283, 293
Mox20I	TGGCCA	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	233
MseI	TTAA	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	139, 235
MvaI	CCWGG	2 cut(s)	139, 235
MwoI	GCNNNNNNNGC	1 cut(s)	67
NlaIII	CATG	3 cut(s)	43, 218, 232
NlaIV	GGNNCC	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	69
Psp124BI	GAGCTC	1 cut(s)	176
Psp6I	CCWGG	2 cut(s)	137, 233
PspGI	CCWGG	2 cut(s)	137, 233
PspN4I	GGNNCC	1 cut(s)	281
SacI	GAGCTC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	139, 235
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	4 cut(s)	86, 176, 190, 239
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
Sse9I	AATT	1 cut(s)	123
SsiI	CCGC	2 cut(s)	61, 131
SstI	GAGCTC	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	137, 233
StyI	CCWWGG	1 cut(s)	100
TaqI	TCGA	1 cut(s)	285
TasI	AATT	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TscAI	CASTG	1 cut(s)	171
TseI	GCWGC	1 cut(s)	67
TspRI	CASTG	1 cut(s)	171
XagI	CCTNNNNNAGG	1 cut(s)	287
XapI	RAATTY	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.