Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0012673

Physical Location & Seq

Genomic Coordinates Reverse (-)

43471253 .. 43474013

Gene Structure 2761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG199700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGACCAAGCCCTCTCTTCATGCTCTTCCTCTTCGATTTCCCTGTTCTTGGTTTGAAGATATTTTTTTTTCGAATCAGACTGGCGGTCTGTTGAGATCAAGGAGGCTTTGGTGGTCTGTTAGCGGTGGAGTGGCGTATCTGGATTTGTTGTATCATTCTCCGACGCCGACGGTTGTTTGGATATACTCGGTGGTGCAGGCAGATGTTAATAAAGCTATAAAGAGGAGGTCTGGAATCCAAAGAAGAAGGATTTTTAGCAAAGAAAAGCTGCCCAGAAATATAGTTGAATCTTATGATAGAGTGCAAGATGTTGCTGAGTTACTTGGCATGATGGTTGAAGACCACAAGCGGTTGCAGCCTAATGTGAAAACCTATGCTACATCAGTCCTTGGAGTTTTAAGACAGACCCAAATTCCACCGCAAGCCAGGATTTTGAGCAGAAAGTATCAAACACTGGTGAGCTCAAGGGTTGAACCTTTACAAGAGGAAGCCGAACTTGGACATGAGATTGATTACATGGCCAGGTACATTGCAGAGGGAGGGCTTACTGGTGAACGCAAGCGATGGGTGCCTCGAAGAGGGAAAACTTCACAGAAATATGTAGTTGTAGCTAGGTCAAATTGTACAGTATATCTACAGAAATACGTAGTTGTAGCTGGGTCAAATTATATATTTTTTTTTAATACATCCCCAAGTTTTGCCACTGATGTTGGTGGCATTGAGAACACACTGATACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAP

Protein Analysis

246

Amino Acids

28.2

Weight (kDa)

9.86

Isoelectric Point (pI)

