Ankyrin repeats (many copies)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0330901 RchiOBHm_Chr2g0171521 |
| rosa_multiflora | Rmu_sc0000133.1_g000010 Rmu_sc0001356.1_g000013 Rmu_sc0004924.1_g000011 |
| rosa_roxburghii | Rroxscaffold_4G00310330 Rroxscaffold_5G00342300 |
| rosa_rugosa | Rorug03G0343800 |
| rosa_samantha | Rh1BG054600 Rh1CG048000 Rh1CG199700 Rh2CG281400 Rh6BG289700 Rh6DG077300 Rh6DG266000 Rh7AG375700 Rh7AG405000 |
| rosa_wichuraiana | Rw7G009430 Rw7G021360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 410 |
| AciI | CCGC | 1 cut(s) | 117 |
| AclWI | GGATC | 1 cut(s) | 431 |
| AcsI | RAATTY | 1 cut(s) | 536 |
| AcyI | GRCGYC | 1 cut(s) | 203 |
| AgsI | TTSAA | 4 cut(s) | 10, 486, 518, 535 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 266, 298 |
| AluBI | AGCT | 3 cut(s) | 321, 428, 434 |
| AluI | AGCT | 3 cut(s) | 321, 428, 434 |
| Alw26I | GTCTC | 1 cut(s) | 60 |
| AlwI | GGATC | 1 cut(s) | 431 |
| ApeKI | GCWGC | 2 cut(s) | 321, 383 |
| ApoI | RAATTY | 1 cut(s) | 536 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 103, 135 |
| AsuHPI | GGTGA | 1 cut(s) | 72 |
| BbvI | GCAGC | 2 cut(s) | 308, 370 |
| BceAI | ACGGC | 1 cut(s) | 529 |
| BcoDI | GTCTC | 1 cut(s) | 60 |
| BisI | GCNGC | 2 cut(s) | 322, 384 |
| BlsI | GCNGC | 2 cut(s) | 323, 385 |
| BmrI | ACTGGG | 1 cut(s) | 435 |
| BmuI | ACTGGG | 1 cut(s) | 435 |
| BpmI | CTGGAG | 1 cut(s) | 450 |
| BsaHI | GRCGYC | 1 cut(s) | 203 |
| Bse118I | RCCGGY | 1 cut(s) | 113 |
| Bse1I | ACTGG | 1 cut(s) | 441 |
| BseGI | GGATG | 1 cut(s) | 217 |
| BseNI | ACTGG | 1 cut(s) | 441 |
| BseRI | GAGGAG | 1 cut(s) | 54 |
| BseXI | GCAGC | 2 cut(s) | 308, 370 |
| BsiSI | CCGG | 1 cut(s) | 114 |
| BsmAI | GTCTC | 1 cut(s) | 60 |
| BsmBI | CGTCTC | 1 cut(s) | 60 |
| Bsp143I | GATC | 2 cut(s) | 128, 436 |
| BspACI | CCGC | 1 cut(s) | 117 |
| BspPI | GGATC | 1 cut(s) | 431 |
| BsrFI | RCCGGY | 1 cut(s) | 113 |
| BsrI | ACTGG | 1 cut(s) | 441 |
| BssAI | RCCGGY | 1 cut(s) | 113 |
| BssMI | GATC | 2 cut(s) | 128, 436 |
| BssNI | GRCGYC | 1 cut(s) | 203 |
| Bst4CI | ACNGT | 1 cut(s) | 467 |
| Bst6I | CTCTTC | 1 cut(s) | 72 |
| BstACI | GRCGYC | 1 cut(s) | 203 |
| BstC8I | GCNNGC | 1 cut(s) | 237 |
| BstF5I | GGATG | 1 cut(s) | 217 |
| BstKTI | GATC | 2 cut(s) | 131, 439 |
| BstMAI | GTCTC | 1 cut(s) | 60 |
| BstMBI | GATC | 2 cut(s) | 128, 436 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 362 |
| BstNSI | RCATGY | 1 cut(s) | 239 |
| BstV1I | GCAGC | 2 cut(s) | 308, 370 |
| BtgZI | GCGATG | 1 cut(s) | 364 |
| BtsCI | GGATG | 1 cut(s) | 217 |
| BtsIMutI | CAGTG | 1 cut(s) | 448 |
| Cac8I | GCNNGC | 1 cut(s) | 237 |
| Cfr10I | RCCGGY | 1 cut(s) | 113 |
| CseI | GACGC | 1 cut(s) | 211 |
| CviAII | CATG | 2 cut(s) | 33, 236 |
| CviJI | RGCY | 6 cut(s) | 43, 139, 321, 428, 434, 544 |
| CviKI_1 | RGCY | 6 cut(s) | 43, 139, 321, 428, 434, 544 |
| DpnI | GATC | 2 cut(s) | 130, 438 |
| DpnII | GATC | 2 cut(s) | 128, 436 |
| Eam1104I | CTCTTC | 1 cut(s) | 72 |
| EarI | CTCTTC | 1 cut(s) | 72 |
| Esp3I | CGTCTC | 1 cut(s) | 60 |
| FaeI | CATG | 2 cut(s) | 36, 239 |
| FaiI | YATR | 7 cut(s) | 34, 96, 223, 237, 334, 350, 410 |
| FatI | CATG | 2 cut(s) | 32, 235 |
| Fnu4HI | GCNGC | 2 cut(s) | 322, 384 |
| FokI | GGATG | 1 cut(s) | 224 |
| Fsp4HI | GCNGC | 2 cut(s) | 322, 384 |
| GluI | GCNGC | 2 cut(s) | 322, 384 |
| GsuI | CTGGAG | 1 cut(s) | 450 |
| HapII | CCGG | 1 cut(s) | 114 |
| HgaI | GACGC | 1 cut(s) | 211 |
| Hin1I | GRCGYC | 1 cut(s) | 203 |
| Hin1II | CATG | 2 cut(s) | 36, 239 |
| HinfI | GANTC | 3 cut(s) | 106, 265, 287 |
| HpaII | CCGG | 1 cut(s) | 114 |
| HphI | GGTGA | 1 cut(s) | 72 |
| Hpy188I | TCNGA | 2 cut(s) | 105, 201 |
| Hpy188III | TCNNGA | 1 cut(s) | 179 |
| Hpy99I | CGWCG | 2 cut(s) | 205, 211 |
| HpyAV | CCTTC | 2 cut(s) | 293, 515 |
| HpyCH4III | ACNGT | 1 cut(s) | 467 |
| HpyCH4IV | ACGT | 1 cut(s) | 26 |
| HpyCH4V | TGCA | 2 cut(s) | 235, 239 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 362 |
| HpySE526I | ACGT | 1 cut(s) | 26 |
| Hsp92I | GRCGYC | 1 cut(s) | 203 |
| Hsp92II | CATG | 2 cut(s) | 36, 239 |
| Kzo9I | GATC | 2 cut(s) | 128, 436 |
| LmnI | GCTCC | 2 cut(s) | 362, 431 |
| LpnPI | CCDG | 6 cut(s) | 127, 164, 339, 342, 414, 454 |
| Lsp1109I | GCAGC | 2 cut(s) | 308, 370 |
| MaeII | ACGT | 1 cut(s) | 26 |
| MaeIII | GTNAC | 1 cut(s) | 445 |
| MalI | GATC | 2 cut(s) | 130, 438 |
| MboI | GATC | 2 cut(s) | 128, 436 |
| MboII | GAAGA | 6 cut(s) | 49, 59, 62, 274, 308, 530 |
| MluCI | AATT | 2 cut(s) | 49, 536 |
| MmeI | TCCRAC | 2 cut(s) | 44, 224 |
| MnlI | CCTC | 6 cut(s) | 75, 94, 129, 252, 272, 448 |
| MseI | TTAA | 1 cut(s) | 422 |
| MslI | CAYNNNNRTG | 1 cut(s) | 240 |
| MspI | CCGG | 1 cut(s) | 114 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 362 |
| NdeII | GATC | 2 cut(s) | 128, 436 |
| NlaIII | CATG | 2 cut(s) | 36, 239 |
| NspI | RCATGY | 1 cut(s) | 239 |
| PaeI | GCATGC | 1 cut(s) | 239 |
| PfeI | GAWTC | 3 cut(s) | 106, 265, 287 |
| PkrI | GCNGC | 2 cut(s) | 323, 385 |
| PsiI | TTATAA | 1 cut(s) | 410 |
| RseI | CAYNNNNRTG | 1 cut(s) | 240 |
| SaqAI | TTAA | 1 cut(s) | 422 |
| SatI | GCNGC | 2 cut(s) | 322, 384 |
| Sau3AI | GATC | 2 cut(s) | 128, 436 |
| SetI | ASST | 6 cut(s) | 29, 283, 323, 430, 436, 459 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 240 |
| SphI | GCATGC | 1 cut(s) | 239 |
| Sse9I | AATT | 2 cut(s) | 49, 536 |
| SsiI | CCGC | 1 cut(s) | 117 |
| TaaI | ACNGT | 1 cut(s) | 467 |
| TaiI | ACGT | 1 cut(s) | 29 |
| TaqI | TCGA | 1 cut(s) | 109 |
| TasI | AATT | 2 cut(s) | 49, 536 |
| TfiI | GAWTC | 3 cut(s) | 106, 265, 287 |
| Tru1I | TTAA | 1 cut(s) | 422 |
| Tru9I | TTAA | 1 cut(s) | 422 |
| TscAI | CASTG | 1 cut(s) | 448 |
| TseI | GCWGC | 2 cut(s) | 321, 383 |
| TspDTI | ATGAA | 1 cut(s) | 111 |
| TspGWI | ACGGA | 1 cut(s) | 224 |
| TspRI | CASTG | 1 cut(s) | 448 |
| XapI | RAATTY | 1 cut(s) | 536 |
| XceI | RCATGY | 1 cut(s) | 239 |