69.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012673)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0330901 RchiOBHm_Chr2g0171521
rosa_multiflora	Rmu_sc0000133.1_g000010 Rmu_sc0001356.1_g000013 Rmu_sc0004924.1_g000011
rosa_roxburghii	Rroxscaffold_4G00310330 Rroxscaffold_5G00342300
rosa_rugosa	Rorug03G0343800
rosa_samantha	Rh1BG054600 Rh1CG048000 Rh1CG199700 Rh2CG281400 Rh6BG289700 Rh6DG077300 Rh6DG266000 Rh7AG375700 Rh7AG405000
rosa_wichuraiana	Rw7G009430 Rw7G021360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	568
AciI	CCGC	4 cut(s)	84, 123, 349, 419
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	411
AcyI	GRCGYC	1 cut(s)	164
AfaI	GTAC	2 cut(s)	527, 625
AfiI	CCNNNNNNNGG	2 cut(s)	48, 578
AgsI	TTSAA	4 cut(s)	56, 287, 338, 473
AhdI	GACNNNNNGTC	1 cut(s)	84
AjnI	CCWGG	2 cut(s)	425, 521
AjuI	GAANNNNNNNTTGG	2 cut(s)	480, 512
AluBI	AGCT	5 cut(s)	215, 268, 462, 611, 656
AluI	AGCT	5 cut(s)	215, 268, 462, 611, 656
Alw21I	GWGCWC	1 cut(s)	464
AoxI	GGCC	1 cut(s)	519
ApeKI	GCWGC	2 cut(s)	268, 355
ApoI	RAATTY	1 cut(s)	411
AsuHPI	GGTGA	2 cut(s)	469, 563
AsuII	TTCGAA	1 cut(s)	71
BalI	TGGCCA	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	568
BanII	GRGCYC	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	464
BbvI	GCAGC	2 cut(s)	255, 367
BccI	CCATC	2 cut(s)	325, 558
BciT130I	CCWGG	2 cut(s)	427, 523
BfaI	CTAG	1 cut(s)	612
BfmI	CTRYAG	1 cut(s)	635
BisI	GCNGC	2 cut(s)	269, 356
BlsI	GCNGC	2 cut(s)	270, 357
Bme1390I	CCNGG	2 cut(s)	427, 523
BmeRI	GACNNNNNGTC	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	570
BmrFI	CCNGG	2 cut(s)	427, 523
BpiI	GAAGAC	1 cut(s)	345
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	448
BsaAI	YACGTR	1 cut(s)	646
BsaHI	GRCGYC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 578
Bse1I	ACTGG	3 cut(s)	85, 459, 553
Bse3DI	GCAATG	1 cut(s)	528
BseBI	CCWGG	2 cut(s)	427, 523
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	1 cut(s)	686
BseLI	CCNNNNNNNGG	2 cut(s)	48, 578
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	3 cut(s)	85, 459, 553
BseRI	GAGGAG	1 cut(s)	238
BseXI	GCAGC	2 cut(s)	255, 367
BseYI	CCCAGC	1 cut(s)	656
BsgI	GTGCAG	1 cut(s)	215
BshFI	GGCC	1 cut(s)	521
BshNI	GGYRCC	1 cut(s)	568
BsiHKAI	GWGCWC	1 cut(s)	464
BslI	CCNNNNNNNGG	2 cut(s)	48, 578
BsnI	GGCC	1 cut(s)	521
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp1407I	TGTACA	1 cut(s)	623
Bsp143I	GATC	1 cut(s)	95
BspACI	CCGC	4 cut(s)	84, 123, 349, 419
BspANI	GGCC	1 cut(s)	521
BspCNI	CTCAG	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	570
BspQI	GCTCTTC	1 cut(s)	30
BspT104I	TTCGAA	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	568
BsrDI	GCAATG	1 cut(s)	528
BsrGI	TGTACA	1 cut(s)	623
BsrI	ACTGG	3 cut(s)	85, 459, 553
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	1 cut(s)	95
BssNI	GRCGYC	1 cut(s)	164
BssT1I	CCWWGG	1 cut(s)	388
Bst2UI	CCWGG	2 cut(s)	427, 523
Bst4CI	ACNGT	2 cut(s)	172, 628
Bst6I	CTCTTC	4 cut(s)	21, 30, 36, 571
BstACI	GRCGYC	1 cut(s)	164
BstAUI	TGTACA	1 cut(s)	623
BstBAI	YACGTR	1 cut(s)	646
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	3 cut(s)	198, 423, 560
BstDEI	CTNAG	1 cut(s)	315
BstENI	CCTNNNNNAGG	1 cut(s)	576
BstF5I	GGATG	1 cut(s)	686
BstKTI	GATC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	95
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 568
BstNI	CCWGG	2 cut(s)	427, 523
BstSCI	CCNGG	2 cut(s)	425, 521
BstSFI	CTRYAG	1 cut(s)	635
BstSNI	TACGTA	1 cut(s)	646
BstV1I	GCAGC	2 cut(s)	255, 367
BstV2I	GAAGAC	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	521
BtgZI	GCGATG	1 cut(s)	577
BtsCI	GGATG	1 cut(s)	686
BtsIMutI	CAGTG	3 cut(s)	452, 702, 728
Cac8I	GCNNGC	3 cut(s)	198, 423, 560
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	526, 624
CspCI	CAANNNNNGTGG	2 cut(s)	691, 726
CviAII	CATG	4 cut(s)	20, 328, 503, 517
CviQI	GTAC	2 cut(s)	526, 624
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	1 cut(s)	97
DpnII	GATC	1 cut(s)	95
DriI	GACNNNNNGTC	1 cut(s)	84
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	4 cut(s)	21, 30, 36, 571
Eam1105I	GACNNNNNGTC	1 cut(s)	84
EarI	CTCTTC	4 cut(s)	21, 30, 36, 571
Ecl136II	GAGCTC	1 cut(s)	462
Eco105I	TACGTA	1 cut(s)	646
Eco130I	CCWWGG	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	464
Eco53kI	GAGCTC	1 cut(s)	462
EcoICRI	GAGCTC	1 cut(s)	462
EcoNI	CCTNNNNNAGG	1 cut(s)	576
EcoRII	CCWGG	2 cut(s)	425, 521
EcoT14I	CCWWGG	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	464
ErhI	CCWWGG	1 cut(s)	388
FaeI	CATG	4 cut(s)	23, 331, 506, 520
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FatI	CATG	4 cut(s)	19, 327, 502, 516
Fnu4HI	GCNGC	2 cut(s)	269, 356
FokI	GGATG	1 cut(s)	673
FriOI	GRGCYC	1 cut(s)	464
Fsp4HI	GCNGC	2 cut(s)	269, 356
FspBI	CTAG	1 cut(s)	612
GluI	GCNGC	2 cut(s)	269, 356
GsaI	CCCAGC	1 cut(s)	660
HaeIII	GGCC	1 cut(s)	521
HgaI	GACGC	1 cut(s)	172
Hin1I	GRCGYC	1 cut(s)	164
Hin1II	CATG	4 cut(s)	23, 331, 506, 520
HinfI	GANTC	3 cut(s)	73, 234, 287
HphI	GGTGA	2 cut(s)	469, 563
Hpy166II	GTNNAC	1 cut(s)	554
Hpy188I	TCNGA	2 cut(s)	78, 162
Hpy188III	TCNNGA	2 cut(s)	140, 231
Hpy8I	GTNNAC	1 cut(s)	554
Hpy99I	CGWCG	2 cut(s)	166, 172
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	2 cut(s)	172, 628
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	4 cut(s)	196, 304, 355, 533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 568
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	645
Hsp92I	GRCGYC	1 cut(s)	164
Hsp92II	CATG	4 cut(s)	23, 331, 506, 520
Kzo9I	GATC	1 cut(s)	95
LguI	GCTCTTC	1 cut(s)	30
Lsp1109I	GCAGC	2 cut(s)	255, 367
MaeI	CTAG	1 cut(s)	612
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	1 cut(s)	318
MalI	GATC	1 cut(s)	97
MboI	GATC	1 cut(s)	95
MboII	GAAGA	7 cut(s)	8, 17, 23, 68, 255, 350, 588
MhlI	GDGCHC	1 cut(s)	464
MlsI	TGGCCA	1 cut(s)	521
MluCI	AATT	3 cut(s)	411, 619, 664
MluNI	TGGCCA	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	185
Mox20I	TGGCCA	1 cut(s)	521
MscI	TGGCCA	1 cut(s)	521
MseI	TTAA	3 cut(s)	207, 398, 681
Msp20I	TGGCCA	1 cut(s)	521
MspR9I	CCNGG	2 cut(s)	427, 523
MvaI	CCWGG	2 cut(s)	427, 523
MwoI	GCNNNNNNNGC	2 cut(s)	355, 568
NdeII	GATC	1 cut(s)	95
NlaIII	CATG	4 cut(s)	23, 331, 506, 520
NlaIV	GGNNCC	1 cut(s)	570
NspV	TTCGAA	1 cut(s)	71
PciSI	GCTCTTC	1 cut(s)	30
PfeI	GAWTC	3 cut(s)	73, 234, 287
PkrI	GCNGC	2 cut(s)	270, 357
Ppu21I	YACGTR	1 cut(s)	646
Psp124BI	GAGCTC	1 cut(s)	464
Psp6I	CCWGG	2 cut(s)	425, 521
PspFI	CCCAGC	1 cut(s)	656
PspGI	CCWGG	2 cut(s)	425, 521
PspN4I	GGNNCC	1 cut(s)	570
RsaI	GTAC	2 cut(s)	527, 625
RsaNI	GTAC	2 cut(s)	526, 624
SacI	GAGCTC	1 cut(s)	464
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	3 cut(s)	207, 398, 681
SatI	GCNGC	2 cut(s)	269, 356
Sau3AI	GATC	1 cut(s)	95
ScrFI	CCNGG	2 cut(s)	427, 523
SduI	GDGCHC	1 cut(s)	464
SfcI	CTRYAG	1 cut(s)	635
SfuI	TTCGAA	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
SnaBI	TACGTA	1 cut(s)	646
Sse9I	AATT	3 cut(s)	411, 619, 664
SsiI	CCGC	4 cut(s)	84, 123, 349, 419
SspMI	CTAG	1 cut(s)	612
SstI	GAGCTC	1 cut(s)	464
StyD4I	CCNGG	2 cut(s)	425, 521
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	2 cut(s)	172, 628
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	3 cut(s)	34, 71, 574
TasI	AATT	3 cut(s)	411, 619, 664
TatI	WGTACW	1 cut(s)	623
TfiI	GAWTC	3 cut(s)	73, 234, 287
Tru1I	TTAA	3 cut(s)	207, 398, 681
Tru9I	TTAA	3 cut(s)	207, 398, 681
TscAI	CASTG	3 cut(s)	459, 709, 735
TseI	GCWGC	2 cut(s)	268, 355
TspDTI	ATGAA	1 cut(s)	8
TspRI	CASTG	3 cut(s)	459, 709, 735
XagI	CCTNNNNNAGG	1 cut(s)	576
XapI	RAATTY	1 cut(s)	411
XspI	CTAG	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.